GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_030247185.1	NC_080570	NC_080570.1	Malaya genurostris strain Urasoe2022 chromosome 1; Malgen_1.1; whole genome shotgun sequence.	52002829	51990818	31098798	31115976	32000	166240421	0.31	0.31	0.19	0.19	0.37	0.9425	0.0004	0.9996	1.9538	1871	1873	3744	33454823	33455440	20221645	20291190	10000	107433098	0.31	0.29	0.2	0.21	0.41	0.9198	0.1028	0.9081	1.9621	335733	1662	1681	3343	1711821	1400983	1348991	1429392	5891187	0.29	0.24	0.23	0.25	0.47	0.8873	0.252	0.7923	1.9624	676	19363352	19639717	11530775	11474288	5500	62013632	0.29	0.36	0.17	0.18	0.35	0.8626	0.274	0.7819	1.8908	757892	107	103	210	99378	94536	59790	61430	315134	0.32	0.29	0.19	0.2	0.39	0.8822	0.2197	0.8149	1.9391	180621	181318	105694	105318	572951	0.31	0.37	0.15	0.17	0.32	0.8365	0.3075	0.754	1.8576	50	35	85	1177	1522	1611	1982	6292	0.19	0.24	0.26	0.32	0.57	0.8825	0.2572	0.7797	1.9639	37	18	55	26154	25350	22353	26187	100044	0.28	0.23	0.23	0.26	0.49	0.9072	0.1397	0.876	1.9927	41410	45287	23826	26738	34031	33834	29047	39547	26131	30049	43390	63355	33096	32220	30078	45532	22315	33758	38722	34042	39738	29853	19827	49010	38706	29971	21640	35713	24330	39832	40939	22311	23388	23846	35195	31087	28171	14490	29243	27200	28341	17839	64678	21850	25858	33297	14434	26602	25132	28953	34869	22266	21249	17091	17764	31051	9892	29642	33596	23441	46695	14168	23157	37052
GCF_030247185.1	NC_080571	NC_080571.1	Malaya genurostris strain Urasoe2022 chromosome 2; Malgen_1.1; whole genome shotgun sequence.	110607107	110471145	65932542	65917566	76000	353004360	0.31	0.31	0.19	0.19	0.37	0.9373	0.0007	0.9993	1.9533	2975	2922	5897	68956320	69031930	41361854	41524297	34500	220908901	0.31	0.29	0.19	0.21	0.4	0.9177	0.0984	0.9109	1.9567	462199	2501	2531	5032	2758937	2254736	2088686	2205205	9307564	0.29	0.25	0.22	0.24	0.46	0.8864	0.2555	0.79	1.9598	21	42562051	43069552	25388219	25337022	25000	136381844	0.3	0.36	0.17	0.17	0.34	0.8609	0.262	0.79	1.8886	0	223	217	440	155622	149426	92308	97777	495133	0.32	0.29	0.18	0.2	0.38	0.8816	0.2149	0.8178	1.937	381636	387507	223738	223983	1216864	0.31	0.39	0.14	0.16	0.3	0.8207	0.3171	0.7494	1.8404	47	56	103	1437	1760	1949	2466	7612	0.19	0.23	0.25	0.32	0.58	0.8886	0.2358	0.7966	1.9649	156	54	210	61823	60454	52528	61908	236713	0.26	0.23	0.24	0.27	0.51	0.9002	0.1145	0.8963	1.9932	65541	70834	39109	43715	54864	53472	46017	65634	39424	47880	73918	102120	52918	48304	46763	72519	36299	50722	60575	56183	58874	44046	32354	78700	60070	45039	36445	58476	40824	60597	62610	37853	36643	42259	57223	48084	42252	23206	45450	38654	44206	27479	106835	32314	39824	55100	21436	44742	39363	46923	51681	33267	37288	28089	28425	49536	16516	40902	47756	36106	75798	22957	36116	56986
GCF_030247185.1	NC_080572	NC_080572.1	Malaya genurostris strain Urasoe2022 chromosome 3; Malgen_1.1; whole genome shotgun sequence.	95707833	95756718	56695080	56686195	42000	304887826	0.31	0.31	0.19	0.19	0.37	0.9392	0.0003	0.9997	1.9521	2724	2757	5481	61290986	61453712	36567201	36671291	18000	196001190	0.31	0.3	0.19	0.2	0.39	0.9191	0.0966	0.9134	1.9554	69420	2436	2402	4838	2628531	2138242	1960711	2058983	8786467	0.3	0.25	0.22	0.24	0.46	0.8857	0.2606	0.7859	1.959	51	37196888	37725490	22073880	21943965	11000	118951223	0.3	0.36	0.16	0.17	0.34	0.8601	0.2585	0.7922	1.8872	0	193	212	405	142380	134254	85182	89350	451166	0.32	0.29	0.19	0.2	0.39	0.8817	0.2207	0.8135	1.9389	475191	485883	278846	279506	1519426	0.31	0.37	0.15	0.16	0.32	0.8375	0.2954	0.7635	1.8554	31	45	76	1054	1305	1456	1791	5606	0.19	0.23	0.26	0.32	0.57	0.8928	0.2337	0.7988	1.9636	35	38	73	37337	36346	31175	36894	141752	0.28	0.23	0.23	0.26	0.49	0.9093	0.1415	0.8749	1.9925	61629	65996	36834	43818	51117	50274	44330	63722	37172	44350	70568	98050	51156	45784	45587	69394	35043	46539	56389	53728	53453	41776	29352	74389	56394	41581	35092	54710	39753	57007	58838	35955	33075	40519	56878	44893	39195	20975	42573	34618	41644	24735	101291	29569	36979	51929	19503	42135	37596	43778	48525	30691	36188	27193	26515	48873	15619	36828	44284	33469	73593	21948	34132	53178