GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_021901495.1	NC_060877	NC_060877.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 1; iyNeoVirg1.1; whole genome shotgun sequence.	11988132	12016388	8029371	8036445	500	40070836	0.3	0.3	0.2	0.2	0.4	0.9558	0.0016	0.9984	1.9715	1013	961	1974	8904442	8985815	5941533	5932757	200	29764747	0.31	0.3	0.19	0.2	0.39	0.9241	0.0774	0.9286	1.9582	68623	875	831	1706	917344	725751	692933	732742	3068770	0.3	0.24	0.22	0.24	0.46	0.882	0.272	0.7772	1.9568	0	4822358	5023883	3189684	3134082	200	16170207	0.31	0.35	0.17	0.17	0.34	0.8747	0.2052	0.8257	1.9027	122	103	225	60804	56235	39610	42220	198869	0.3	0.26	0.21	0.23	0.44	0.8735	0.3066	0.7645	1.9252	0	351287	360449	244842	242883	0	1199461	0.31	0.34	0.18	0.18	0.35	0.8826	0.1726	0.8508	1.9106	14	20	34	464	579	670	825	2538	0.18	0.23	0.26	0.32	0.59	0.8725	0.2822	0.7612	1.9552	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21209	25175	12153	14874	16891	21103	15215	19848	12938	15177	23599	31898	17689	16676	14204	21265	13498	13718	17680	17715	18124	12586	14497	21389	21200	14196	10428	19946	12940	19233	17718	14801	14315	16116	19377	18675	14098	9340	15264	13242	15360	8797	34719	12035	12872	15957	9183	21089	11165	13467	15797	12254	13380	11760	13186	15806	6037	10754	13319	10104	24256	8799	13235	16246
GCF_021901495.1	NC_060878	NC_060878.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 2; iyNeoVirg1.1; whole genome shotgun sequence.	12952859	12936716	8503989	8501691	500	42895755	0.3	0.3	0.2	0.2	0.4	0.956	0.0008	0.9992	1.9688	1098	1214	2312	10083455	10133020	6525851	6538865	300	33281491	0.31	0.3	0.19	0.2	0.39	0.923	0.0774	0.9287	1.9541	115405	970	1048	2018	1094144	864807	822191	891007	3672149	0.3	0.24	0.22	0.24	0.46	0.8824	0.2708	0.7773	1.9583	0	5052252	5278116	3224745	3160211	200	16715524	0.31	0.35	0.17	0.17	0.34	0.8737	0.2085	0.8236	1.8975	112	131	243	75489	71339	47546	51688	246062	0.3	0.27	0.2	0.23	0.43	0.8756	0.2786	0.7816	1.9245	0	488372	495923	327826	328480	100	1640701	0.31	0.34	0.18	0.18	0.35	0.8828	0.1846	0.8444	1.9106	12	15	27	369	426	505	685	1985	0.19	0.22	0.25	0.34	0.6	0.8836	0.2551	0.7809	1.9515	1	0	1	26	25	32	36	119	0.22	0.21	0.27	0.3	0	0.57	0.8987	0.0784	0.9252	1.9837	24623	30739	14418	17929	20111	26500	18877	23610	14452	18775	27190	39713	20608	19805	16469	25162	15842	17083	21409	21423	21862	15120	16938	26031	24441	15897	12002	23595	15013	23710	21492	17439	17708	19072	23580	22931	15943	10435	17976	15727	18769	11255	41454	15075	16057	20006	11262	24509	13147	15730	18679	15033	15523	14078	16181	18715	6967	12953	15640	12089	28732	10226	15781	20313
