GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_016746365.2	NC_052526	NC_052526.2	Drosophila yakuba strain Tai18E2 chromosome X; Prin_Dyak_Tai18E2_2.1; whole genome shotgun sequence.	7004294	7100394	5273855	5295014	499	24674056	0.28	0.29	0.21	0.21	0.43	0.9561	0.0088	0.9912	1.9851	1186	1169	2355	5054069	4871792	3940203	3845872	100	17712036	0.27	0.25	0.24	0.24	0.48	0.9192	0.1102	0.9	1.9842	33634	1084	1039	2123	916152	724325	1077414	1062205	3780096	0.25	0.2	0.28	0.28	0.55	0.8822	0.2508	0.7947	1.956	22	1948989	2022279	1368934	1314116	100	6654418	0.29	0.33	0.2	0.18	0	0.38	0.8638	0.2779	0.7734	1.9179	0	88	92	180	104576	95631	70854	70856	341917	0.31	0.27	0.21	0.21	0	0.42	0.8857	0.23	0.8079	1.9499	98214	101678	71769	71917	343578	0.31	0.35	0.17	0.17	0	0.34	0.841	0.2818	0.7734	1.8768	11	15	26	380	465	492	645	1982	0.19	0.24	0.25	0.32	0	0.57	0.899	0.2568	0.7782	1.9661	0	1	1	48	51	35	45	179	0.27	0.28	0.2	0.25	0	0.45	0.8809	0.1553	0.8595	1.9864	25498	32445	7026	13263	28435	38325	20555	13854	22533	23166	18378	20692	15561	20829	14819	24005	11425	28762	20155	11882	40049	14487	18150	24502	40079	22829	9864	15820	9624	23764	26295	10998	16443	9430	18663	23312	22782	19052	15678	36758	31762	27339	16042	31935	23725	11031	10702	14341	10231	17485	20879	25828	5485	13673	18033	28817	3093	20968	24666	12315	25082	4362	10780	18970
GCF_016746365.2	NC_052527	NC_052527.2	Drosophila yakuba strain Tai18E2 chromosome 2L; Prin_Dyak_Tai18E2_2.1; whole genome shotgun sequence.	8940729	8943862	6571681	6596459	200	31052931	0.29	0.29	0.21	0.21	0.42	0.9588	0.0021	0.9979	1.9833	1607	1554	3161	5419905	5259568	4113799	4043932	0	18837204	0.28	0.26	0.23	0.23	0.46	0.9196	0.1133	0.8975	1.9812	22008	1414	1344	2758	1141197	941446	1195831	1172426	4450900	0.26	0.22	0.26	0.26	0.52	0.8849	0.2437	0.7988	1.9626	101	2273560	2374269	1583477	1553479	0	7784785	0.3	0.34	0.19	0.17	0	0.36	0.8539	0.2669	0.7812	1.8993	0	147	148	295	194203	180494	130210	131740	636647	0.31	0.28	0.2	0.21	0	0.41	0.889	0.2057	0.8265	1.9473	83977	87199	57386	56355	284917	0.31	0.35	0.17	0.17	0	0.34	0.8386	0.3026	0.7576	1.8721	32	38	70	904	1176	1342	1703	5125	0.18	0.23	0.26	0.33	0	0.59	0.8925	0.2713	0.7677	1.9525	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30919	38834	10296	19671	29055	41120	23873	20886	25968	27939	23683	29714	19799	22252	18872	29676	15994	31595	26689	19636	41429	16156	21424	29035	40163	26573	13913	21913	14426	29412	29596	17557	19574	14421	24117	27186	25133	22385	20459	36518	31154	24988	26738	29632	27104	16213	12424	18997	13797	20261	21753	23449	10450	18330	20628	31813	4696	20340	23444	13426	30367	7523	14074	21067
