GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_002863925.1	NC_009144	NC_009144.3	Equus caballus isolate Twilight breed thoroughbred chromosome 1; EquCab3.0; whole genome shotgun sequence.	54908420	54779607	39150627	39185272	236651	188260577	0.29	0.29	0.21	0.21	0	0.42	0.9513	0.0016	0.9984	1.9792	1234	1163	2397	27125513	30125037	20305465	21383713	55901	98995629	0.26	0.28	0.23	0.23	0.46	0.9216	0.1109	0.8987	1.9744	68259	867	807	1674	723934	624962	731716	743962	20	2824594	0.27	0.23	0.24	0.26	0.51	0.8637	0.306	0.7539	1.9402	0	19235156	21780972	14159073	15005877	21285	70202363	0.26	0.3	0.22	0.23	0	0.45	0.8973	0.1894	0.837	1.9492	0	342	319	661	437798	426458	359080	368578	1591914	0.28	0.25	0.23	0.24	0	0.47	0.8772	0.2522	0.7937	1.9524	7	2083558	2154449	1481958	1502051	2120	7224136	0.27	0.29	0.21	0.22	0	0.43	0.9053	0.156	0.8642	1.961	0	13	17	30	391	531	569	743	2234	0.18	0.24	0.25	0.33	0	0.58	0.8848	0.2933	0.7532	1.957	1	3	4	270	263	302	369	1204	0.2	0.22	0.27	0.31	0	0.58	0.887	0.1531	0.8603	1.9745	20484	24840	6554	12898	17068	26588	17487	12586	17098	18970	12815	22762	15409	6900	12048	14226	15125	21296	16500	14337	31752	9029	18356	14404	28629	16029	7946	13997	8715	18331	14898	14123	11361	8045	16328	16597	14105	19306	9969	22721	19081	8637	21147	18488	15377	9578	15149	19598	11967	11841	5869	8970	8155	18617	16434	20389	3972	9843	9673	4641	14641	5204	13013	5923
GCF_002863925.1	NC_009145	NC_009145.3	Equus caballus isolate Twilight breed thoroughbred chromosome 2; EquCab3.0; whole genome shotgun sequence.	34995107	35112850	25565475	25578182	98410	121350024	0.29	0.29	0.21	0.21	0	0.42	0.9528	0.0019	0.9981	1.9818	735	732	1467	15833299	17552196	12478740	13134000	30153	59028388	0.25	0.27	0.23	0.24	0.48	0.9239	0.1028	0.9053	1.9726	18098	518	519	1037	437260	372749	485580	489722	8	1785319	0.25	0.21	0.26	0.27	0.53	0.8617	0.3087	0.7524	1.9351	0	11329170	12768749	8696573	9207152	19438	42021082	0.24	0.28	0.23	0.25	0	0.48	0.8935	0.1966	0.8318	1.9457	0	211	200	411	263410	257595	231953	235361	988319	0.27	0.25	0.24	0.25	0	0.48	0.8788	0.2434	0.7995	1.9511	0	1118844	1159384	786501	797501	1000	3863230	0.27	0.29	0.22	0.22	0	0.44	0.903	0.1688	0.8534	1.9563	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12293	15671	3723	7566	11056	17629	11248	6672	11209	12716	6831	12772	9426	5049	7299	8570	8827	13643	9829	7610	20972	5715	11512	8236	19114	10796	4626	7953	4539	11906	9145	8050	7395	4162	9670	10922	9465	13935	6348	16206	12867	6564	11394	13283	10394	5454	10651	11711	7288	7124	4093	6628	3997	12234	10817	13452	2227	7462	7342	3256	8842	2740	7905	3971
