GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_021155785.1	NC_060239	NC_060239.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 1; iyNeoFabr1.1; whole genome shotgun sequence.	12046063	12076422	8105104	8103917	500	40332006	0.3	0.3	0.2	0.2	0.4	0.9557	0.0013	0.9987	1.972	1017	976	1993	9001746	9074388	6018888	6008979	200	30104201	0.31	0.3	0.2	0.2	0.4	0.924	0.0787	0.9275	1.9587	85933	888	843	1731	929838	734696	704608	742918	3112060	0.3	0.24	0.22	0.24	0.46	0.882	0.271	0.7777	1.9573	0	4963319	5159149	3289055	3232943	100	16644566	0.31	0.35	0.17	0.17	0.34	0.8749	0.2051	0.8258	1.9032	0	113	104	217	61953	57206	39882	43276	202317	0.3	0.27	0.2	0.23	0.43	0.8726	0.3003	0.7684	1.9261	336865	346359	232202	232052	1147478	0.31	0.34	0.17	0.18	0.35	0.8811	0.1792	0.8465	1.9101	14	20	34	464	579	670	825	2538	0.18	0.23	0.26	0.32	0.59	0.8725	0.2822	0.7612	1.9552	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21479	25411	12259	15027	17231	21417	15377	20084	13030	15363	23900	32213	18044	17010	14370	21681	13688	13953	17963	17950	18467	12717	14877	21530	21499	14499	10541	20112	12981	19454	18205	14948	14645	16371	19852	19054	14269	9491	15478	13413	15588	8996	35073	12290	12972	16038	9317	21284	11318	13556	16051	12509	13537	11886	13414	16131	6117	10888	13613	10200	24641	8838	13364	16514
GCF_021155785.1	NC_060240	NC_060240.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 2; iyNeoFabr1.1; whole genome shotgun sequence.	12635227	12611168	8345393	8334544	600	41926932	0.3	0.3	0.2	0.2	0.4	0.9559	0.0016	0.9984	1.9697	1070	1202	2272	9943109	10004205	6465057	6475414	300	32888085	0.31	0.3	0.19	0.2	0.39	0.9235	0.0752	0.9307	1.9548	125379	933	1037	1970	1072836	846965	807997	875035	3602833	0.3	0.24	0.22	0.24	0.46	0.8826	0.2715	0.7769	1.9583	1	5099048	5329889	3276933	3209739	200	16915809	0.31	0.35	0.17	0.17	0.34	0.8737	0.2078	0.8241	1.8978	0	124	135	259	81639	77278	52497	55711	267125	0.29	0.27	0.21	0.23	0.44	0.8751	0.2849	0.7765	1.9236	518983	533625	352891	353105	1758604	0.31	0.34	0.17	0.18	0.35	0.8836	0.1849	0.8441	1.9084	12	14	26	356	413	486	657	1912	0.19	0.22	0.25	0.34	0.59	0.8848	0.2572	0.779	1.9524	1	0	1	26	24	33	36	119	0.22	0.2	0.28	0.3	0	0.58	0.887	0.0835	0.9199	1.9803	24296	30539	14100	17477	19731	25554	18410	22798	14249	18513	26521	38464	20451	19399	16228	25059	15632	16689	20878	20916	21634	14761	16679	25512	24021	15619	11763	23174	14643	23218	21022	17160	17188	18590	23182	22401	15683	10143	17733	15490	18751	11018	40415	14855	15822	19548	11122	24162	12861	15344	18512	14683	14900	13793	16091	18394	6963	12834	15492	11798	28061	10095	15754	19944
