GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_030247195.1	NC_080670	NC_080670.1	Topomyia yanbarensis strain Yona2022 chromosome 1; ASM3024719v1; whole genome shotgun sequence.	65859273	66017922	42808000	42821350	280000	217786545	0.3	0.3	0.2	0.2	0.39	0.95	0.0014	0.9986	1.9665	2105	2092	4197	39297379	39163561	25587027	25680391	112500	129840858	0.3	0.28	0.21	0.22	0.43	0.9236	0.1049	0.9053	1.9732	549103	1785	1732	3517	1733790	1422994	1448346	1533752	6138882	0.28	0.23	0.23	0.25	0.48	0.8876	0.2574	0.7886	1.965	2052	23363998	23544037	15061207	15000450	75000	77044692	0.29	0.35	0.17	0.18	0.36	0.8635	0.2809	0.7773	1.8974	0	251	256	507	248330	231707	164253	169200	813490	0.31	0.27	0.2	0.22	0.42	0.8858	0.2261	0.8114	1.9536	5	440218	466178	263763	266764	500	1437423	0.31	0.37	0.16	0.16	0.32	0.8415	0.3094	0.7529	1.8615	50	50	100	1384	1762	1887	2332	7365	0.19	0.24	0.26	0.32	0.57	0.8863	0.2511	0.7846	1.964	5	9	14	1725	1443	1373	1542	6083	0.3	0.21	0.24	0.25	0.49	0.8852	0.1861	0.8394	1.9885	41410	49824	25208	27123	37437	40768	33645	37932	28910	32221	40584	63247	32427	34172	29204	46791	22341	35856	39280	33301	44352	30821	22536	50069	43622	32351	24591	35719	23250	41552	42827	23693	25433	23609	34927	34515	29014	17436	30174	28897	32576	21756	58799	23880	27210	34142	17351	27526	24418	28296	36369	26940	19878	19256	20304	33537	9568	31299	35175	24229	46040	13315	21356	38158
GCF_030247195.1	NC_080671	NC_080671.1	Topomyia yanbarensis strain Yona2022 chromosome 2; ASM3024719v1; whole genome shotgun sequence.	143875909	143961226	91062029	91012933	311000	470223097	0.31	0.31	0.19	0.19	0.39	0.9402	0.0006	0.9994	1.9628	3724	3627	7351	87261469	87053605	55386486	55369487	136000	285207047	0.3	0.28	0.2	0.22	0.42	0.9224	0.1033	0.9066	1.9695	899727	3060	3079	6139	3328350	2724177	2657928	2797766	11508221	0.29	0.24	0.22	0.24	0.47	0.888	0.2564	0.7894	1.963	21	51413182	51775602	32480257	32279743	96000	168044784	0.3	0.35	0.17	0.18	0.35	0.8618	0.2623	0.7894	1.894	0	367	381	748	313229	288867	202679	210258	1015033	0.31	0.28	0.2	0.21	0.41	0.8851	0.2262	0.811	1.9497	3	699846	719412	431954	431012	1500	2283724	0.31	0.37	0.15	0.16	0.32	0.837	0.3202	0.7456	1.8545	75	68	143	2057	2446	2684	3405	10592	0.19	0.23	0.25	0.32	0.57	0.8922	0.2262	0.8038	1.9678	163	15	178	6213	6122	6371	7207	25913	0.23	0.24	0.25	0.28	0.53	0.8883	0.1004	0.9069	1.9936	79399	93264	49409	52528	71483	76520	61549	75334	49587	60828	82703	121474	62683	61199	53914	87518	43400	66031	74169	66097	77518	53169	43010	94095	79110	57291	47929	70291	46803	73098	77976	48207	48149	48955	68634	64099	54172	31773	56120	50563	58129	38864	118492	41631	51325	66408	29699	54584	45764	55325	63105	47731	41728	36635	38547	65288	18171	50363	58163	44621	90299	25605	39475	69112
GCF_030247195.1	NC_080672	NC_080672.1	Topomyia yanbarensis strain Yona2022 chromosome 3; ASM3024719v1; whole genome shotgun sequence.	131568007	131470247	82699350	82630290	216500	428584394	0.31	0.31	0.19	0.19	0.39	0.9403	0.0008	0.9992	1.9619	3339	3450	6789	82507053	82416700	52027649	51929191	92500	268973093	0.3	0.28	0.2	0.21	0.41	0.9237	0.1008	0.9089	1.9682	649849	2894	2983	5877	3100414	2522593	2467415	2590503	10680925	0.29	0.24	0.22	0.24	0.47	0.8868	0.2619	0.7849	1.9626	3889	49861620	50215196	31262440	31009395	70500	162419151	0.3	0.35	0.17	0.18	0.35	0.8629	0.2606	0.7908	1.8939	1523	328	326	654	257325	232881	166362	173403	829971	0.31	0.27	0.2	0.21	0.42	0.8844	0.23	0.8082	1.9504	0	618035	630790	369721	367879	0	1986425	0.31	0.37	0.16	0.16	0.32	0.8388	0.3093	0.7537	1.8602	52	62	114	1608	1929	2160	2677	8374	0.19	0.23	0.26	0.32	0.57	0.8945	0.2212	0.8081	1.9656	8	10	18	819	572	664	681	2736	0.3	0.21	0.24	0.25	0.49	0.8802	0.1902	0.8369	1.988	72936	85341	44466	50304	66136	69529	57151	70055	47493	55469	76641	114338	58259	56911	50584	81412	40998	59443	68350	61059	71095	50266	38891	88540	74361	53686	43565	64221	43567	69400	72047	43795	43447	44986	65063	59088	49858	29138	52216	46269	54699	35755	111780	38779	47399	61369	27392	50431	43839	50799	59353	43734	37794	34374	35282	61104	17469	46670	54566	40608	84332	24077	37593	63940