GCF_002863925.1	NC_009146	NC_009146.3	Equus caballus isolate Twilight breed thoroughbred chromosome 3; EquCab3.0; whole genome shotgun sequence.	35792901	35729992	24853429	24886938	88493	121351753	0.29	0.29	0.2	0.21	0	0.41	0.9513	0.0016	0.9984	1.9762	631	592	1223	15673209	17293240	11640641	12226938	6952	56840980	0.26	0.28	0.22	0.23	0.46	0.9243	0.0994	0.9082	1.9704	31802	433	402	835	377492	317290	383332	392553	0	1470667	0.27	0.22	0.25	0.26	0.51	0.8629	0.3006	0.7575	1.9381	0	11106513	12441838	8138496	8582139	5125	40274111	0.25	0.29	0.22	0.23	0	0.45	0.8975	0.1824	0.8426	1.9449	0	187	181	368	240856	233893	188676	191315	854740	0.28	0.25	0.23	0.24	0	0.47	0.8801	0.2456	0.7977	1.9534	0	1129540	1158159	770484	786268	20	3844471	0.28	0.29	0.21	0.21	0	0.42	0.9049	0.148	0.8695	1.9563	0	4	5	9	106	149	190	222	667	0.16	0.22	0.28	0.33	0	0.62	0.8801	0.2483	0.7858	1.9472	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10043	12834	3388	6622	8996	14284	9091	6437	8365	9928	6620	12090	7715	3869	6453	7425	7438	10839	7929	7212	16065	4718	9156	7317	15052	8327	3779	6986	4195	9570	7415	7173	6067	4015	8688	9065	7492	10266	5159	11896	10416	4898	11055	9889	8299	5128	7827	10207	6062	6145	3261	5262	4197	9534	8570	10749	1979	5557	5546	2687	7826	2637	6629	3350
GCF_002863925.1	NC_009147	NC_009147.3	Equus caballus isolate Twilight breed thoroughbred chromosome 4; EquCab3.0; whole genome shotgun sequence.	32922966	32873431	21791682	21769742	104728	109462549	0.3	0.3	0.2	0.2	0	0.4	0.9491	0.0013	0.9987	1.9695	525	507	1032	16582904	18179959	11400265	11946815	23984	58133927	0.27	0.29	0.22	0.22	0.44	0.923	0.1042	0.9047	1.9705	10273	355	341	696	306477	267079	297842	299586	0	1170984	0.27	0.24	0.24	0.25	0.49	0.8631	0.3062	0.7537	1.94	0	12409075	13777180	8430124	8874436	15626	43506441	0.27	0.31	0.21	0.22	0	0.42	0.9016	0.1725	0.8504	1.9456	0	146	147	293	204930	200087	158775	161675	725467	0.28	0.25	0.23	0.24	0	0.46	0.8813	0.2394	0.8021	1.9542	78	1160379	1204894	784919	794128	1829	3946149	0.28	0.3	0.21	0.21	0	0.42	0.9072	0.1436	0.8738	1.9573	0	11	6	17	255	276	294	401	1226	0.21	0.23	0.24	0.32	0	0.56	0.8797	0.2047	0.8218	1.9732	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8550	10081	2794	5709	6989	9643	7116	6042	7123	8042	5882	9746	6713	2773	5112	6144	6161	8443	6939	6691	12468	3827	7286	6022	11428	6504	3283	6030	4159	7397	6165	6074	4892	3848	7572	6219	5777	7792	4215	8822	7820	3379	9468	7116	6172	4333	5942	8298	5214	4962	2344	3637	3621	7603	6829	8091	1463	3713	3805	1969	6486	2159	5168	2332
GCF_002863925.1	NC_009148	NC_009148.3	Equus caballus isolate Twilight breed thoroughbred chromosome 5; EquCab3.0; whole genome shotgun sequence.	