GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_008121235.1	NC_048530	NC_048530.1	Drosophila subobscura isolate 14011-0131.10 chromosome A; UCBerk_Dsub_1.0; whole genome shotgun sequence.	6519394	6530909	5558669	5569893	4000	24182865	0.27	0.27	0.23	0.23	0.46	0.9548	0.0019	0.9981	1.9953	1144	1170	2314	4119048	3943687	3698638	3564939	500	15326812	0.26	0.24	0.26	0.25	0.5	0.917	0.1203	0.892	1.9847	149560	1054	1066	2120	867112	682406	1072047	1046439	3668004	0.25	0.2	0.27	0.28	0.55	0.8802	0.2544	0.7929	1.9546	0	1592141	1659894	1337606	1255612	0	5845253	0.25	0.31	0.24	0.2	0	0.44	0.8591	0.352	0.7249	1.932	7003	42	53	95	21600	16538	13911	13403	65452	0.32	0.25	0.21	0.22	0	0.43	0.8401	0.4108	0.7068	1.876	84901	86920	65031	64171	500	301523	0.29	0.32	0.19	0.18	0	0.38	0.8617	0.2343	0.8075	1.9125	13	12	25	365	444	484	602	1895	0.19	0.24	0.25	0.32	0	0.57	0.8969	0.2287	0.8028	1.9674	5	2	7	1358	1428	932	1166	4884	0.26	0.29	0.2	0.25	0	0.44	0.894	0.1596	0.854	1.9852	26094	29804	5671	12145	31729	38022	22032	13314	18391	21872	16850	17033	15881	20294	12337	20950	11456	28106	17890	10789	41696	12176	19559	21332	42858	19469	8460	13613	9136	19502	23238	9339	16482	9226	22129	23728	22300	20047	15005	39104	35748	29188	13295	35135	25139	8876	12080	13284	10493	18482	20744	26229	4243	12681	15825	26926	2349	19623	22741	12582	23065	3419	10679	18478
GCF_008121235.1	NC_048531	NC_048531.1	Drosophila subobscura isolate 14011-0131.10 chromosome E; UCBerk_Dsub_1.0; whole genome shotgun sequence.	5468950	5454280	4718657	4701466	0	20343353	0.27	0.27	0.23	0.23	0.46	0.9574	0.0032	0.9968	1.9961	1493	1382	2875	4014184	3863854	3613284	3513734	0	15005056	0.26	0.24	0.25	0.25	0.5	0.9187	0.1162	0.8951	1.9873	214953	1334	1207	2541	962532	783079	1122258	1101475	3969344	0.25	0.21	0.27	0.27	0.54	0.8808	0.2556	0.7907	1.9598	1654	1400877	1473315	1178467	1128386	0	5181045	0.26	0.32	0.23	0.2	0	0.42	0.8565	0.3266	0.7399	1.934	2330	51	47	98	19286	16226	13289	13826	62627	0.31	0.26	0.21	0.22	0	0.43	0.8647	0.3229	0.7518	1.9146	93133	95086	75604	78616	0	342439	0.29	0.34	0.18	0.19	0	0.37	0.8694	0.2599	0.7879	1.9099	51	50	101	1378	1660	1986	2423	7447	0.19	0.22	0.27	0.32	0	0.59	0.8896	0.2294	0.8029	1.9589	0	1	1	27	26	31	35	119	0.23	0.22	0.26	0.29	0	0.55	0.9153	0.0795	0.9243	1.9898	28692	33607	6844	14118	30518	40017	23303	16596	21066	25035	18580	21243	16642	21477	14167	24578	13518	30394	22237	14134	45201	12646	21673	23324	40580	21286	9941	16920	10659	22528	25584	11701	18234	10830	22821	26460	23466	21362	18358	38117	34479	28089	17246	33436	26992	10975	12469	16418	12423	19024	20854	25105	5331	14627	17467	27574	2930	19113	21413	12782	25892	4504	12700	19830
