GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_021155775.1	NC_060232	NC_060232.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 1; iyNeoPine1.1; whole genome shotgun sequence.	12418158	12419671	8278483	8283189	1300	41400801	0.3	0.3	0.2	0.2	0.4	0.9554	0.0003	0.9997	1.971	1022	1018	2040	8974010	9058541	5973227	5955947	500	29962225	0.31	0.3	0.19	0.2	0.39	0.9235	0.0812	0.9256	1.9573	43547	882	868	1750	937001	741472	708962	748475	3135910	0.3	0.24	0.22	0.24	0.46	0.8817	0.2725	0.777	1.9567	1	4912943	5125108	3249612	3185987	400	16474050	0.31	0.35	0.17	0.17	0.34	0.8747	0.2053	0.8257	1.9026	0	129	113	242	72613	66569	46545	49390	235117	0.3	0.27	0.2	0.23	0.42	0.868	0.3079	0.7614	1.9156	0	406115	415629	270265	268086	1360095	0.32	0.34	0.17	0.17	0.34	0.8804	0.1817	0.845	1.9024	13	21	34	464	579	670	825	2538	0.18	0.23	0.26	0.32	0.59	0.8725	0.2822	0.7612	1.9552	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21530	25512	12391	15364	17279	21628	15533	20424	13193	15599	24055	32828	18245	17013	14425	21693	13816	14173	18090	18056	18392	12845	15158	21899	21509	14573	10568	20278	13071	19654	18380	15099	14572	16398	19870	19089	14460	9510	15483	13338	15612	9097	35402	12224	13070	16229	9325	21469	11464	13753	16222	12598	13722	12002	13499	16122	6131	11145	13657	10281	24870	8914	13434	16656
GCF_021155775.1	NC_060233	NC_060233.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 2; iyNeoPine1.1; whole genome shotgun sequence.	13168780	13149979	8648877	8633198	1100	43601934	0.3	0.3	0.2	0.2	0.4	0.956	0.0016	0.9984	1.9688	1098	1240	2338	10130745	10186912	6541789	6554258	700	33414404	0.31	0.3	0.19	0.2	0.39	0.9233	0.0762	0.9295	1.9544	116978	975	1063	2038	1097625	867568	826495	893027	3684715	0.3	0.24	0.22	0.24	0.46	0.8827	0.2707	0.7775	1.9584	32	5100493	5334792	3264209	3200037	500	16900031	0.31	0.35	0.17	0.17	0.34	0.8737	0.2087	0.8233	1.8978	35534	115	137	252	84148	79096	52570	57791	273605	0.29	0.27	0.2	0.24	0.44	0.8744	0.2809	0.7791	1.9295	0	444783	454034	301168	300891	1500876	0.31	0.35	0.17	0.17	0.34	0.8791	0.1948	0.8355	1.8978	13	17	30	408	468	563	765	2204	0.19	0.21	0.25	0.35	0.6	0.8825	0.2542	0.7814	1.95	1	0	1	26	23	34	36	119	0.22	0.19	0.29	0.3	0	0.59	0.887	0.0898	0.9145	1.976	24815	30742	14513	17906	20388	26258	19044	23556	14581	18912	27245	39580	21319	19905	16597	25645	16127	16982	21308	21418	22004	15025	17315	26034	24566	16025	12128	23710	14967	23705	21526	17598	17376	19038	23495	23050	15982	10283	18098	15872	19080	11155	41474	15044	16064	20038	11274	24585	13120	15642	18983	15076	15453	14044	16392	18795	7001	13042	15838	11985	28803	10294	15941	20241