28494292	28594239	19738650	19794818	137419	96759418	0.29	0.3	0.2	0.2	0	0.41	0.9504	0.0032	0.9968	1.9753	714	755	1469	14131316	15559327	10166690	10692124	28898	50578355	0.26	0.28	0.22	0.23	0.46	0.9212	0.1129	0.8974	1.9725	5202	499	492	991	416400	356352	408864	416475	0	1598091	0.27	0.23	0.24	0.26	0.5	0.8646	0.3087	0.752	1.9431	0	9585150	10752058	6659984	7066484	19444	34083120	0.26	0.3	0.21	0.22	0	0.43	0.896	0.2003	0.8295	1.9458	0	176	208	384	269213	267018	222048	224952	983231	0.27	0.25	0.23	0.24	0	0.47	0.8796	0.244	0.7982	1.9574	29	1164854	1216732	821046	832819	142	4035593	0.28	0.3	0.21	0.22	0	0.43	0.9053	0.1606	0.8597	1.961	0	33	36	69	813	1164	1401	1664	5042	0.16	0.23	0.28	0.33	0	0.61	0.8691	0.2808	0.7648	1.944	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12189	14571	3868	7535	9486	14627	9799	7216	9836	11202	7367	12883	9201	3488	7123	7906	8962	11251	9169	7834	17636	5434	10461	8060	17032	9098	4905	8073	5038	10609	8559	7915	6513	4536	9622	8642	7553	11044	5517	11835	10777	4186	12083	9736	8689	5296	8796	11424	6919	6682	3087	4012	4504	10585	9652	12006	2512	5114	4759	2533	8910	3055	7916	3269
GCF_002863925.1	NC_009149	NC_009149.3	Equus caballus isolate Twilight breed thoroughbred chromosome 6; EquCab3.0; whole genome shotgun sequence.	25468592	25490655	18091041	18096866	83622	87230776	0.29	0.29	0.21	0.21	0	0.41	0.951	0.0006	0.9994	1.9787	658	658	1316	12570928	13891724	9404264	9881770	22623	45771309	0.26	0.28	0.23	0.23	0.46	0.9217	0.1175	0.8931	1.9729	65757	489	498	987	400771	357235	438755	436446	0	1633207	0.26	0.22	0.25	0.27	0.52	0.8631	0.3114	0.7501	1.9399	0	8677692	9706722	6281367	6644698	11745	31322224	0.25	0.29	0.22	0.24	0	0.46	0.8922	0.2119	0.8208	1.9469	0	155	142	297	191035	189526	159173	162768	702502	0.27	0.25	0.23	0.24	0	0.48	0.8788	0.257	0.7896	1.9531	0	847603	878654	607923	613436	120	2947736	0.27	0.29	0.21	0.22	0	0.44	0.903	0.1697	0.8541	1.9607	0	1	1	2	34	38	35	48	155	0.22	0.25	0.22	0.31	0	0.53	0.9015	0.2427	0.7881	1.9793	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12045	14178	3641	7187	9443	15971	10437	6960	10287	11144	6752	11310	8689	4148	6432	8461	8473	12620	10104	8075	20263	5397	11825	7406	17191	9904	4704	7704	4928	10775	9537	7472	7220	3994	8983	9742	8402	12275	6145	14078	11629	5304	10204	11386	9190	5121	9412	10203	6676	6363	3308	5261	3982	10671	9426	11674	2046	6200	5634	2773	8150	2403	6959	3459
GCF_002863925.1	NC_009150	NC_009150.3	Equus caballus isolate Twilight breed thoroughbred chromosome 7; EquCab3.0; whole genome shotgun sequence.	28778787	28878264	21452099	21521656	156880	100787686	0.29	0.29	0.21	0.21	0	0.43	0.951	0.0033	0.9967	1.9837	883	876	1759	14404839	15786853	11552261	12044702	50125	53838780	0.24	0.27	0.25	0.24	0.49	0.9157	0.1405	0.8746	1.9664	183038	689	664	1353	487202	448215	581246	554381	1	2071045	0.24	0.21	0.27	0.28	0.55	0.8599	0.3143	0.7488	1.9259	0	9440662	10566616	7446265	7845421	14635	35313599	0.22	0.26	0.25	0.26	0	0.52	0.884	0.2265	0.8108	1.9253	0	178	178	356	222830	220260	194639	198711	836440	0.27	0.24	0.24	0.25	0	0.49	0.8761	0.2467	0.7967	1.9548	0	1386156	1416155	952377	969205	3883	4727776	0.27	0.28	0.22	0.23	0	0.45	0.9028	0.1615	0.8602	1.9603	0	