GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_028554725.1	NC_071667	NC_071667.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome 2; idZeuCucr1.2; whole genome shotgun sequence.	28350913	28269700	15516951	15553961	0	87691525	0.32	0.32	0.18	0.18	0.35	0.9428	0.0026	0.9974	1.9379	1774	1783	3557	18255698	18286115	10040482	9985696	56567991	0.33	0.31	0.18	0.19	0.36	0.913	0.1022	0.9066	1.9353	109933	1553	1534	3087	1615180	1319463	1172806	1217470	5324919	0.3	0.26	0.21	0.23	0.44	0.8835	0.2583	0.7872	1.9548	0	8590517	8935341	4646507	4541879	26714244	0.34	0.38	0.14	0.14	0	0.28	0.8376	0.2774	0.7774	1.8171	162	166	328	211032	196511	106155	110947	624645	0.34	0.31	0.17	0.18	0	0.35	0.876	0.2168	0.8179	1.9095	504619	516092	270159	269009	1559879	0.35	0.39	0.13	0.14	0	0.26	0.8243	0.2967	0.7665	1.7882	39	39	78	1119	1310	1460	1945	5834	0.19	0.22	0.25	0.33	0	0.58	0.8756	0.2686	0.7727	1.9599	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	43619	38572	21746	23751	39302	28953	28420	40808	16286	27923	53526	49168	29837	24835	25011	36256	18484	32612	27131	34209	26604	26141	16685	39492	30519	21638	19432	40274	30151	21361	27718	20475	18725	35012	42767	22908	26977	11813	25136	23956	27614	25925	60587	25095	26051	26973	8560	22204	22437	30347	24494	27773	28510	13533	13485	31877	9290	15222	21041	24135	53996	17718	21671	23562
GCF_028554725.1	NC_071668	NC_071668.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome 3; idZeuCucr1.2; whole genome shotgun sequence.	25496124	25508186	13916638	13955212	200	78876360	0.32	0.32	0.18	0.18	0.35	0.9423	0.0016	0.9984	1.937	1290	1506	2796	14301961	14339607	7842732	7825892	44310192	0.32	0.31	0.18	0.19	0.37	0.9124	0.1056	0.9041	1.9371	121874	1114	1183	2297	1224783	1015128	893105	936010	4069026	0.3	0.26	0.21	0.23	0.44	0.8839	0.2556	0.7891	1.9544	0	6747020	6953288	3629454	3560009	20889771	0.34	0.38	0.14	0.14	0	0.28	0.8359	0.2838	0.7734	1.8136	136	173	309	204548	191860	107567	112009	615984	0.33	0.3	0.17	0.19	0	0.36	0.8788	0.2163	0.8173	1.9174	661944	682161	354222	359534	2057861	0.34	0.4	0.13	0.14	0	0.26	0.8212	0.2948	0.7676	1.7851	39	46	85	1084	1395	1700	2011	6190	0.18	0.23	0.27	0.32	0	0.6	0.8805	0.2363	0.7984	1.9473	0	67	67	1740	1739	2143	2351	7973	0.22	0.22	0.27	0.29	0	0.56	0.9044	0.05	0.9521	1.9873	33195	29458	17273	17989	29683	22926	21438	30464	12060	22307	40997	37553	22613	18978	18906	26589	13652	26024	20354	26299	20591	19885	12956	30898	22285	16290	15144	31558	23262	15243	21507	15778	15289	27462	32328	17344	21287	8624	19320	18306	20337	20318	45939	19263	20812	21105	6370	16498	17645	23381	18490	22106	22169	10082	10174	23999	6741	11844	15994	19065	40436	12936	15976	17381
GCF_028554725.1	NC_071669	NC_071669.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome 4; idZeuCucr1.2; whole genome shotgun sequence.	