GCF_021155775.1	NC_060234	NC_060234.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 3; iyNeoPine1.1; whole genome shotgun sequence.	13250210	13270255	8764108	8753632	700	44038905	0.3	0.3	0.2	0.2	0.4	0.9491	0.0014	0.9986	1.9696	1026	1027	2053	9273675	9306613	6061158	6070395	300	30712141	0.31	0.3	0.19	0.2	0.39	0.9233	0.0791	0.9274	1.9548	18982	890	880	1770	951701	756569	704120	759636	3172026	0.3	0.24	0.22	0.24	0.46	0.8829	0.2624	0.7833	1.9592	0	5044344	5226892	3294848	3236680	200	16802964	0.31	0.35	0.17	0.17	0.34	0.8756	0.1984	0.8311	1.9014	0	130	123	253	83851	78111	54627	57665	274254	0.3	0.26	0.21	0.23	0.44	0.8778	0.2868	0.7765	1.9271	0	273327	280119	174623	173376	901445	0.31	0.34	0.18	0.17	0.35	0.8805	0.1818	0.8445	1.9095	10	12	22	306	365	423	520	1614	0.19	0.23	0.26	0.32	0.58	0.8922	0.2279	0.8002	1.9658	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22208	26210	13037	15436	18049	21663	16137	20891	12480	16548	24792	33504	18066	17077	14955	22142	13789	14851	18022	18822	18680	12757	14254	22892	21356	14059	10496	20874	13543	19478	18810	15280	15292	17065	20531	19312	13814	8627	15393	13332	15928	9122	36567	12157	13574	17086	9456	20529	11714	14184	15745	12707	13755	11992	13758	15814	6300	10648	13229	10588	25104	9022	13694	16757
GCF_021155775.1	NC_060235	NC_060235.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 4; iyNeoPine1.1; whole genome shotgun sequence.	13202411	13182124	8618396	8646169	1300	43650400	0.3	0.3	0.2	0.2	0.4	0.9516	0.0024	0.9976	1.9683	1174	1163	2337	9771948	9878106	6322361	6317970	800	32291185	0.31	0.3	0.19	0.2	0.39	0.9223	0.0771	0.929	1.9544	189645	1017	943	1960	1019969	816779	776673	824858	3438279	0.3	0.24	0.22	0.24	0.46	0.8819	0.2678	0.7799	1.9584	0	5214038	5467158	3353563	3289956	600	17325315	0.31	0.35	0.17	0.17	0.34	0.8744	0.2079	0.824	1.8977	0	141	128	269	102536	95422	64911	67759	330628	0.29	0.27	0.21	0.22	0.43	0.8792	0.2632	0.7903	1.9335	0	356674	365105	226417	224368	1172564	0.31	0.34	0.18	0.18	0.35	0.8802	0.1885	0.8421	1.9057	7	15	22	293	364	435	552	1644	0.18	0.22	0.26	0.33	0.59	0.8916	0.2428	0.7892	1.9546	12	61	73	12091	11711	13035	15415	52252	0.23	0.21	0.27	0.3	0	0.57	0.8936	0.1048	0.902	1.9805	23250	27444	13557	16646	19557	23439	17709	22152	14105	17650	25767	34740	19907	18409	15972	23620	15037	15126	19921	20189	20350	14329	16430	24033	22781	15441	11587	21913	14737	22114	20271	16562	16559	18256	21982	21085	15615	9784	16970	14996	17937	10299	38086	13615	15078	18528	10400	22877	12767	15064	17681	14220	14836	13215	14768	17653	6746	11701	14869	11072	27096	9833	15053	18804
GCF_021155775.1	NC_060236	NC_060236.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 5; iyNeoPine1.1; whole genome shotgun sequence.	10945174	10974237	7057236	7049487	1500	36027634	0.3	0.3	0.2	0.2	0.39	0.9522	0.0019	0.9981	1.9658	1079	1038	2117	8431552	8464460	5454512	5462885	800	27814209	0.31	0.3	0.19	0.2	0.39	0.9235	0.0753	0.9301	1.9581	97461	928	854	1782	963260	771120	752380	800883	3287643	0.29	0.24	0.22	0.24	0.47	0.8833	0.2634	0.7828	1.9615	4	4344500	4545612	2770246	2712095	500	14372953	0.31	0.35	0.17	0.17	0.34	0.8727	0.2215	0.8136	1.9005	0	125	129	254	83699	77098	52301	55877	268975	0.3	0.27	0.2	0.23	0.43	0.8763	0.2668	0.7882	1.9358	0	446310	457133	286878	289775	1480096	0.31	0.34	0.17	0.18	0.35	0.8804	0.1955	0.8353	1.9075	25	36	61	831	1040	1179	1451	4501	0.19	0.23	0.26	