GCF_021155785.1	NC_060241	NC_060241.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 3; iyNeoFabr1.1; whole genome shotgun sequence.	12370090	12381778	8194741	8189791	400	41136800	0.3	0.3	0.2	0.2	0.4	0.9519	0.0008	0.9992	1.9699	997	977	1974	9060574	9107307	5959782	5969009	100	30096772	0.31	0.3	0.19	0.2	0.39	0.9238	0.078	0.9279	1.9558	49382	863	849	1712	931868	739125	694290	746596	3111879	0.3	0.24	0.22	0.24	0.46	0.8831	0.2636	0.7827	1.9592	0	4402986	4586336	2885535	2834620	0	14709477	0.31	0.35	0.17	0.17	0.34	0.8756	0.1982	0.8312	1.9019	0	133	101	234	60088	55903	40707	43219	199917	0.3	0.27	0.2	0.23	0.43	0.87	0.3006	0.7643	1.9059	305248	313928	199948	197078	1016202	0.31	0.34	0.18	0.18	0.35	0.883	0.1752	0.8504	1.9133	10	12	22	306	365	423	520	1614	0.19	0.23	0.26	0.32	0.58	0.8922	0.2279	0.8002	1.9658	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21630	25686	12724	15086	17662	21324	15857	20219	12240	16233	24324	32912	17833	16980	14616	21648	13633	14524	17587	18171	18168	12562	14188	22434	20986	14037	10323	20257	13097	19130	18474	15126	14980	16490	20250	19238	13693	8547	14937	13190	15649	9028	35310	11979	13294	16748	9355	20196	11337	14006	15632	12686	13281	11735	13451	15666	6070	10570	13050	10466	24588	8900	13369	16583
GCF_021155785.1	NC_060242	NC_060242.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 4; iyNeoFabr1.1; whole genome shotgun sequence.	12798827	12745683	8346612	8393255	400	42284777	0.3	0.3	0.2	0.2	0.4	0.9515	0.0049	0.9951	1.9685	1159	1143	2302	9603504	9702431	6229673	6231457	100	31767165	0.31	0.3	0.19	0.2	0.39	0.9228	0.0765	0.9291	1.9559	231389	967	953	1920	1000311	801109	764021	811690	3377131	0.3	0.24	0.22	0.24	0.46	0.882	0.2676	0.7802	1.9585	49	4986427	5226503	3208861	3144032	100	16565923	0.31	0.35	0.17	0.17	0.34	0.8744	0.2076	0.8241	1.8982	625	137	121	258	84476	79651	55021	57221	276369	0.29	0.27	0.21	0.23	0.44	0.8756	0.2702	0.7886	1.9294	378344	386936	240802	242632	1248714	0.31	0.33	0.18	0.18	0.36	0.8847	0.1813	0.8454	1.9182	5	16	21	281	347	416	528	1572	0.18	0.22	0.26	0.33	0.59	0.891	0.2408	0.791	1.9544	41	50	91	21708	21294	22097	25901	91000	0.24	0.22	0.26	0.29	0	0.54	0.909	0.0951	0.9114	1.9891	23086	26908	13260	16385	19124	23086	17365	21600	13916	17414	25171	33845	19473	18088	15634	23167	14795	14950	19499	19608	20269	14138	16074	23461	22579	15091	11451	21560	14375	21609	19829	16213	16334	18029	21560	20637	15223	9681	16692	14815	17771	10085	37109	13391	14893	18163	10315	22355	12483	14853	17313	13917	14427	12984	14632	17358	6608	11556	14789	10871	26838	9703	14840	18598
GCF_021155785.1	NC_060243	NC_060243.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 5; iyNeoFabr1.1; whole genome shotgun sequence.	10762039	10769826	7000429	6983528	200	35516022	0.3	0.3	0.2	0.2	0.39	0.9533	0.0016	0.9984	1.9672	1032	1023	2055	8192089	8229854	5339183	5344431	100	27105657	0.31	0.3	0.19	0.2	0.4	0.9236	0.0755	0.93	1.9589	53576	893	849	1742	940001	753946	738040	784122	3216109	0.29	0.24	0.22	0.24	0.47	0.8834	0.2635	0.7827	1.9616	4	4278917	4477071	2746659	2689254	100	14192001	0.31	0.35	0.17	0.17	0.34	0.8724	0.2222	0.8132	1.9005	0	117	111	228	76782	70632	47756	50664	245834	0.3	0.27	0.21	0.23	0.43	0.8772	0.2854	0.7795	1.9193	413037	425355	275397	277770	1391559	0.31	0.33	0.18	0.18	0.36	0.8839	0.1974	0.8344	1.917	25	44	69	926	1166	1342	1643	5077	0.18	0.23	0.26	0.32	