3	2	5	63	87	90	123	363	0.17	0.24	0.25	0.34	0	0.59	0.8842	0.3211	0.7305	1.9539	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16249	16513	4115	9040	11748	18893	12804	8803	13784	14420	7393	12902	11626	6094	7587	9993	10469	16210	13936	9571	24998	6118	15545	8183	20499	13477	5602	8740	6112	12518	12978	9756	9342	4744	11491	11884	11794	16786	8073	19840	14662	9038	11421	15392	11623	5859	12211	11975	8618	8244	4938	8577	4434	13162	11714	14220	2344	9146	8951	3924	9203	3756	8614	4716
GCF_002863925.1	NC_009151	NC_009151.3	Equus caballus isolate Twilight breed thoroughbred chromosome 8; EquCab3.0; whole genome shotgun sequence.	27868396	27950212	20833019	20824567	86825	97563019	0.29	0.29	0.21	0.21	0	0.43	0.9519	0.0017	0.9983	1.9842	546	528	1074	12909213	14327116	10255841	10741568	31469	48265207	0.25	0.27	0.23	0.24	0.47	0.9246	0.1011	0.9068	1.976	22961	363	341	704	316730	267592	346053	348267	0	1278642	0.26	0.22	0.26	0.27	0.52	0.8637	0.303	0.7554	1.9379	0	8728877	9953484	6797009	7175123	23048	32677541	0.25	0.29	0.23	0.24	0	0.47	0.8987	0.1841	0.8407	1.9507	0	170	169	339	236035	229783	211995	214500	892313	0.26	0.24	0.24	0.25	0	0.49	0.8808	0.2352	0.8057	1.9545	92	954650	998430	693028	706465	0	3352573	0.27	0.28	0.22	0.23	0	0.45	0.9032	0.1523	0.8675	1.9632	0	1	5	6	78	101	112	142	433	0.18	0.23	0.26	0.33	0	0.59	0.8879	0.2524	0.7796	1.9623	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8875	11123	2624	5286	7764	12860	7910	4985	7921	8717	5107	9990	6705	3747	5126	6478	6088	9972	7301	5520	14751	4006	8290	6005	13468	7446	3158	5693	3273	8181	6944	5764	5468	3174	7023	7967	7001	9733	4503	11246	9587	4811	8488	9437	7186	4120	6972	8219	5018	5283	3148	4930	3132	8409	7427	9005	1473	5410	5534	2447	6320	1975	5398	3130
GCF_002863925.1	NC_009152	NC_009152.3	Equus caballus isolate Twilight breed thoroughbred chromosome 9; EquCab3.0; whole genome shotgun sequence.	25757783	25689090	17103543	17060672	182460	85793548	0.3	0.3	0.2	0.2	0	0.4	0.9476	0.0026	0.9974	1.9693	335	364	699	10528596	11595228	7300887	7681349	15687	37121747	0.27	0.29	0.22	0.23	0.45	0.923	0.101	0.9072	1.9635	23734	200	225	425	192085	163630	189114	196783	0	741612	0.27	0.23	0.24	0.26	0.5	0.863	0.2973	0.7596	1.9353	0	6955328	7761767	4719338	4986197	9778	24432408	0.26	0.3	0.21	0.23	0	0.44	0.8942	0.1866	0.8402	1.9299	0	120	129	249	212040	215186	157248	159689	744163	0.29	0.26	0.22	0.23	0	0.45	0.8818	0.2396	0.8015	1.9554	0	1325576	1416921	916257	935314	1060	4595128	0.28	0.3	0.2	0.21	0	0.41	0.9074	0.1462	0.872	1.9564	0	3	7	10	149	169	184	235	737	0.2	0.23	0.25	0.32	0	0.57	0.8801	0.2228	0.808	1.9705	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5429	6491	1820	3203	4469	7040	4488	3596	4194	4936	3612	5999	3894	1962	3154	3690	3561	5674	4224	3906	8333	2362	4458	3561	7704	3951	2043	3743	2303	4738	3911	3672	2823	2340	4305	4322	3725	4800	2675	5883	5050	2553	5904	5003	4047	2588	3858	5195	3057	3009	1595	2785	2388	4675	4171	5005	1153	2856	2657	1270	3901	1551	3167	1555