0.32	0.58	0.8918	0.2389	0.7911	1.9639	2	1	3	76	70	98	113	357	0.21	0.2	0.27	0.32	0	0.59	0.8887	0.1122	0.8945	1.9731	21972	26768	12436	15687	18173	23545	16928	20169	13429	16588	23662	32221	18738	18564	14733	22982	14566	14754	19344	18938	20418	13710	15637	22385	23409	14744	10610	21083	13227	21172	19245	15902	16224	17133	20437	21005	14796	9470	16808	14803	17446	10225	35548	13507	14138	17689	9927	21169	11552	14285	17752	14233	13019	12634	14925	16465	5947	12467	14911	11377	25000	8986	13959	18560
GCF_021155775.1	NC_060237	NC_060237.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 6; iyNeoPine1.1; whole genome shotgun sequence.	9355568	9369803	6483263	6479511	1600	31689745	0.3	0.3	0.2	0.2	0.41	0.9547	0.001	0.999	1.976	816	791	1607	7368725	7448570	5158653	5158872	300	25135120	0.31	0.3	0.2	0.2	0.4	0.9235	0.0838	0.9235	1.9593	20825	707	672	1379	725048	571940	548785	587000	2432773	0.29	0.24	0.22	0.24	0.46	0.8818	0.2709	0.7777	1.9567	688	3534781	3719553	2507593	2455236	200	12217363	0.31	0.35	0.17	0.17	0.35	0.8728	0.2152	0.8181	1.9019	0	90	102	192	54409	50058	36772	39887	181126	0.29	0.25	0.21	0.25	0.46	0.8687	0.3466	0.7386	1.9197	54	506881	515268	360826	365693	1748668	0.31	0.33	0.17	0.18	0.35	0.8779	0.1837	0.8451	1.9063	13	11	24	300	388	488	583	1759	0.17	0.22	0.28	0.33	0.61	0.8822	0.2265	0.801	1.9481	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16215	20240	9455	12019	13219	16954	12465	15564	9854	12384	18372	25200	13779	13351	11303	16564	10742	10683	13795	14407	14091	10218	11192	17237	16384	11043	8020	15247	9998	15602	13870	11548	11484	12713	15505	15169	11043	7123	12049	10595	12486	7104	27894	10000	10273	12940	7544	16100	8765	10255	12577	10182	10416	9495	10769	12724	4654	8639	10827	8056	19064	6775	10444	13418
GCF_021155775.1	NC_060238	NC_060238.1	Neodiprion pinetum isolate iyNeoPine1 chromosome 7; iyNeoPine1.1; whole genome shotgun sequence.	8240559	8220369	5290807	5280627	600	27032962	0.3	0.3	0.2	0.2	0.39	0.9502	0.0022	0.9978	1.9655	645	623	1268	6064683	6076819	3853863	3873958	400	19869723	0.31	0.3	0.2	0.2	0.4	0.9217	0.0849	0.9224	1.9589	45694	557	531	1088	554898	434998	429863	468415	1888174	0.29	0.24	0.22	0.25	0.47	0.8829	0.2739	0.776	1.9609	0	3175891	3278520	2012795	1985224	200	10452630	0.3	0.35	0.18	0.17	0.35	0.8762	0.2152	0.8188	1.9075	0	71	75	146	46259	42392	28728	31388	148767	0.3	0.27	0.2	0.23	0.43	0.8714	0.3031	0.7657	1.9289	0	343039	353315	213198	214379	1123931	0.31	0.34	0.17	0.17	0.34	0.8792	0.1778	0.8478	1.901	2	5	7	103	115	133	166	517	0.2	0.22	0.26	0.32	0.58	0.8932	0.2321	0.7992	1.9669	7	0	7	179	164	227	263	833	0.21	0.2	0.27	0.32	0	0.59	0.878	0.1173	0.8898	1.9741	11863	15839	6936	8798	10114	14330	9398	11565	7539	9373	13195	20069	10631	11407	8495	13224	8069	8622	11444	10841	11140	8477	8905	13765	12620	8464	5605	11601	7294	12805	11326	8935	9343	9376	11694	12729	8042	5333	9401	8080	9604	6265	20684	7927	7705	10054	6101	12567	6181	7657	11005	8603	7104	7003	8899	9253	3093	7412	9021	6674	14485	4625	7467	11289