0.59	0.8922	0.2372	0.7923	1.9629	2	2	4	103	93	131	149	476	0.22	0.2	0.28	0.31	0	0.59	0.8868	0.1153	0.8912	1.9747	21438	25968	12181	15539	17842	23143	16669	19472	13309	16349	22917	31842	18373	18219	14302	22247	14298	14371	18917	18525	19857	13547	15465	22125	22798	14577	10539	20591	12883	20809	18664	15629	15900	16635	20222	20579	14570	9308	16259	14649	16783	10116	34233	13124	13884	17270	9774	20584	11304	13917	17535	13889	12650	12398	14568	16259	5748	12128	14479	11045	24583	8708	13656	18181
GCF_021155785.1	NC_060244	NC_060244.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 6; iyNeoFabr1.1; whole genome shotgun sequence.	9061290	9063043	6294354	6288225	300	30707212	0.3	0.3	0.2	0.2	0.41	0.9554	0.0006	0.9994	1.9764	814	764	1578	7339106	7425661	5161224	5146922	0	25072913	0.31	0.3	0.2	0.2	0.4	0.9239	0.0779	0.9282	1.9595	46790	707	661	1368	722418	571398	546529	584960	2425305	0.3	0.24	0.22	0.24	0.46	0.8813	0.2717	0.7769	1.9563	1	3559645	3753502	2533971	2473057	0	12320175	0.31	0.35	0.17	0.17	0.35	0.8731	0.2142	0.8187	1.902	0	87	86	173	46905	43570	30421	33002	153898	0.29	0.26	0.21	0.24	0.45	0.8614	0.3338	0.7499	1.9133	424183	431425	298924	300019	1454551	0.31	0.34	0.17	0.18	0.35	0.8823	0.178	0.8506	1.9095	13	10	23	290	374	466	557	1687	0.17	0.22	0.28	0.33	0.61	0.8828	0.2257	0.8018	1.9497	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16312	20107	9302	11763	13124	16813	12358	15476	9860	12421	18470	24969	13839	13245	11315	16583	10521	10673	13825	14385	14163	10183	11170	17015	16384	11052	7998	15335	10050	15522	13801	11550	11458	12621	15334	15105	10989	7110	12051	10524	12538	7133	27667	9939	10314	12892	7462	16013	8771	10357	12699	10069	10388	9380	10706	12464	4760	8582	10693	7985	19023	6961	10624	13390
GCF_021155785.1	NC_060245	NC_060245.1	Neodiprion fabricii isolate iyNeoFabr1 chromosome 7; iyNeoFabr1.1; whole genome shotgun sequence.	7626544	7614185	4879405	4861251	400	24981785	0.31	0.3	0.2	0.19	0.39	0.951	0.0027	0.9973	1.9647	625	578	1203	5705318	5711605	3630571	3658848	300	18706642	0.31	0.3	0.2	0.2	0.4	0.9223	0.0818	0.9248	1.9592	49681	538	491	1029	521750	410280	404642	442755	1779427	0.29	0.24	0.22	0.25	0.47	0.8821	0.2721	0.777	1.9615	0	2651384	2743451	1659010	1637941	300	8692086	0.31	0.35	0.18	0.17	0.35	0.8759	0.2142	0.8194	1.9077	2049	74	74	148	40689	37182	25670	27928	131469	0.3	0.27	0.21	0.23	0.43	0.8587	0.31	0.759	1.9242	448497	461025	284117	282603	1476242	0.31	0.33	0.18	0.18	0.36	0.8832	0.1887	0.8417	1.9118	2	5	7	103	115	133	166	517	0.2	0.22	0.26	0.32	0.58	0.8932	0.2321	0.7992	1.9669	8	0	8	199	184	264	305	952	0.21	0.19	0.28	0.32	0	0.6	0.8754	0.1113	0.8953	1.9695	11335	15266	6617	8285	9353	13578	8803	10820	7200	8904	12366	18644	9859	10690	8050	12516	7433	8139	10968	10275	10691	7768	8209	12891	11921	8002	5199	11043	6828	12097	10696	8425	8935	8853	10939	12091	7548	5045	8948	7789	9198	5862	19207	7477	7330	9478	5781	11894	5820	7220	10325	8149	6681	6499	8422	8686	2951	6985	8417	6241	13225	4388	7210	10708