24529548	24429753	13255840	13298493	0	75513634	0.32	0.32	0.18	0.18	0.35	0.9445	0.0036	0.9964	1.9355	1519	1460	2979	14461049	14401345	7887569	7818017	44567980	0.32	0.3	0.18	0.19	0.37	0.9121	0.1117	0.8988	1.9392	360750	1333	1251	2584	1288895	1036371	961215	985455	4271936	0.3	0.26	0.21	0.23	0.44	0.8808	0.2682	0.7807	1.9525	29	6300454	6509292	3352150	3258454	19420350	0.34	0.38	0.14	0.14	0	0.28	0.8371	0.2803	0.776	1.8156	147	151	298	200966	189086	105772	107329	603153	0.34	0.3	0.17	0.19	0	0.36	0.8786	0.2234	0.8135	1.911	592742	610676	314228	316034	1833680	0.34	0.4	0.13	0.14	0	0.27	0.8232	0.3002	0.7652	1.7914	20	22	42	618	744	806	987	3155	0.2	0.24	0.26	0.31	0	0.57	0.8928	0.1931	0.8298	1.9756	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33945	32046	16850	18725	31930	24044	24176	30209	13316	21774	42617	39015	23697	20235	20176	29844	14240	26683	21616	24897	21252	20938	13422	31789	25822	17438	15278	32394	23960	16943	21987	15831	15589	27050	33957	18009	22334	10263	20688	20951	23111	21331	47318	20863	20831	21563	6337	18176	17457	24141	20393	23523	21521	10858	11129	27585	6842	11859	17775	19919	43867	13334	16825	18284
GCF_028554725.1	NC_071670	NC_071670.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome 5; idZeuCucr1.2; whole genome shotgun sequence.	24467428	24432947	13005006	12938102	0	74843483	0.33	0.33	0.17	0.17	0.35	0.9441	0.0033	0.9967	1.931	1469	1513	2982	16065647	16181433	8666812	8622209	49536101	0.32	0.31	0.18	0.19	0.37	0.9124	0.1094	0.901	1.9377	183633	1276	1270	2546	1329383	1080931	995748	1028789	4434851	0.3	0.26	0.21	0.23	0.44	0.8836	0.2635	0.7842	1.9536	0	6350523	6599784	3322809	3240257	19513373	0.33	0.38	0.14	0.14	0	0.28	0.8368	0.2867	0.7705	1.8171	125	143	268	170100	160068	87297	90789	508254	0.34	0.31	0.17	0.19	0	0.36	0.8775	0.2133	0.8203	1.913	748436	794671	401384	409040	2353531	0.33	0.39	0.13	0.14	0	0.28	0.8363	0.2732	0.7821	1.8094	38	43	81	1146	1404	1495	1878	5923	0.2	0.24	0.25	0.32	0	0.57	0.893	0.2392	0.7948	1.9705	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	34835	31465	17470	19770	32710	25664	23565	31809	13360	23256	43866	41076	24152	21533	21201	29753	14761	28318	21635	27407	23465	22007	14510	32922	25367	18268	16367	33105	25041	16809	22598	16950	15725	28412	35969	19925	24241	9958	20619	20084	24396	23725	48838	22582	22814	21683	6915	18267	18892	25029	20675	25744	22733	11303	11109	27145	7109	12718	18336	20460	44521	13434	17106	19376
GCF_028554725.1	NC_071671	NC_071671.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome 6; idZeuCucr1.2; whole genome shotgun sequence.	23811772	23931097	12956993	12924554	0	73624416	0.32	0.33	0.18	0.18	0.35	0.9445	0.0038	0.9963	1.9354	1556	1680	3236	15703072	15716938	8541889	8505358	48467257	0.32	0.31	0.18	0.19	0.37	0.912	0.1065	0.903	1.9371	181745	1340	1404	2744	1387105	1144007	1017316	1061639	4610067	0.3	0.26	0.21	0.23	0.44	0.8827	0.26	0.786	1.9547	0	6873706	7100140	3660446	3576377	21210669	0.34	0.39	0.14	0.14	0	0.28	0.8361	0.2832	0.7735	1.8121	152	148	300	197997	186675	101343	104369	590384	0.34	0.3	0.17	0.18	0	0.35	0.8744	0.2214	0.8141	1.908	580887	603396	314305	314510	1813098	0.34	0.4	0.12	0.14	0	0.26	0.8149	0.3166	0.7515	1.7829	56	83	139	1939	2313	2715	3313	10280	0.19	0.22	0.26	0.32	0	0.59	0.8882	0.2294	0.8008	1.9607	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37164	33214	18253	19868	33091	25866	24206	34378	13939	24827	46371	42183	24851	21279	21432	30984	15546	28921	24265	29943	23368	23427	15291	34720	26177	19044	16476	35007	26933	17893	24156	17682	16507	30443	36457	19459	23588	9898	22326	21471	24468	23589	52551	23059	23238	23095	6985	18924	19552	25722	21111	24971	24307	11117	11424	27052	7817	13256	18290	21964	45570	15072	18829	19996
