GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_021901455.1	NC_060260	NC_060260.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 1; iyNeoLeco1.1; whole genome shotgun sequence.	12404622	12404110	8297918	8303398	400	41410448	0.3	0.3	0.2	0.2	0.4	0.9553	0.0004	0.9996	1.9715	1019	1009	2028	9258192	9340130	6173963	6159588	200	30932073	0.31	0.3	0.2	0.2	0.4	0.9235	0.083	0.9247	1.9577	115051	891	879	1770	942526	745043	712375	751656	3151600	0.3	0.24	0.22	0.24	0.46	0.8817	0.2734	0.7765	1.9562	0	4895081	5097923	3239345	3174483	100	16406932	0.31	0.35	0.17	0.17	0.34	0.8744	0.206	0.8254	1.902	112	92	204	62853	58361	40347	44005	205566	0.3	0.27	0.2	0.23	0.43	0.8727	0.2949	0.7699	1.93	290383	298431	202900	201105	0	992819	0.31	0.34	0.17	0.17	0.35	0.8786	0.1794	0.8461	1.9071	13	21	34	464	579	670	825	2538	0.18	0.23	0.26	0.32	0.59	0.8725	0.2822	0.7612	1.9552	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21662	25627	12568	15447	17390	21892	15668	20486	13211	15622	24096	32858	18311	17068	14472	21754	13929	14177	18201	18171	18531	12861	15220	21920	21559	14678	10720	20405	13188	19799	18508	15197	14607	16559	20176	19189	14468	9585	15564	13372	15604	9072	35651	12244	13101	16256	9455	21644	11469	13826	16168	12609	13787	12099	13637	16326	6144	11152	13676	10292	25130	8961	13479	16638
GCF_021901455.1	NC_060261	NC_060261.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 2; iyNeoLeco1.1; whole genome shotgun sequence.	13357828	13353590	8807114	8808743	1600	44328875	0.3	0.3	0.2	0.2	0.4	0.9561	0.0003	0.9997	1.9694	1120	1248	2368	10290865	10354663	6647564	6667653	500	33961245	0.31	0.3	0.19	0.2	0.39	0.9231	0.0776	0.9284	1.9542	133010	988	1064	2052	1109552	875250	832091	900811	3717704	0.3	0.24	0.22	0.24	0.46	0.8827	0.2711	0.7773	1.9585	0	5122840	5359930	3270658	3211243	400	16965071	0.31	0.35	0.17	0.17	0.34	0.8737	0.2083	0.8237	1.8977	117	145	262	88416	83860	56754	61196	290226	0.29	0.26	0.2	0.24	0.44	0.8764	0.2832	0.7798	1.9305	492186	505809	335255	335632	0	1668882	0.31	0.34	0.17	0.18	0.35	0.881	0.1908	0.8384	1.9032	12	19	31	425	478	581	793	2277	0.19	0.21	0.25	0.35	0.6	0.8809	0.2497	0.7851	1.9496	1	0	1	26	23	34	36	119	0.22	0.19	0.29	0.3	0	0.59	0.887	0.0898	0.9145	1.976	25081	31687	14643	17944	20496	26364	19036	23681	14599	19000	27746	39722	21353	20024	16742	25941	16082	17182	21505	21725	22230	15240	17478	26266	24569	15956	12209	23915	15199	23908	21711	17687	17362	19196	23749	23188	16032	10333	18243	16017	19375	11249	42174	15053	16285	20205	11323	24893	13311	15884	19103	15326	15718	14151	16631	19055	7066	13116	15940	12152	29054	10353	16061	20465
