GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_003676215.2	NC_040877	NC_040877.1	Rhopalosiphum maidis isolate BTI-1 chromosome 1; ASM367621v3; whole genome shotgun sequence.	33966379	34020960	13114100	13114576	8400	94224415	0.36	0.36	0.14	0.14	0.28	0.9383	0.0008	0.9992	1.8532	1812	1885	3697	18398666	18845555	7079526	7212863	400	51537010	0.35	0.36	0.14	0.15	0.29	0.898	0.0848	0.9214	1.8492	28960	1647	1712	3359	1793815	1483680	970193	1062896	5310584	0.34	0.29	0.17	0.2	0.37	0.8647	0.2844	0.7683	1.9033	0	11317967	11863572	4079122	4119309	400	31380370	0.37	0.43	0.09	0.11	0.21	0.8104	0.2778	0.7805	1.6973	54	56	110	26922	26028	13379	13776	80105	0.34	0.32	0.17	0.17	0.34	0.8597	0.2734	0.7768	1.8813	0	242033	243467	90293	88516	0	664309	0.35	0.42	0.11	0.12	0.23	0.8307	0.2417	0.8008	1.744	38	32	70	1012	1197	1317	1677	5203	0.2	0.23	0.25	0.32	0.57	0.8968	0.2446	0.7921	1.9654	4	7	11	317	307	337	348	1309	0.24	0.23	0.26	0.27	0.52	0.8853	0.0383	0.9629	1.9974	45192	37257	26841	29213	23901	19413	23228	53570	15031	26593	61935	59808	35677	18355	26741	36558	23932	24560	25434	47150	22810	22020	13376	43845	24764	19109	21073	38095	39823	24977	27187	22523	18732	43332	38930	25654	18430	8243	25785	15778	16898	9213	89997	15201	17453	32904	8183	33071	28677	29524	16797	12539	47833	15515	11827	27790	14196	11595	14756	15951	50094	26536	24875	16328
GCF_003676215.2	NC_040878	NC_040878.1	Rhopalosiphum maidis isolate BTI-1 chromosome 2; ASM367621v3; whole genome shotgun sequence.	33699307	33709613	12933177	12951306	5500	93298903	0.36	0.36	0.14	0.14	0.28	0.9392	0.0009	0.9991	1.8519	1985	1970	3955	19341615	19764771	7464168	7598793	500	54169847	0.35	0.35	0.14	0.15	0.29	0.8987	0.0888	0.9181	1.8553	5729	1796	1766	3562	1896910	1556901	1050361	1150430	5654602	0.34	0.28	0.18	0.2	0.38	0.8656	0.2842	0.768	1.9081	13	11460627	11979582	4131055	4152671	300	31724235	0.37	0.43	0.1	0.11	0.21	0.812	0.2711	0.7848	1.7023	72	72	144	29541	28347	15149	14875	87912	0.34	0.31	0.17	0.17	0.35	0.8583	0.254	0.7891	1.8853	0	219166	221266	86502	85415	0	612349	0.36	0.4	0.12	0.12	0.24	0.841	0.1932	0.8393	1.768	30	51	81	1135	1329	1623	1996	6083	0.19	0.22	0.27	0.33	0.59	0.8802	0.265	0.774	1.9527	2	5	7	200	200	214	226	840	0.24	0.24	0.25	0.27	0.52	0.887	0.052	0.9499	1.9969	47237	41427	28500	30725	25944	21081	25324	54876	16656	28097	63307	63802	37464	20382	27839	39820	25136	27317	27722	48290	25021	24600	14342	45727	26621	21292	22176	40639	40906	27420	28953	23286	20775	44156	40751	28175	20197	9271	28283	18451	18300	9975	95221	16918	18084	35229	8878	35160	29485	30425	19015	13846	49208	16351	13392	30043	14946	12692	16714	17217	52335	27804	26058	17733
GCF_003676215.2	NC_040879	NC_040879.1	Rhopalosiphum maidis isolate BTI-1 chromosome 3; ASM367621v3; whole genome shotgun sequence.	27803150	27804686	10631245	10620277	28500	76887858	0.36	0.36	0.14	0.14	0.28	0.9359	0.0005	0.9995	1.8505	1433	1346	2779	11743063	11959278	4538082	4579830	2000	32822253	0.35	0.35	0.14	0.15	0.29	0.8958	0.0931	0.9146	1.856	17454	1218	1155	2373	1188716	966012	642305	698523	3495556	0.35	0.28	0.17	0.2	0.37	0.8643	0.285	0.7674	1.9006	6	7729810	8029466	2795961	2804516	900	21360653	0.37	0.42	0.1	0.11	0.21	0.8183	0.2505	0.7993	1.7105	134	112	246	63042	58183	28765	30389	180379	0.35	0.31	0.16	0.18	0.34	0.8679	0.2301	0.8052	1.8951	2	440312	472649	163426	154042	700	1231129	0.35	0.41	0.12	0.12	0.24	0.8457	0.2061	0.8239	1.7805	23	20	43	520	693	855	1054	3122	0.17	0.22	0.27	0.34	0.61	0.8843	0.2533	0.7777	1.9482	6	7	13	374	353	404	419	1550	0.24	0.23	0.26	0.27	0.53	0.886	0.047	0.9544	1.9966	29942	24266	17381	18788	15730	13090	14084	35674	9589	16300	42188	38646	23218	12953	17123	25678	15242	15966	16785	31247	14396	14162	8570	28306	16754	12348	14034	24333	26091	16718	17736	14560	11809	30075	26299	17787	12862	5332	17026	10761	11372	6873	60031	10328	11424	20530	5546	20862	18551	19454	11669	9149	30964	9297	7768	17343	8620	8399	10173	10827	32623	17290	15883	11701
GCF_003676215.2	NC_040880	NC_040880.1	Rhopalosiphum maidis isolate BTI-1 chromosome 4; ASM367621v3; whole genome shotgun sequence.	20377691	20363088	7773800	7773334	4500	56292413	0.36	0.36	0.14	0.14	0.28	0.9364	0.0004	0.9996	1.8502	1222	1231	2453	11832129	12058144	4557443	4621095	200	33069011	0.35	0.36	0.14	0.15	0.29	0.8986	0.0837	0.9223	1.8522	106212	1108	1101	2209	1217532	999644	666849	725225	3609250	0.34	0.28	0.17	0.2	0.37	0.8652	0.2852	0.7675	1.9045	37	6837870	7142075	2445803	2453718	100	18879566	0.37	0.43	0.1	0.11	0.21	0.8115	0.2718	0.7844	1.7002	33	34	67	15045	14363	7322	7270	44000	0.34	0.31	0.18	0.17	0.35	0.8507	0.266	0.7865	1.876	0	94863	97943	34744	35485	0	263035	0.36	0.4	0.12	0.12	0.24	0.8384	0.1832	0.8455	1.7677	25	25	50	659	825	988	1158	3630	0.18	0.23	0.27	0.32	0.59	0.885	0.2056	0.82	1.9613	5	7	12	340	330	371	387	1428	0.24	0.23	0.26	0.27	0.53	0.8875	0.042	0.9591	1.9968	30041	25074	18169	20136	16443	13080	15998	35899	10173	17397	41447	40613	24553	12658	18259	25053	16329	16823	17430	31466	15292	15316	9002	29751	16638	13357	13621	25796	26649	17798	18470	14908	12799	29261	27375	17734	12789	5926	18225	11436	11535	6520	60642	10585	11587	22508	5713	22572	18647	19647	11614	8622	31716	10771	7933	18964	9611	8215	10267	10827	33813	18209	16828	11466