GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_016746395.2	NC_052520	NC_052520.2	Drosophila simulans strain w501 chromosome 2L; Prin_Dsim_3.1; whole genome shotgun sequence.	6884848	6884296	5038512	5049440	499	23857595	0.29	0.29	0.21	0.21	0.42	0.9586	0.0011	0.9989	1.9827	1469	1395	2864	4745740	4582089	3563439	3510152	16401420	0.28	0.26	0.23	0.23	0.45	0.9196	0.1115	0.899	1.9814	68069	1342	1273	2615	1076312	883608	1105534	1099301	4164755	0.26	0.22	0.26	0.26	0.52	0.8861	0.2414	0.8005	1.9638	4	1844338	1909144	1263758	1232849	6250089	0.31	0.34	0.18	0.17	0.35	0.852	0.2649	0.783	1.8939	99	83	182	76544	70055	52086	53101	251786	0.3	0.28	0.21	0.21	0.42	0.8852	0.2178	0.818	1.9491	0	113512	118065	76350	76368	384295	0.3	0.35	0.17	0.17	0.34	0.8437	0.3022	0.7596	1.8784	23	18	41	528	689	786	971	2974	0.18	0.23	0.26	0.33	0	0.59	0.8906	0.2624	0.775	1.9528	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29653	37124	9295	17903	26902	38897	22526	20105	24471	26145	23638	28525	18775	20379	18035	27447	14947	29132	24791	17804	38625	15438	19695	28901	37246	24049	12878	20866	13880	27923	28406	15948	18392	14229	21902	24488	22837	20486	18652	33842	28888	22902	25653	27381	24859	15189	11608	18122	12957	18794	20631	21704	9474	16637	19756	29305	4405	18605	22095	12430	28338	7195	13379	19946
GCF_016746395.2	NC_052521	NC_052521.2	Drosophila simulans strain w501 chromosome 2R; Prin_Dsim_3.1; whole genome shotgun sequence.	6296003	6285566	4866575	4870881	0	22319025	0.28	0.28	0.22	0.22	0.44	0.9584	0.0013	0.9987	1.9883	1627	1617	3244	4668624	4503077	3728323	3644775	16544799	0.27	0.26	0.24	0.23	0.47	0.9201	0.1064	0.9032	1.9845	54136	1452	1394	2846	1106270	909131	1178601	1161800	4355802	0.26	0.22	0.26	0.26	0.52	0.8833	0.2501	0.7944	1.9617	2	1780400	1865944	1297798	1258196	6202338	0.29	0.33	0.19	0.18	0.37	0.8533	0.2716	0.7775	1.9078	113	71	184	75806	68355	51400	51420	246981	0.31	0.28	0.2	0.21	0.41	0.8814	0.2248	0.8124	1.9419	7	84355	83565	57007	55220	280147	0.31	0.35	0.17	0.17	0.34	0.8464	0.3042	0.7578	1.8748	56	46	102	1344	1671	2029	2472	7516	0.18	0.22	0.27	0.33	0	0.6	0.8877	0.2315	0.7998	1.955	68	68	1772	1703	2245	2366	8086	0.22	0.21	0.28	0.29	0	0.57	0.9044	0.0461	0.9551	1.9853	30654	38974	9588	17739	28091	41106	23533	19707	26321	27202	22292	27877	18390	21784	17885	29299	15013	30901	27018	18072	42927	15885	21083	28484	39842	25823	13510	21163	13520	28961	29397	16362	19029	13940	22127	27076	24075	22166	20671	37244	31916	25754	25118	29806	26528	15157	12098	18853	13099	19230	21704	23683	9246	17257	20585	30059	4743	20370	23644	13075	29054	7467	13888	21622
GCF_016746395.2	NC_052522	NC_052522.2	Drosophila simulans strain w501 chromosome 3L; Prin_Dsim_3.1; whole genome shotgun sequence.	6708587	6734794	4979402	4977120	0	23399903	0.29	0.29	0.21	0.21	0.43	0.9582	0.0022	0.9978	1.9839	1491	1511	3002	5038997	4841407	3827500	3748896	17456800	0.28	0.26	0.23	0.23	0.46	0.9196	0.112	0.8985	1.9823	26431	1358	1383	2741	1112929	900987	1163255	1146148	4323319	0.26	0.22	0.26	0.26	0.52	0.8837	0.2561	0.7911	1.9593	1	1922654	1995537	1328682	1286975	6533848	0.3	0.34	0.18	0.17	0.35	0.8538	0.2687	0.7804	1.8966	90	78	168	75209	71541	52261	53099	252110	0.3	0.28	0.2	0.21	0.42	0.8841	0.2265	0.8128	1.9456	0	137135	141653	90831	91014	460633	0.3	0.36	0.17	0.17	0.34	0.843	0.315	0.756	1.8675	28	17	45	625	777	882	1078	3362	0.19	0.23	0.26	0.32	0	0.58	0.8791	0.2423	0.7922	1.9624	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30497	39467	9641	17995	28150	40152	23988	19876	26394	25867	23352	28632	18575	20901	18352	28899	14974	30427	25137	17422	41198	16203	21013	29539	40672	25959	13443	21467	13945	30047	29139	15847	18647	13954	21635	25605	24083	22122	19706	37250	31762	23631	25938	28861	24894	15384	11668	18612	12933	19346	21684	22619	9389	17342	20998	30843	4826	19055	23447	12647	29825	7404	13854	21086