GCF_021901455.1	NC_060262	NC_060262.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 3; iyNeoLeco1.1; whole genome shotgun sequence.	12937925	12958613	8545984	8535951	700	42979173	0.3	0.3	0.2	0.2	0.4	0.9488	0.0014	0.9986	1.9694	1025	1027	2052	9327272	9370452	6103269	6110591	300	30911884	0.31	0.3	0.19	0.2	0.39	0.9228	0.0844	0.9238	1.954	17466	881	874	1755	946365	748860	701579	754433	3151237	0.3	0.24	0.22	0.24	0.46	0.8827	0.2637	0.7828	1.9584	0	5008283	5194547	3270036	3217550	300	16690716	0.31	0.35	0.17	0.17	0.34	0.8751	0.2001	0.83	1.9009	132	126	258	77429	71578	50999	53722	253728	0.3	0.26	0.21	0.23	0.44	0.8735	0.2938	0.7714	1.9261	327887	335700	214028	212361	0	1089976	0.31	0.34	0.18	0.17	0.35	0.8799	0.1828	0.8452	1.9071	10	12	22	306	365	423	520	1614	0.19	0.23	0.26	0.32	0.58	0.8922	0.2279	0.8002	1.9658	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21948	25957	12924	15326	18270	21496	15972	20680	12381	16320	24458	33295	17942	17043	14737	22115	13689	14776	17935	18562	18321	12666	14173	22540	21287	14040	10427	20472	13436	19418	18671	15192	15098	16942	20780	19217	13772	8589	15242	13301	16164	9097	36031	12181	13560	16869	9364	20356	11590	14177	15633	12711	13585	11767	13693	15836	6211	10578	13100	10546	25284	9028	13527	16726
GCF_021901455.1	NC_060263	NC_060263.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 4; iyNeoLeco1.1; whole genome shotgun sequence.	12724335	12657156	8280252	8303151	1100	41965994	0.3	0.3	0.2	0.2	0.4	0.9522	0.004	0.996	1.968	1127	1158	2285	10006656	10106313	6474735	6467760	600	33056064	0.31	0.3	0.19	0.2	0.39	0.9229	0.0739	0.9313	1.9545	89869	970	968	1938	1005428	805309	765655	816570	3392962	0.3	0.24	0.22	0.24	0.46	0.8818	0.2685	0.7796	1.9577	47	5271178	5520893	3393812	3324651	300	17510834	0.31	0.35	0.17	0.17	0.34	0.8744	0.2073	0.8243	1.8975	133	126	259	100287	95252	64907	67321	327767	0.29	0.27	0.21	0.23	0.43	0.8808	0.2381	0.8073	1.9416	379956	392696	245815	243139	0	1261606	0.31	0.34	0.18	0.18	0.35	0.8816	0.1813	0.8453	1.9108	6	16	22	293	364	435	552	1644	0.18	0.22	0.26	0.33	0.59	0.8916	0.2428	0.7892	1.9546	16	34	50	8875	8597	9476	11144	38092	0.23	0.21	0.27	0.3	0	0.56	0.8975	0.1018	0.9051	1.982	23044	27113	13216	16413	19242	23270	17554	21749	13978	17464	25218	34205	19513	17985	15718	23206	14815	14978	19717	19878	20179	14156	16030	23779	22514	15240	11379	21657	14493	21915	19868	16270	16428	18014	21626	20665	15218	9747	16730	14860	17875	10079	37449	13498	15000	18327	10413	22697	12551	14796	17442	14032	14487	12991	14794	17314	6673	11583	14718	10972	26743	9805	15129	18665
GCF_021901455.1	NC_060264	NC_060264.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 5; iyNeoLeco1.1; whole genome shotgun sequence.	11133710	11157796	7194845	7191749	700	36678800	0.3	0.3	0.2	0.2	0.39	0.9521	0.0013	0.9987	1.9662	1079	1041	2120	8624407	8645789	5596767	5594873	500	28462336	0.31	0.3	0.19	0.2	0.39	0.9237	0.0769	0.9291	1.9581	52968	929	881	1810	974896	779593	759786	807888	3322163	0.29	0.24	0.22	0.24	0.47	0.8835	0.2633	0.7831	1.9619	775	4320182	4523166	2753731	2694622	400	14292101	0.31	0.35	0.17	0.17	0.34	0.8727	0.2215	0.8136	1.9003	118	114	232	79264	74206	50566	53941	257977	0.3	0.27	0.2	0.23	0.43	0.8774	0.2541	0.7978	1.9371	438249	455015	289023	289121	100	1471508	0.31	0.34	0.17	0.17	0.35	0.8791	0.1938	0.8368	1.9064	25	31	56	771	950	1088	1332	4141	0.19	0.23	0.26	0.32	0.58	