GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020882245.1	NC_083597	NC_083597.1	Rhopalosiphum padi isolate XX-2018 chromosome 1; ASM2088224v1; whole genome shotgun sequence.	33652681	33649006	12873877	12945524	6500	93127588	0.36	0.36	0.14	0.14	0.28	0.9379	0.0028	0.9972	1.8517	2021	1972	3993	20307910	20791067	7844001	7975820	500	56919298	0.36	0.36	0.14	0.15	0.29	0.8985	0.0815	0.9243	1.8494	17201	1756	1702	3458	1879577	1552406	1021048	1113631	5566662	0.34	0.29	0.17	0.2	0.37	0.8647	0.2826	0.7692	1.9041	1011	11765797	12315540	4255427	4302798	32639562	0.37	0.43	0.1	0.11	0.21	0.811	0.2755	0.7821	1.6988	164	141	305	108403	102662	51789	50925	313779	0.35	0.31	0.17	0.17	0.34	0.8627	0.245	0.7962	1.8857	0	682405	696075	261343	258715	500	1899038	0.36	0.41	0.1	0.12	0.22	0.8308	0.2584	0.7965	1.7376	33	38	71	1013	1218	1329	1703	5263	0.19	0.23	0.25	0.32	0.57	0.8979	0.2515	0.7865	1.9643	11	9	20	576	549	639	655	2419	0.24	0.23	0.26	0.27	0.53	0.887	0.0402	0.961	1.9947	47522	39199	28311	30338	25167	20485	24135	56475	15910	27769	64738	62587	37475	19303	27679	38730	25032	25793	26755	49176	23899	22850	13978	45888	26191	20137	22121	39784	41442	26114	28520	23587	19742	45970	40935	26798	19593	8900	26938	16552	17593	9875	93775	15887	18419	34400	8594	34304	29898	30841	17680	13198	49971	16248	12518	29454	14724	12390	15723	16611	52676	27713	25692	17101
GCF_020882245.1	NC_083598	NC_083598.1	Rhopalosiphum padi isolate XX-2018 chromosome 2; ASM2088224v1; whole genome shotgun sequence.	33535185	33524002	12929698	12928850	3500	92921235	0.36	0.36	0.14	0.14	0.28	0.9388	0.0002	0.9998	1.8531	2153	2134	4287	21055890	21515737	8142886	8278996	0	58993509	0.35	0.35	0.14	0.15	0.29	0.8988	0.0878	0.9191	1.8555	23581	1854	1844	3698	1994435	1642652	1112950	1212735	5962772	0.34	0.28	0.18	0.2	0.38	0.8658	0.281	0.7703	1.909	1244	11728977	12249917	4231632	4259791	32470317	0.37	0.43	0.1	0.11	0.21	0.8125	0.2691	0.7863	1.7042	182	169	351	122856	121913	57138	58383	360290	0.34	0.32	0.16	0.17	0.34	0.8584	0.2387	0.8012	1.879	0	626932	640471	244282	246355	0	1758040	0.36	0.41	0.11	0.12	0.23	0.8324	0.2633	0.7942	1.7422	48	33	81	1137	1319	1621	1999	6076	0.19	0.22	0.27	0.33	0.59	0.8804	0.2638	0.7748	1.9522	6	6	12	350	329	370	385	1434	0.24	0.23	0.26	0.27	0.53	0.887	0.0508	0.9509	1.9972	49807	43508	30457	31957	27473	22430	26670	58253	17570	29475	67006	66613	39091	21523	28998	41978	26225	29086	29528	51020	26431	25740	15212	47913	27977	22717	22990	42724	43101	28886	30978	24794	22261	46802	43103	29763	21685	9766	30043	19897	19042	10697	99306	17756	19088	37287	9284	36413	30955	32540	19928	14862	51622	17155	13830	32153	15502	13755	17772	18794	55098	28993	27459	18855
