GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_014743375.2	NC_050608	NC_050608.1	Drosophila subpulchrella strain 33 F10 #4 breed RU33 chromosome 4; RU_Dsub_v1.1 Primary Assembly; whole genome shotgun sequence.	715475	712055	415507	416860	2259897	0.32	0.32	0.18	0.18	0.37	0.9397	0.004	0.996	1.9494	52	48	100	541190	530227	306773	306633	1684823	0.32	0.31	0.18	0.19	0.37	0.9217	0.0562	0.9468	1.9457	668	43	41	84	81771	63716	55674	55172	256333	0.32	0.25	0.21	0.22	0.43	0.8847	0.2559	0.7871	1.9532	7	272056	280295	148506	149160	850017	0.34	0.37	0.15	0.15	0.3	0.8528	0.1985	0.8358	1.8497	8	8	16	5622	5363	4001	4111	19097	0.29	0.28	0.21	0.22	0.43	0.8797	0.2351	0.8037	1.9462	16898	17543	9990	9884	54315	0.32	0.36	0.17	0.16	0.33	0.8633	0.2531	0.7921	1.8794	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2282	2016	1122	1341	1522	1328	1164	1925	951	1187	2439	2148	1565	1177	1384	2019	1121	1218	1180	1644	1593	811	886	1603	1870	1031	1144	1838	1265	1299	1263	1332	892	1978	1981	1232	1241	787	1088	939	1485	722	3289	881	1030	1246	598	1210	903	1352	1033	866	1746	807	992	1584	682	696	917	673	2613	1250	877	1007
GCF_014743375.2	NC_050609	NC_050609.1	Drosophila subpulchrella strain 33 F10 #4 breed RU33 chromosome 3R; RU_Dsub_v1.1 Primary Assembly; whole genome shotgun sequence.	5906195	5902360	4209326	4215863	20233744	0.29	0.29	0.21	0.21	0.42	0.9569	0.0011	0.9989	1.9797	1178	1210	2388	4202929	4073039	3126609	3046447	14449024	0.28	0.26	0.23	0.23	0.46	0.9194	0.1083	0.9017	1.9817	45641	1116	1130	2246	919216	751120	996577	981686	3648599	0.26	0.22	0.26	0.26	0.53	0.884	0.2468	0.7966	1.9614	56	1797173	1872997	1170053	1129616	5969839	0.31	0.35	0.18	0.16	0.34	0.849	0.275	0.7764	1.8822	23	32	55	9990	8817	6526	6664	31997	0.31	0.28	0.21	0.2	0.41	0.8692	0.2652	0.784	1.9316	51896	53066	32597	32572	170131	0.31	0.36	0.17	0.16	0.33	0.8412	0.2719	0.7818	1.8667	27	24	51	745	867	939	1225	3776	0.2	0.23	0.25	0.32	0	0.57	0.88	0.2387	0.7979	1.9654	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26200	32341	7014	14299	23001	35821	18827	15365	22952	22917	18967	22760	15402	17077	15238	24118	12838	26038	21585	14980	36177	13702	18613	24757	34104	22729	10774	16884	11261	26105	24730	12902	15599	11132	17900	21564	20011	21152	15889	33564	26093	19889	19938	25489	22194	11986	11413	15874	11014	16079	18168	18702	7559	15504	18699	26546	3647	17732	19908	9925	24429	5925	11933	17485
GCF_014743375.2	NC_050610	NC_050610.1	Drosophila subpulchrella strain 33 F10 #4 breed RU33 chromosome 2L; RU_Dsub_v1.1 Primary Assembly; whole genome shotgun sequence.	7888866	7887209	5224462	5213656	26214193	0.3	0.3	0.2	0.2	0.4	0.9548	0.0011	0.9989	1.9699	1352	1441	2793	5046226	4899774	3496863	3441735	16884598	0.29	0.27	0.22	0.22	0.44	0.917	0.1109	0.8997	1.9755	23307	1276	1330	2606	1059106	880620	1094679	1091359	4125764	0.26	0.23	0.25	0.26	0.51	0.8853	0.2441	0.7986	1.9622	4	2262183	2331417	1367043	1333295	7293938	0.32	0.36	0.17	0.16	0.33	0.8495	0.2602	0.7876	1.8717	44	51	95	19898	17704	13278	13334	64214	0.31	0.29	0.2	0.2	0.4	0.871	0.2493	0.7933	1.9328	31538	34037	17948	16989	100512	0.33	0.38	0.14	0.15	0.29	0.8257	0.2704	0.7764	1.8312	26	17	43	564	733	818	1012	3127	0.18	0.24	0.26	0.32	0	0.58	0.8896	0.2597	0.7773	1.9564	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29735	36919	8770	17106	24624	39500	21178	19628	24927	26382	23078	28592	18243	18861	17994	27192	15373	28720	24483	18832	38755	15768	19811	29440	36965	25033	12092	20805	14097	28840	28515	15817	18295	14106	20451	23734	21599	23271	18308	35226	27433	20930	25325	27184	24261	14907	13018	17762	12903	18267	19951	19627	9855	17745	20689	28712	4344	18640	21496	11434	27348	7101	13280	19159