0.8902	0.2308	0.7977	1.9644	2	1	3	77	70	98	112	357	0.22	0.2	0.27	0.31	0	0.59	0.8868	0.1143	0.8921	1.9747	22103	26810	12622	16251	18383	23939	17201	20429	13613	16856	23918	33144	19170	18881	14957	23040	14813	14892	19442	19231	20496	13921	15872	22739	23581	15017	10775	21320	13343	21524	19420	16055	16322	17249	21186	21180	14826	9445	16795	14818	17539	10289	35947	13665	14155	17787	9945	21285	11671	14381	17991	14291	13270	12810	14934	16762	5874	12286	14952	11379	25418	8947	13901	18577
GCF_021901455.1	NC_060265	NC_060265.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 6; iyNeoLeco1.1; whole genome shotgun sequence.	9370759	9372525	6494440	6480351	800	31718875	0.3	0.3	0.2	0.2	0.41	0.9546	0.0012	0.9988	1.976	811	773	1584	7202934	7274823	5051283	5050757	500	24580297	0.31	0.3	0.19	0.2	0.4	0.9237	0.0798	0.9262	1.9592	8478	704	682	1386	736445	581607	558164	598780	2474996	0.29	0.24	0.22	0.24	0.46	0.8818	0.2712	0.7773	1.9567	1	3652402	3841224	2575946	2521265	400	12591237	0.31	0.35	0.17	0.17	0.35	0.8729	0.2145	0.8184	1.9021	80	76	156	43717	41321	29726	31509	146273	0.29	0.26	0.21	0.24	0.45	0.8709	0.3069	0.763	1.9224	421025	427624	298213	301730	0	1448592	0.3	0.33	0.18	0.19	0.36	0.8823	0.1822	0.8458	1.9175	13	12	25	309	402	509	610	1830	0.17	0.22	0.28	0.33	0.61	0.8819	0.2311	0.7974	1.9457	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16385	20590	9525	12230	13401	17363	12694	15755	10053	12579	18687	25719	14072	13534	11485	16736	10982	10952	14050	14643	14363	10459	11384	17563	16585	11258	8096	15514	10126	15850	14068	11738	11671	12761	15637	15501	11152	7263	12197	10756	12723	7296	28381	10199	10462	13166	7876	16337	8971	10473	12882	10506	10528	9663	11041	12953	4764	8857	10924	8190	19327	6950	10641	13656
GCF_021901455.1	NC_060266	NC_060266.1	Neodiprion lecontei isolate iyNeoLeco1 chromosome 7; iyNeoLeco1.1; whole genome shotgun sequence.	8172052	8162694	5249243	5244796	900	26829685	0.3	0.3	0.2	0.2	0.39	0.9499	0.001	0.999	1.9655	657	630	1287	6079828	6091119	3873070	3893486	800	19938303	0.31	0.29	0.2	0.2	0.4	0.9217	0.0886	0.9197	1.9582	45709	568	528	1096	559124	439868	435033	473120	1907145	0.29	0.24	0.22	0.25	0.47	0.8826	0.2708	0.7779	1.9609	0	3109333	3209506	1961867	1939488	500	10220694	0.31	0.35	0.18	0.17	0.35	0.8762	0.2144	0.8193	1.9077	69	88	157	49629	44573	30642	32643	157487	0.3	0.27	0.2	0.23	0.43	0.866	0.3328	0.7489	1.9099	504184	522388	326734	321187	100	1674593	0.31	0.34	0.17	0.17	0.35	0.8812	0.1883	0.8422	1.904	2	5	7	103	115	133	166	517	0.2	0.22	0.26	0.32	0.58	0.8932	0.2321	0.7992	1.9669	9	0	9	228	206	299	338	1071	0.21	0.19	0.28	0.32	0	0.59	0.8759	0.1115	0.8949	1.9712	11914	15902	7086	8933	10270	14502	9550	11676	7583	9503	13306	20359	10749	11430	8512	13318	8128	8631	11684	11045	11150	8738	9108	13852	12709	8551	5669	11690	7414	13018	11569	9079	9509	9504	11767	12980	8078	5415	9507	8237	9683	6470	20743	8099	7687	10053	6211	12567	6203	7724	11123	8794	7263	7165	8944	9323	3034	7311	9072	6776	14529	4586	7318	11394