GCF_020882245.1	NC_083599	NC_083599.1	Rhopalosiphum padi isolate XX-2018 chromosome 3; ASM2088224v1; whole genome shotgun sequence.	29703348	29725748	11542834	11576964	13000	82561894	0.36	0.36	0.14	0.14	0.28	0.9343	0.0019	0.9981	1.8555	1931	1923	3854	13646532	13833710	5342718	5393084	2000	38218044	0.36	0.34	0.15	0.15	0.3	0.8964	0.1027	0.9065	1.8629	15921	1545	1605	3150	1639882	1328154	860119	935542	4763697	0.35	0.28	0.17	0.19	0.37	0.8658	0.2839	0.7682	1.8998	7	7879042	8204669	2866992	2877809	21828512	0.37	0.42	0.1	0.11	0.21	0.8149	0.26	0.7924	1.7077	252	178	430	152061	146410	66243	69837	434551	0.35	0.32	0.16	0.17	0.33	0.8672	0.2284	0.8062	1.8825	151	1004318	1033098	371293	353730	1500	2763939	0.36	0.41	0.12	0.11	0.23	0.8389	0.2159	0.8212	1.7589	26	23	49	591	798	969	1193	3551	0.17	0.22	0.27	0.34	0.61	0.884	0.2586	0.7733	1.9499	12	12	24	2286	2186	3143	3562	11177	0.23	0.22	0.27	0.28	0.55	0.8902	0.0467	0.955	1.9856	40876	33063	24213	25687	21655	18331	19656	49321	12802	21933	60605	54275	31927	16779	23516	34654	21275	21111	22314	44334	19007	18982	11477	40013	21751	16015	19560	32955	35768	21658	23411	20216	15382	43216	35135	24407	16737	7516	22105	13843	14374	9020	86975	12984	14835	28123	7732	28103	25060	26511	15360	11912	44940	13426	10637	23913	11379	10488	13251	14529	44362	22452	19408	15356
GCF_020882245.1	NC_083600	NC_083600.1	Rhopalosiphum padi isolate XX-2018 chromosome 4; ASM2088224v1; whole genome shotgun sequence.	20056798	20033959	7654690	7653196	2000	55400643	0.36	0.36	0.14	0.14	0.28	0.9367	0.0007	0.9993	1.8504	1309	1333	2642	12788223	13066492	4936543	5002255	1000	35794513	0.35	0.36	0.14	0.15	0.29	0.8988	0.0805	0.9251	1.8508	346740	1152	1145	2297	1271758	1046294	695917	755022	3768991	0.34	0.28	0.17	0.2	0.37	0.8653	0.2833	0.7688	1.9047	29	6828475	7150822	2459985	2464379	18903661	0.37	0.43	0.1	0.11	0.21	0.8114	0.2724	0.7841	1.7014	103	105	208	74046	71364	34660	34950	215020	0.35	0.31	0.17	0.18	0.34	0.8602	0.2401	0.7999	1.8856	0	289466	297524	103826	104915	0	795731	0.36	0.41	0.11	0.12	0.23	0.8304	0.2642	0.7961	1.7423	20	23	43	587	718	843	984	3132	0.19	0.23	0.27	0.31	0.58	0.8864	0.1929	0.8304	1.9666	3	8	11	318	300	341	352	1311	0.24	0.23	0.26	0.27	0.53	0.8864	0.0448	0.9567	1.997	31900	26692	19014	20598	17197	13583	16505	37874	10590	18055	43773	41561	24745	13460	18877	26035	16978	17610	18166	32936	16557	15945	9316	30801	17287	13736	14751	26852	28275	18294	19152	15655	13172	31172	28142	18416	13366	6326	18722	11850	11662	6787	63359	10946	12037	23436	5940	22838	19512	20642	12171	9099	33471	11203	8274	20150	9861	8613	10883	11339	35751	19504	17283	12401