GCF_028554725.1	NC_071672	NC_071672.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome X; idZeuCucr1.2; whole genome shotgun sequence.	11385469	9535593	6901396	6348835	100	34171393	0.33	0.28	0.2	0.19	0.39	0.8012	0.1301	0.8787	1.9594	146	228	374	1259019	1250629	708362	708372	3926382	0.31	0.31	0.18	0.2	0.39	0.9071	0.1264	0.8865	1.9495	3248	83	98	181	140310	108949	90093	90985	430337	0.33	0.26	0.2	0.21	0.41	0.8815	0.2749	0.7746	1.9426	0	560495	586512	313837	308311	1769155	0.34	0.38	0.14	0.15	0	0.29	0.8453	0.2374	0.8078	1.8288	30	28	58	67384	66304	37010	38272	208970	0.34	0.3	0.17	0.19	0	0.36	0.8818	0.2091	0.8262	1.9145	28132	28817	13315	12952	83216	0.35	0.41	0.12	0.12	0	0.24	0.8018	0.3236	0.7446	1.7471	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	31	103	134	40918	42251	27087	33860	144116	0.27	0.29	0.19	0.24	0	0.44	0.8948	0.1628	0.8525	1.9817	3953	3104	2158	2043	3071	1835	2045	3380	1305	1931	4995	3686	2593	2004	2192	3498	1429	2424	1730	2874	2284	1676	1103	2796	2843	1577	1922	3166	2460	1589	2159	1742	1402	3608	3902	1613	2110	743	2122	1471	2280	1554	5609	1598	1946	2290	697	1862	1789	2739	1778	1793	3051	1060	1163	2477	989	1040	1414	1533	4986	1762	1648	1572
GCF_028554725.1	NC_071673	NC_071673.1	Zeugodacus cucurbitae isolate PBARC_wt_2022May chromosome Y; idZeuCucr1.2; whole genome shotgun sequence.	3296938	3249409	1831883	1823347	0	10201577	0.32	0.32	0.18	0.18	0.36	0.9016	0.0096	0.9905	1.9412	44	92	136	1042274	1049454	604035	607914	3303677	0.32	0.3	0.18	0.2	0.38	0.9042	0.1543	0.8626	1.944	5964	43	57	100	38621	31537	22335	24312	116805	0.36	0.26	0.18	0.21	0.39	0.8775	0.321	0.7477	1.9086	0	552647	565725	324785	322587	1765744	0.34	0.39	0.12	0.15	0	0.27	0.8187	0.2984	0.7643	1.7895	3	9	12	4360	3819	2044	2361	12584	0.36	0.3	0.15	0.19	0	0.34	0.8738	0.2632	0.778	1.9038	4692	4253	2193	2165	13303	0.36	0.41	0.12	0.11	0	0.23	0.7882	0.348	0.7261	1.7278	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	24	24	6802	7069	4613	5733	24217	0.27	0.29	0.19	0.24	0	0.44	0.8946	0.1612	0.8537	1.9827	1091	822	598	573	845	575	603	1196	329	513	1582	1592	749	417	480	827	479	441	592	980	532	497	254	1192	462	322	386	898	790	602	603	505	343	869	922	585	398	183	425	409	361	383	1763	314	526	760	181	559	476	656	389	412	1088	304	271	785	113	245	306	498	1055	251	223	500
NA	NC_016056	NC_016056.1	Zeugodacus cucurbitae mitochondrion; complete genome.	6037	5498	2602	1688	0	15825	0.38	0.35	0.16	0.11	0.27	0.9084	0.2598	0.7797	1.8329	23	14	37	4626	6030	2010	2101	14767	0.35	0.39	0.12	0.14	0.26	0.8506	0.3195	0.7414	1.798	19	4	2	6	1459	1975	796	702	4932	0.3	0.41	0.16	0.14	0.3	0.8715	0.3686	0.6968	1.8443	8	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14	8	22	545	557	159	206	1467	0.37	0.38	0.11	0.14	0	0.25	0.8384	0.2644	0.783	1.784	0	2	2	755	887	163	305	2110	0.36	0.42	0.08	0.15	0	0.23	0.8399	0.3803	0.6952	1.753	10	13	50	39	23	5	45	109	4	3	68	26	40	0	23	18	38	6	50	93	2	27	3	29	2	13	34	25	53	47	28	35	9	59	40	6	17	7	20	15	3	2	18	9	2	37	19	21	18	33	5	2	167	33	0	26	1	4	2	9	33	5	45	16