GCF_021901495.1	NC_060879	NC_060879.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 3; iyNeoVirg1.1; whole genome shotgun sequence.	12868211	12883073	8512228	8501019	400	42764931	0.3	0.3	0.2	0.2	0.4	0.9501	0.0012	0.9988	1.9697	1025	1019	2044	9154979	9205905	5997480	6012127	100	30370591	0.31	0.3	0.19	0.2	0.39	0.9234	0.0787	0.9275	1.9551	79394	884	859	1743	946712	751001	701671	755871	3155255	0.3	0.24	0.22	0.24	0.46	0.8827	0.2639	0.7824	1.9584	0	4963325	5163046	3250717	3200258	100	16577446	0.31	0.35	0.17	0.17	0.34	0.8749	0.199	0.8309	1.9009	136	136	272	71664	68151	48027	50601	238443	0.3	0.27	0.2	0.23	0.43	0.8697	0.31	0.7608	1.9026	0	385681	401090	250868	246928	0	1284567	0.31	0.34	0.18	0.18	0.35	0.8828	0.1784	0.8477	1.9105	10	12	22	306	365	423	520	1614	0.19	0.23	0.26	0.32	0.58	0.8922	0.2279	0.8002	1.9658	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22020	26181	12905	15321	18165	21627	16086	20645	12359	16464	24501	33358	18035	16985	14780	22007	13832	14731	18014	18562	18375	12644	14381	22869	21276	14006	10486	20707	13374	19399	18727	15387	15085	16868	20497	19370	13774	8581	15201	13270	15934	9016	36202	12128	13477	16917	9397	20411	11558	14140	15721	12818	13540	11788	13599	15780	6228	10592	13065	10605	25160	9043	13585	16827
GCF_021901495.1	NC_060880	NC_060880.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 4; iyNeoVirg1.1; whole genome shotgun sequence.	12578022	12534482	8226670	8234487	400	41574061	0.3	0.3	0.2	0.2	0.4	0.9528	0.0022	0.9978	1.9685	1117	1140	2257	9848647	9955081	6364346	6365855	300	32534229	0.31	0.3	0.19	0.2	0.39	0.9229	0.0736	0.9316	1.9549	232166	955	951	1906	996509	797958	760479	807489	3362435	0.3	0.24	0.22	0.24	0.46	0.8819	0.2673	0.7804	1.9587	47	5132643	5379609	3299388	3233478	200	17045318	0.31	0.35	0.17	0.17	0.34	0.8745	0.2073	0.8243	1.8979	128	124	252	84927	79671	53888	56456	274942	0.3	0.27	0.21	0.22	0.43	0.8723	0.2591	0.7928	1.931	26	476389	487675	300794	301560	100	1566518	0.31	0.33	0.18	0.18	0.36	0.884	0.1764	0.8494	1.9162	6	16	22	293	364	435	552	1644	0.18	0.22	0.26	0.33	0.59	0.8916	0.2428	0.7892	1.9546	24	40	64	13698	13386	14255	16779	58118	0.23	0.21	0.26	0.29	0	0.56	0.9028	0.0997	0.9068	1.9848	22931	26823	13235	16353	18995	22939	17296	21476	13834	17265	25109	33805	19339	18001	15614	23036	14847	14831	19473	19608	20157	14005	15966	23439	22416	15084	11314	21462	14263	21513	19774	16188	16246	17961	21418	20593	15179	9626	16561	14764	17742	10075	37133	13314	14781	18141	10230	22316	12462	14740	17281	13814	14361	13002	14502	17304	6541	11560	14539	10791	26727	9596	14761	18491
GCF_021901495.1	NC_060881	NC_060881.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 5; iyNeoVirg1.1; whole genome shotgun sequence.	10874824	10874598	7052699	7039828	600	35842549	0.3	0.3	0.2	0.2	0.39	0.9534	0.0009	0.9991	1.9668	1051	1026	2077	8348795	8388728	5425553	5432960	300	27596336	0.31	0.3	0.19	0.2	0.39	0.9237	0.0762	0.9296	1.9587	57184	900	859	1759	946240	759934	745814	794646	3246634	0.29	0.24	0.22	0.24	0.47	0.8833	0.2614	0.784	1.962	4	4322616	4523436	2762399	2705761	200	14314412	0.31	0.35	0.17	0.17	0.34	0.8727	0.2216	0.8136	1.9008	127	117	244	75836	70699	47782	50665	244982	0.3	0.27	0.2	0.23	0.43	0.8722	0.2781	0.7834	1.9216	0	386434	397172	249902	250790	0	1284298	0.31	0.34	0.18	0.18	0.35	0.881	0.187	0.841	1.9112	25	33	58	792	982	1130	1381	4285	0.19	0.23	0.26	0.32	