GCF_002863925.1	NC_009153	NC_009153.3	Equus caballus isolate Twilight breed thoroughbred chromosome 10; EquCab3.0; whole genome shotgun sequence.	24796993	24735223	17710528	17709346	203584	85155674	0.29	0.29	0.21	0.21	0	0.42	0.9507	0.0013	0.9987	1.9787	755	714	1469	10348908	11418332	8093138	8497108	74036	38431522	0.24	0.26	0.24	0.25	0.49	0.9191	0.1164	0.8942	1.9713	58544	553	514	1067	404544	352011	477636	474433	20	1708644	0.24	0.21	0.27	0.28	0.55	0.8581	0.3134	0.7494	1.9239	0	6741012	7622698	5049492	5360321	20722	24794245	0.23	0.27	0.25	0.26	0	0.51	0.8834	0.2548	0.7913	1.9288	54312	173	172	345	230772	226117	196337	199344	852570	0.27	0.24	0.24	0.25	0	0.49	0.8789	0.243	0.7997	1.9543	0	866604	893598	606016	625698	26147	3018063	0.27	0.29	0.22	0.22	0	0.44	0.901	0.1809	0.8461	1.9551	0	2	2	4	49	72	77	95	293	0.17	0.25	0.26	0.32	0	0.58	0.8675	0.2884	0.7552	1.9595	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11773	13075	3773	6703	9625	17158	10473	5649	11192	11929	7245	10898	9337	5321	6933	8743	8031	14599	10646	6569	20526	5144	11272	6425	16358	11070	3794	7081	3995	11305	9258	7368	7297	4656	9518	9795	9080	15358	5730	16367	12252	7601	9857	13285	9719	4718	11191	11954	6324	5953	4153	7790	4591	12522	10995	11693	1944	8025	8076	3002	7167	2433	7205	3555
GCF_002863925.1	NC_009154	NC_009154.3	Equus caballus isolate Twilight breed thoroughbred chromosome 11; EquCab3.0; whole genome shotgun sequence.	16721916	16812792	14042990	14063480	35739	61676917	0.27	0.27	0.23	0.23	0	0.46	0.9523	0.0034	0.9966	1.9941	753	751	1504	9738547	10910062	8630997	9054792	8873	38343271	0.24	0.26	0.25	0.26	0.51	0.92	0.1118	0.8978	1.9783	23872	579	530	1109	449323	385973	539736	534452	0	1909484	0.25	0.21	0.27	0.28	0.55	0.8619	0.3063	0.7531	1.9382	64	6972688	8011302	5916677	6265075	2243	27167985	0.23	0.27	0.25	0.26	0	0.51	0.886	0.2271	0.809	1.947	0	151	192	343	166543	163462	151036	152693	633734	0.25	0.24	0.25	0.26	0	0.51	0.8764	0.2572	0.789	1.9525	369	486934	511442	390856	395681	20	1784933	0.25	0.27	0.23	0.24	0	0.47	0.9002	0.171	0.8517	1.9631	0	19	16	35	486	579	661	852	2578	0.19	0.23	0.26	0.33	0	0.58	0.8853	0.2257	0.8015	1.9644	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12766	16302	3592	7508	11468	21366	12724	5965	12516	13480	6156	12741	9255	5150	6956	9495	8957	14959	10896	6955	24652	6292	13434	8252	21413	12379	4789	7660	4430	12443	10589	8124	8274	3654	9608	12470	10365	16758	7044	18694	14627	7638	10191	15063	12260	5159	11891	11394	7403	7323	4227	7150	3563	13272	11487	14115	2030	8480	7716	3524	9090	2340	8220	4504