GCF_008121235.1	NC_048532	NC_048532.1	Drosophila subobscura isolate 14011-0131.10 chromosome J; UCBerk_Dsub_1.0; whole genome shotgun sequence.	6547216	6513066	5366109	5385448	3500	23815339	0.27	0.27	0.23	0.23	0.45	0.9563	0.0044	0.9956	1.9931	1327	1393	2720	4628146	4445483	3977953	3892015	500	16944097	0.27	0.24	0.25	0.24	0.49	0.9184	0.1206	0.8919	1.9868	161936	1150	1220	2370	911688	732755	1045098	1030944	3720485	0.25	0.21	0.26	0.27	0.53	0.881	0.2593	0.7893	1.9576	0	1575192	1636566	1261540	1206757	500	5680555	0.27	0.32	0.22	0.19	0	0.41	0.856	0.3273	0.7402	1.928	0	68	47	115	30028	25428	22231	23478	101165	0.29	0.27	0.21	0.23	0	0.44	0.867	0.3449	0.7417	1.9004	215025	221999	176782	179649	0	793455	0.27	0.34	0.2	0.19	0	0.39	0.8694	0.2953	0.7651	1.9183	15	14	29	407	520	570	705	2202	0.19	0.24	0.26	0.32	0	0.58	0.8735	0.2661	0.774	1.9616	0	4	4	3095	2984	1757	2283	10119	0.29	0.29	0.18	0.23	0	0.41	0.9056	0.1586	0.8566	1.972	27049	33310	6146	13285	29122	38044	22042	15988	19723	22938	18746	20078	15623	19918	13145	22470	12573	29181	19292	13499	41659	11935	19726	22488	39671	19235	8814	16368	10737	20955	23830	9900	16815	10288	21571	22486	22398	20492	17032	35970	32293	25515	16936	31291	25188	9999	11194	15354	11684	18102	19754	23646	5162	13511	17194	27018	2821	16685	20194	12028	24162	4247	11971	17167
GCF_008121235.1	NC_048533	NC_048533.1	Drosophila subobscura isolate 14011-0131.10 chromosome O; UCBerk_Dsub_1.0; whole genome shotgun sequence.	8306021	8308588	6762121	6781424	1000	30159154	0.28	0.28	0.22	0.22	0.45	0.9559	0.0016	0.9984	1.9925	1819	1757	3576	5723401	5536672	4848329	4728448	0	20836850	0.27	0.25	0.24	0.24	0.49	0.919	0.1139	0.897	1.9868	232024	1609	1578	3187	1253888	1019157	1403220	1394019	5070284	0.26	0.22	0.26	0.27	0.53	0.8824	0.2453	0.7981	1.9617	77	2162283	2274171	1703126	1633364	0	7772944	0.27	0.33	0.21	0.19	0	0.4	0.8552	0.3184	0.7457	1.9239	3457	51	63	114	23822	19360	15899	15789	74870	0.31	0.26	0.21	0.23	0	0.44	0.8651	0.3805	0.721	1.8836	121043	120518	100214	98842	0	440617	0.29	0.32	0.19	0.19	0	0.39	0.8557	0.263	0.7884	1.9148	34	29	63	919	1063	1176	1517	4675	0.2	0.23	0.25	0.32	0	0.58	0.8826	0.2126	0.8163	1.968	36	0	36	937	972	1116	1259	4284	0.22	0.23	0.26	0.29	0	0.55	0.9153	0.0785	0.9252	1.9899	38198	43620	8830	18132	40124	50694	29704	22282	25785	31564	26825	28104	22393	26540	18683	30466	17805	38674	26608	19733	55044	16492	26505	32198	51374	25468	12314	23109	14858	28812	32465	14783	22426	15094	30226	31502	29640	26348	22274	47701	42703	34046	24527	41991	34377	14369	15320	20806	16978	25835	26222	31421	7866	18258	22078	35817	3786	22508	26618	16495	34012	6054	16841	23883