0.58	0.8904	0.2327	0.7963	1.9634	2	2	4	102	95	130	149	476	0.21	0.2	0.27	0.31	0	0.59	0.8899	0.1025	0.904	1.9752	21627	26178	12444	15456	18249	23291	16844	19575	13371	16573	23169	31939	18353	18087	14382	22668	14451	14616	19261	18709	19992	13772	15730	22159	23089	14597	10701	20629	12879	21224	19039	15725	16206	16801	20174	21041	14788	9491	16520	14945	17116	10301	34246	13594	14164	17222	10220	20768	11444	13959	17647	14444	12688	12446	14785	16175	5737	12231	14466	11056	24602	8668	13611	18194
GCF_021901495.1	NC_060882	NC_060882.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 6; iyNeoVirg1.1; whole genome shotgun sequence.	9066211	9061882	6262705	6265532	400	30656730	0.3	0.3	0.2	0.2	0.41	0.9555	0.0005	0.9995	1.9758	811	760	1571	7193073	7269438	5048221	5037436	200	24548368	0.3	0.3	0.2	0.2	0.4	0.9238	0.0802	0.926	1.9595	20702	704	664	1368	731023	578137	554096	591578	2454834	0.29	0.24	0.22	0.24	0.46	0.8815	0.2707	0.7777	1.9568	6	3308020	3492346	2351892	2297219	0	11449477	0.31	0.35	0.17	0.17	0.35	0.8728	0.2147	0.8183	1.9021	86	74	160	53802	49524	33468	36094	172888	0.29	0.26	0.21	0.24	0.45	0.869	0.2981	0.7703	1.9298	16	376684	380312	265791	266501	0	1289288	0.31	0.34	0.18	0.18	0.36	0.881	0.1768	0.8497	1.9116	13	13	26	317	416	532	635	1900	0.17	0.22	0.28	0.33	0.62	0.8811	0.2344	0.7952	1.9433	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16249	20291	9417	11985	13317	17047	12603	15621	10116	12526	18773	25251	14025	13339	11402	16879	10748	10692	14082	14534	14226	10288	11372	17278	16537	11206	8043	15399	10202	15836	14062	11654	11612	12658	15485	15300	11221	7205	12218	10636	12601	7261	27978	10064	10426	13088	7587	16290	8925	10424	12692	10248	10439	9569	10774	12651	4824	8699	10775	8117	19274	6996	10856	13542
GCF_021901495.1	NC_060883	NC_060883.1	Neodiprion virginianus isolate iyNeoVirg1 chromosome 7; iyNeoVirg1.1; whole genome shotgun sequence.	7686720	7679546	4939093	4929693	1200	25236252	0.3	0.3	0.2	0.2	0.39	0.9506	0.0014	0.9986	1.9655	628	607	1235	5655602	5665175	3581426	3610875	400	18513478	0.31	0.3	0.19	0.2	0.4	0.9215	0.0877	0.9211	1.958	55681	543	511	1054	537797	421449	417422	457666	1834334	0.29	0.24	0.22	0.25	0.47	0.8822	0.2751	0.7753	1.9604	0	2678877	2773920	1661484	1641351	300	8755932	0.31	0.35	0.18	0.17	0.35	0.8762	0.2155	0.8186	1.9079	74	82	156	41657	37501	24792	26776	130726	0.29	0.27	0.2	0.23	0.43	0.866	0.326	0.7522	1.9098	0	431124	444935	276749	277766	0	1430574	0.31	0.33	0.18	0.18	0.36	0.8822	0.1899	0.8424	1.9131	2	5	7	103	115	133	166	517	0.2	0.22	0.26	0.32	0.58	0.8932	0.2321	0.7992	1.9669	8	0	8	199	184	264	305	952	0.21	0.19	0.28	0.32	0	0.6	0.8762	0.1112	0.8952	1.9696	11651	15474	6800	8412	9668	14165	9085	11025	7386	9356	12727	19315	10039	11053	8126	12856	7598	8347	11302	10459	10844	8088	8701	13344	12230	8167	5505	11178	7006	12569	11248	8698	9260	9178	11351	12501	7772	5211	9256	7969	9353	6101	19910	7792	7527	9697	6134	12202	5969	7325	10557	8471	6796	6710	8801	8948	3035	7357	8707	6440	13656	4619	7418	11007