GCF_016746395.2	NC_052523	NC_052523.2	Drosophila simulans strain w501 chromosome 3R; Prin_Dsim_3.1; whole genome shotgun sequence.	7969436	7965163	6108855	6106131	0	28149585	0.28	0.28	0.22	0.22	0.43	0.9589	0.0005	0.9995	1.9874	1850	1874	3724	5984626	5764574	4716492	4610988	21076680	0.28	0.26	0.23	0.23	0.46	0.9214	0.1069	0.9028	1.9858	39700	1703	1679	3382	1353465	1102533	1445941	1431048	5332987	0.26	0.22	0.26	0.27	0.53	0.8849	0.245	0.7979	1.9626	17	2264475	2361446	1627385	1573502	7826808	0.3	0.34	0.19	0.17	0.36	0.8537	0.2672	0.7809	1.9014	94	108	202	87021	80551	63005	63782	294359	0.29	0.27	0.22	0.22	0.44	0.8874	0.227	0.8108	1.9566	0	111083	113700	78250	79263	382296	0.3	0.35	0.17	0.18	0.35	0.8513	0.2761	0.781	1.8837	41	39	80	1171	1358	1490	1920	5939	0.2	0.23	0.25	0.32	0	0.57	0.8848	0.2258	0.8069	1.9681	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38456	47854	11343	21762	35279	50969	28796	23482	31850	32749	27803	34230	23086	26718	22289	35560	18309	38052	32016	21444	51705	19617	26193	35665	49650	31343	16298	25741	16045	36789	35962	19294	23040	16589	26906	32661	29718	27149	24539	46165	39399	30887	29557	37363	32385	18063	14766	22721	16005	23747	27396	29227	10818	21076	25434	37842	5560	25102	29689	15901	35983	8535	17111	25948
GCF_016746395.2	NC_052524	NC_052524.2	Drosophila simulans strain w501 chromosome 4; Prin_Dsim_3.1; whole genome shotgun sequence.	373322	375892	198079	199574	0	1146867	0.33	0.33	0.17	0.17	0.35	0.9452	0.0072	0.9928	1.9311	46	52	98	325100	312165	169674	168409	975348	0.33	0.32	0.17	0.17	0.35	0.9172	0.0688	0.9351	1.9276	0	34	48	82	82416	65340	53184	53039	253979	0.32	0.26	0.2	0.21	0.42	0.8836	0.2505	0.7906	1.9494	0	146006	152022	71386	70907	440321	0.35	0.38	0.14	0.14	0.28	0.8399	0.2199	0.818	1.8242	12	5	17	15514	15390	8178	8445	47527	0.33	0.32	0.17	0.18	0.35	0.894	0.1543	0.8648	1.92	0	4168	4329	2126	1973	12596	0.33	0.38	0.15	0.15	0.29	0.8338	0.2496	0.793	1.844	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2342	1997	1091	1300	1518	1184	1150	2114	907	1167	2622	2156	1563	1092	1318	1873	1117	1088	1227	1732	1468	792	850	1639	1763	916	1260	1920	1340	1346	1298	1386	886	2067	1932	1113	1136	706	1050	814	1384	624	3493	759	1009	1244	625	1158	930	1541	988	803	1853	771	851	1508	736	642	798	661	2645	1367	897	961
GCF_016746395.2	NC_052525	NC_052525.2	Drosophila simulans strain w501 chromosome X; Prin_Dsim_3.1; whole genome shotgun sequence.	6222281	6235812	4780148	4794081	500	22032822	0.28	0.28	0.22	0.22	0.43	0.9572	0.0025	0.9975	1.9876	1162	1212	2374	4651654	4452569	3681924	3595634	16381781	0.27	0.25	0.24	0.24	0.48	0.92	0.1102	0.9002	1.9855	37405	1078	1100	2178	933118	736770	1079473	1067791	3817152	0.25	0.2	0.27	0.28	0.55	0.883	0.2478	0.7969	1.9577	22	1585296	1644894	1128991	1079609	5438790	0.29	0.33	0.21	0.18	0.39	0.8662	0.2674	0.7804	1.9246	69	62	131	60262	55128	41968	41535	198893	0.31	0.27	0.21	0.21	0.42	0.8826	0.2407	0.7972	1.947	0	120263	122744	85543	88223	416773	0.31	0.35	0.17	0.17	0.34	0.841	0.2846	0.7706	1.8778	12	9	21	310	379	390	513	1592	0.2	0.24	0.24	0.32	0	0.56	0.9012	0.2611	0.7766	1.9681	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26245	33109	7154	13440	27554	38822	20491	14107	22857	22982	19124	22142	16085	20695	15347	24738	11983	27743	21148	11836	38914	14397	18188	25330	39786	22804	10345	16053	9833	24391	27034	11749	17215	10009	19081	24125	22108	19131	15853	36448	31526	26881	16375	31700	23558	11350	11198	14904	10061	17291	21503	25519	5907	13983	18398	27963	3346	20917	24862	12400	25218	4566	10810	19414