GCF_016746365.2	NC_052528	NC_052528.2	Drosophila yakuba strain Tai18E2 chromosome 2R; Prin_Dyak_Tai18E2_2.1; whole genome shotgun sequence.	6779693	6777806	5129995	5127740	100	23815334	0.28	0.28	0.22	0.22	0.43	0.9564	0.0004	0.9996	1.9861	1583	1607	3190	4581573	4401647	3567520	3495728	0	16046468	0.28	0.26	0.23	0.23	0.46	0.9191	0.109	0.9011	1.9829	32146	1329	1393	2722	1076896	879250	1120110	1111819	4188075	0.26	0.22	0.26	0.26	0.52	0.8845	0.2514	0.7936	1.9622	2	1726577	1806430	1239189	1195839	0	5968035	0.3	0.34	0.19	0.17	0	0.36	0.8531	0.2759	0.7747	1.9028	0	135	141	276	154992	144454	107290	108069	514805	0.31	0.28	0.2	0.21	0	0.41	0.8863	0.2195	0.8152	1.9448	87610	89513	60807	59879	297809	0.3	0.35	0.18	0.17	0	0.34	0.8473	0.294	0.7661	1.8798	37	36	73	974	1200	1467	1742	5383	0.18	0.22	0.27	0.32	0	0.6	0.8841	0.2179	0.8102	1.9573	75	0	75	1959	1874	2475	2616	8924	0.22	0.21	0.28	0.29	0	0.57	0.9044	0.0498	0.9515	1.9851	29775	37943	9557	17377	26891	39817	22524	19395	25018	26130	22301	27668	17935	20404	18049	28187	14564	29418	25088	17947	40961	15382	19989	28032	38358	24843	12914	21134	13054	27557	27881	16021	17837	13620	21712	25256	23085	21304	19341	35281	30193	23705	25880	28175	24872	14796	11742	18419	12686	18462	20181	21977	9706	16499	20364	28997	4601	19165	21889	12382	28176	7374	13230	20038
GCF_016746365.2	NC_052529	NC_052529.2	Drosophila yakuba strain Tai18E2 chromosome 3L; Prin_Dyak_Tai18E2_2.1; whole genome shotgun sequence.	7231266	7261746	5349398	5338152	199	25180761	0.29	0.29	0.21	0.21	0.42	0.9575	0.0032	0.9969	1.9835	1525	1527	3052	5116220	4904951	3883734	3798075	0	17702980	0.28	0.26	0.23	0.23	0.46	0.9192	0.114	0.897	1.9819	52450	1379	1352	2731	1099003	890707	1159064	1139662	4288436	0.26	0.22	0.26	0.26	0.52	0.8835	0.2574	0.7903	1.9591	1	1963378	2029005	1361644	1315036	0	6669063	0.3	0.34	0.18	0.17	0	0.35	0.8541	0.2698	0.7795	1.8957	0	97	125	222	161531	153840	111922	112570	539863	0.31	0.28	0.21	0.21	0	0.41	0.8897	0.1884	0.8391	1.9526	97009	100429	65407	66067	328912	0.3	0.35	0.18	0.17	0	0.35	0.8512	0.3025	0.7596	1.889	26	24	50	693	870	976	1184	3723	0.19	0.23	0.26	0.32	0	0.58	0.8796	0.2387	0.7948	1.9643	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30144	38457	9372	17887	28521	39855	23821	19413	25996	26189	22445	27795	18254	20655	18458	28828	14578	30860	24566	17666	41165	15992	21007	28537	41025	26029	13083	21341	13513	29741	28721	15614	18002	13352	21255	24931	24468	22356	19862	37355	31944	23829	25477	28965	25491	14711	11544	18432	13067	19238	20818	22815	9311	17134	20866	31042	4790	18965	22951	12565	29654	7421	13984	20483