GCF_014743375.2	NC_050611	NC_050611.1	Drosophila subpulchrella strain 33 F10 #4 breed RU33 chromosome 2R; RU_Dsub_v1.1 Primary Assembly; whole genome shotgun sequence.	6478305	6497145	4597064	4595205	22167719	0.29	0.29	0.21	0.21	0.41	0.957	0.0017	0.9983	1.9789	1578	1550	3128	4562005	4406233	3414981	3325022	15708241	0.28	0.26	0.23	0.23	0.46	0.9179	0.1076	0.9022	1.9803	30325	1375	1410	2785	1046664	867988	1151254	1130939	4196845	0.25	0.22	0.26	0.26	0.53	0.8825	0.2547	0.7911	1.9594	2	1948206	2021351	1256242	1213905	6439704	0.3	0.34	0.19	0.17	0.35	0.8508	0.2766	0.7753	1.8921	41	45	86	17913	16179	12937	13282	60311	0.31	0.28	0.2	0.21	0.41	0.8713	0.2296	0.8071	1.9379	24457	24855	13846	13557	76715	0.32	0.36	0.16	0.16	0.32	0.8418	0.252	0.7955	1.8618	45	43	88	1171	1453	1762	2100	6486	0.18	0.22	0.27	0.32	0	0.6	0.8861	0.2234	0.805	1.9582	110	110	2885	2632	3735	3812	13064	0.22	0.2	0.29	0.29	0	0.58	0.9042	0.0563	0.946	1.9817	29610	37232	8528	16336	25356	41053	21912	17947	26110	26916	20390	25575	17147	20066	17014	27898	14658	30171	26142	17281	43222	15569	21134	27350	39495	26481	12423	19602	12861	28961	28808	15512	18288	12883	20147	25617	22753	24468	19014	38437	30756	24228	22507	29591	25219	14152	13213	18267	12538	17963	20915	21543	8541	18226	21321	29745	4245	20538	22675	11568	27137	6659	13630	20204
GCF_014743375.2	NC_050612	NC_050612.1	Drosophila subpulchrella strain 33 F10 #4 breed RU33 chromosome 3L; RU_Dsub_v1.1 Primary Assembly; whole genome shotgun sequence.	8761089	8745719	5988232	6000187	29495227	0.3	0.3	0.2	0.2	0.41	0.9544	0.0019	0.9981	1.9746	1458	1504	2962	5471445	5270594	3919271	3826781	18488091	0.28	0.26	0.23	0.22	0.45	0.9173	0.1151	0.8963	1.9771	40258	1362	1391	2753	1101142	895888	1187113	1165628	4349771	0.26	0.22	0.26	0.26	0.52	0.8821	0.2571	0.79	1.9568	1	2424238	2489511	1524943	1476689	7915381	0.31	0.35	0.18	0.16	0.34	0.852	0.2662	0.7831	1.882	52	43	95	21331	19748	14383	14507	69969	0.32	0.29	0.2	0.2	0.4	0.8748	0.2382	0.8013	1.934	52534	53965	32111	32998	171608	0.32	0.37	0.16	0.16	0.31	0.842	0.2745	0.7791	1.852	20	33	53	726	931	1037	1266	3960	0.18	0.23	0.26	0.32	0	0.58	0.8786	0.2508	0.7855	1.9625	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30434	39651	8542	17356	26612	42139	23218	18508	27776	26645	22797	28277	18113	19991	18308	29103	15050	31024	25417	17389	42908	16387	21878	29582	42143	27450	12351	20630	13827	30893	29707	15371	19125	13448	20227	25470	24150	25851	19583	40674	31624	23201	24457	29934	25139	14890	13488	18833	12977	19012	21441	22104	9208	18599	22175	30897	4619	20248	23354	11922	29061	7244	13889	20689
GCF_014743375.2	NC_050613	NC_050613.1	Drosophila subpulchrella strain 33 F10 #4 breed RU33 chromosome X; RU_Dsub_v1.1 Primary Assembly; whole genome shotgun sequence.	8926867	8813058	5971160	5963206	29674291	0.3	0.3	0.2	0.2	0.4	0.9513	0.0071	0.993	1.9722	1197	1180	2377	5702881	5505338	4032973	3931128	19172320	0.28	0.26	0.23	0.23	0.46	0.9176	0.1101	0.9006	1.9784	11886	1128	1090	2218	926435	728309	1119000	1101024	3874768	0.24	0.2	0.28	0.28	0.55	0.881	0.2542	0.7921	1.9521	0	2376312	2442625	1447919	1388972	7655828	0.3	0.34	0.19	0.17	0.36	0.8644	0.2579	0.7892	1.9016	45	48	93	26026	21904	17190	16995	82115	0.32	0.27	0.2	0.2	0.4	0.882	0.2297	0.8061	1.9379	129808	132370	76640	78239	417057	0.33	0.35	0.16	0.15	0.31	0.8292	0.2427	0.8001	1.8602	25	11	36	496	630	678	890	2694	0.19	0.23	0.25	0.33	0	0.58	0.8971	0.2714	0.7667	1.9615	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25919	33988	6556	12895	26640	42618	19546	12900	24862	23880	18224	21539	15152	20043	14777	24337	11853	28592	21173	11242	42021	14862	19777	25338	41423	24932	9499	14842	9655	25746	27577	11305	17468	9235	17757	24791	22135	23534	15370	40758	31743	26681	15915	33246	23376	10699	13433	14749	10010	16933	21591	24812	5272	15865	19665	28661	2999	23000	25868	11426	24552	4150	10597	19204