GCF_008121235.1	NC_048534	NC_048534.1	Drosophila subobscura isolate 14011-0131.10 chromosome U; UCBerk_Dsub_1.0; whole genome shotgun sequence.	7342675	7332608	5630194	5634292	2000	25941769	0.28	0.28	0.22	0.22	0.43	0.9559	0.001	0.999	1.9874	1318	1357	2675	4750407	4598817	3772213	3719182	500	16841119	0.27	0.25	0.24	0.24	0.47	0.9184	0.1136	0.8977	1.9835	109397	1214	1214	2428	991441	825215	1069778	1075208	3961642	0.26	0.22	0.25	0.26	0.52	0.8838	0.2442	0.799	1.9629	4	1881079	1945608	1375969	1338909	500	6542065	0.28	0.33	0.2	0.18	0	0.38	0.8508	0.3158	0.7481	1.9109	78003	44	52	96	15861	13915	10616	10717	51109	0.32	0.27	0.2	0.21	0	0.41	0.8584	0.3243	0.7537	1.9008	107289	109790	72968	72698	0	362745	0.31	0.34	0.18	0.17	0	0.35	0.8573	0.2577	0.7937	1.8879	19	28	47	596	781	928	1100	3405	0.18	0.23	0.27	0.32	0	0.59	0.8881	0.2322	0.7989	1.9531	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30273	32703	7112	14484	30995	38396	23356	19242	19584	25770	22669	23014	18398	20131	15286	22814	14229	30432	20369	17402	41404	13026	19973	26040	38353	18933	10249	19891	13114	21956	24843	11992	17375	13119	24024	23099	22608	19796	17371	34290	32188	25378	21294	31128	27197	11930	11518	16424	13964	20245	20080	24119	7397	14358	17316	27956	3205	16971	19876	13387	26739	5309	13410	18332
GCF_008121235.1	NC_048535	NC_048535.1	Drosophila subobscura isolate 14011-0131.10 chromosome dot; UCBerk_Dsub_1.0; whole genome shotgun sequence.	462545	460665	291891	289292	1500	1505893	0.31	0.31	0.19	0.19	0.39	0.9449	0.0065	0.9935	1.9619	45	43	88	309987	294464	194521	193062	0	992034	0.32	0.29	0.19	0.2	0.39	0.9214	0.0826	0.9234	1.9582	0	45	41	86	81876	63653	60289	60114	265932	0.31	0.25	0.21	0.22	0.44	0.8823	0.2625	0.7812	1.9539	0	148021	152751	89969	88954	0	479695	0.32	0.36	0.16	0.16	0	0.31	0.8496	0.2377	0.8055	1.8647	0	0	1	1	17	39	27	38	121	0.1	0.35	0.09	0.46	0	0.55	0.804	1.3187	0.2783	1.3284	1944	2245	1836	1974	0	7999	0.23	0.31	0.21	0.24	0	0.45	0.9256	0.2068	0.8237	1.9763	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2360	2025	974	1405	1885	1413	1366	1816	1020	1432	2324	2033	1726	1309	1427	1831	1126	1303	1212	1557	1576	832	950	1672	2105	1114	1084	1788	1312	1402	1377	1200	954	1809	2167	1249	1181	838	1003	1120	1822	855	2949	1007	1305	1137	672	1380	904	1469	1159	1035	1487	886	1102	1776	591	854	1068	812	2631	1081	1061	1133
NA	NC_045530	NC_045530.1	Drosophila subobscura haplotype 1A mitochondrion; complete genome.	6335	6087	1960	1496	0	15878	0.4	0.38	0.12	0.09	0.22	0.887	0.1542	0.8621	1.7528	23	14	37	4994	6391	1526	1831	0	14742	0.36	0.41	0.1	0.13	0.23	0.8386	0.299	0.7591	1.7473	11	3	2	5	1347	1861	477	548	4233	0.32	0.44	0.11	0.13	0.24	0.8565	0.2979	0.7512	1.7632	1	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	554	558	148	199	1459	0.38	0.38	0.1	0.14	0	0.24	0.8323	0.2909	0.7682	1.758	0	2	2	844	863	141	252	2100	0.4	0.41	0.07	0.12	0	0.19	0.8182	0.2892	0.7721	1.693	10	3	45	30	22	1	40	113	0	4	69	25	37	1	14	4	37	0	6	116	0	29	0	20	3	4	9	15	60	52	4	10	2	62	37	1	7	4	6	5	0	0	22	0	1	36	7	28	16	34	0	1	216	26	0	23	0	0	2	7	23	5	41	16