GCF_016746365.2	NC_052530	NC_052530.2	Drosophila yakuba strain Tai18E2 chromosome 3R; Prin_Dyak_Tai18E2_2.1; whole genome shotgun sequence.	8716772	8751796	6626587	6635518	100	30730773	0.28	0.28	0.22	0.22	0.43	0.9573	0.0027	0.9973	1.9864	1875	1919	3794	6387942	6154239	4966537	4859388	0	22368106	0.28	0.26	0.23	0.23	0.46	0.921	0.1081	0.9018	1.9847	39496	1688	1681	3369	1356854	1105808	1449451	1432318	5344431	0.26	0.22	0.26	0.27	0.53	0.8849	0.2463	0.797	1.963	56	2510997	2617944	1794074	1738459	0	8661474	0.3	0.34	0.19	0.17	0	0.36	0.855	0.2677	0.7807	1.9016	6089	143	147	290	182182	170582	124640	126601	604005	0.3	0.28	0.21	0.21	0	0.42	0.8907	0.2045	0.8284	1.9528	80066	82732	54076	54232	271106	0.31	0.35	0.17	0.17	0	0.34	0.8448	0.2848	0.7722	1.8794	33	49	82	1202	1387	1531	1965	6085	0.2	0.23	0.25	0.32	0	0.57	0.8857	0.2228	0.8092	1.9682	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38354	47551	11516	21922	35940	50888	28887	23605	31628	32969	27671	33961	23046	26473	22524	35675	18474	38649	31494	22139	52174	19814	26191	35130	49764	31753	16140	25841	15862	36071	35466	19460	22959	16217	27587	32839	30263	27427	24632	46183	39749	31121	30259	37487	32682	18069	14929	22742	16279	23859	26777	29217	11120	21137	25368	38154	5709	25100	29100	15704	36003	8864	17204	25653
GCF_016746365.2	NC_052531	NC_052531.2	Drosophila yakuba strain Tai18E2 chromosome 4; Prin_Dyak_Tai18E2_2.1; whole genome shotgun sequence.	457984	463351	254019	254448	0	1429802	0.32	0.32	0.18	0.18	0.36	0.943	0.0067	0.9934	1.939	50	57	107	402276	390407	215079	216208	0	1223970	0.33	0.32	0.18	0.18	0.36	0.917	0.076	0.9298	1.9322	3658	34	50	84	81151	64457	52035	51776	249419	0.33	0.26	0.2	0.21	0.41	0.8827	0.2505	0.791	1.9469	0	169444	175234	86358	86780	0	517816	0.35	0.38	0.14	0.14	0	0.28	0.8381	0.2236	0.8176	1.8236	0	14	8	22	14935	14007	7682	7779	44403	0.33	0.31	0.18	0.18	0	0.35	0.8798	0.1704	0.8534	1.918	19797	19972	11238	11367	62374	0.32	0.37	0.15	0.15	0	0.3	0.8511	0.2606	0.7885	1.8419	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2243	1928	1171	1336	1483	1170	1085	2099	874	1148	2560	2110	1530	1036	1320	1841	1153	1076	1168	1784	1398	830	814	1606	1701	917	1230	1845	1343	1299	1252	1346	868	2031	1942	1087	1120	668	997	810	1349	644	3470	736	985	1221	577	1107	855	1472	936	776	1937	767	887	1502	725	617	804	649	2631	1347	868	889
NA	NC_001322	NC_001322.1	Drosophila yakuba mitochondrion; complete genome.	6326	6263	1949	1481	0	16019	0.39	0.39	0.12	0.09	0.21	0.8871	0.1414	0.875	1.7464	23	14	37	5039	6415	1523	1815	0	14792	0.36	0.41	0.1	0.13	0.23	0.8376	0.2926	0.7634	1.7417	9	3	1	4	915	1243	383	351	2892	0.32	0.44	0.12	0.12	0.24	0.8495	0.2844	0.7579	1.763	1	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	548	574	145	198	1465	0.37	0.39	0.1	0.14	0	0.23	0.835	0.2712	0.784	1.7528	0	2	2	873	858	139	245	2115	0.41	0.4	0.07	0.12	0	0.19	0.8126	0.2854	0.774	1.6822	6	1	27	30	13	0	34	89	2	0	44	17	30	0	5	6	16	0	6	79	0	18	0	14	0	1	8	4	32	40	3	11	0	35	31	3	8	0	11	2	1	0	11	0	1	29	2	15	7	28	0	0	127	28	0	15	0	0	1	4	20	4	32	13