GCF_002863925.1	NC_009155	NC_009155.3	Equus caballus isolate Twilight breed thoroughbred chromosome 12; EquCab3.0; whole genome shotgun sequence.	10132246	10065320	8232257	8247049	315887	36992759	0.27	0.27	0.22	0.22	0.01	0.45	0.9489	0.0042	0.9958	1.9878	469	508	977	4066597	4507699	4002659	4169587	45281	16791823	0.23	0.26	0.26	0.25	0.51	0.9127	0.1395	0.8751	1.9686	1874	366	384	750	223187	220599	297595	280176	0	1021557	0.23	0.2	0.29	0.29	0.57	0.8594	0.3146	0.7479	1.9283	0	2173169	2481031	2204094	2332320	17697	9208311	0.2	0.24	0.27	0.29	0	0.56	0.8767	0.2503	0.7926	1.9308	0	82	92	174	94013	91920	97627	101782	385342	0.25	0.23	0.25	0.26	0	0.52	0.878	0.2421	0.8015	1.9494	0	462818	486805	330404	339268	2238	1621533	0.24	0.26	0.24	0.25	0	0.49	0.8981	0.1924	0.8356	1.9521	0	4	5	9	144	166	157	209	676	0.21	0.25	0.23	0.31	0	0.54	0.8734	0.2275	0.8022	1.9806	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7574	7441	1974	4524	6069	9804	6935	4031	7080	6881	3285	5065	4782	3263	3540	4655	5125	9143	7111	4828	13397	3353	7940	4193	9569	6958	2544	4451	3018	6085	6661	4443	5038	1896	5179	6700	5684	9433	4168	10680	7140	4478	4619	8359	6287	3015	6758	4971	4371	3682	2289	4074	1839	7255	5830	7686	716	4752	4313	1851	3976	731	3253	2298
GCF_002863925.1	NC_009156	NC_009156.3	Equus caballus isolate Twilight breed thoroughbred chromosome 13; EquCab3.0; whole genome shotgun sequence.	11593072	11584134	10256226	10262367	88682	43784481	0.26	0.26	0.23	0.23	0	0.47	0.9509	0.0007	0.9993	1.9962	462	468	930	6551443	7404857	6151721	6440964	41710	26590695	0.23	0.25	0.26	0.27	0.53	0.9193	0.1161	0.8945	1.9723	20812	350	344	694	257067	224072	341571	335534	0	1158244	0.23	0.2	0.28	0.29	0.57	0.8587	0.3039	0.755	1.9294	0	4592724	5327578	4196518	4434130	25636	18576586	0.21	0.25	0.26	0.28	0	0.54	0.8838	0.2413	0.7995	1.9399	0	91	98	189	106358	103613	105762	106319	422052	0.26	0.23	0.25	0.26	0	0.51	0.8788	0.2477	0.7975	1.955	0	309071	325312	252725	260152	100	1147360	0.25	0.27	0.23	0.24	0	0.47	0.897	0.2039	0.8266	1.9603	0	8	18	26	310	428	504	661	1903	0.16	0.22	0.26	0.35	0	0.61	0.892	0.2949	0.749	1.9446	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6890	8934	1864	4311	7020	12414	7801	2977	7857	8830	3099	6819	5769	3792	4108	5007	5412	9517	6303	3659	15144	3578	8391	4247	12931	7618	2553	4332	1998	7788	5713	4673	4977	1903	5728	7419	6567	11221	3790	12427	9097	5467	5242	9848	7245	2931	8244	6949	4318	4209	3086	5341	1763	8778	7693	9012	1048	6185	5802	2551	4864	1263	4743	2969
GCF_002863925.1	NC_009157	NC_009157.3	Equus caballus isolate Twilight breed thoroughbred chromosome 14; EquCab3.0; whole genome shotgun sequence.	28136540	27980174	19206413	19168902	108206	94600235	0.3	0.3	0.2	0.2	0	0.41	0.9503	0.0038	0.9962	1.9738	466	502	968	12304697	13561435	8929420	9394265	14118	44203935	0.27	0.28	0.22	0.23	0.45	0.925	0.1011	0.907	1.9724	140273	307	350	657	291877	245488	290311	299941	0	1127617	0.27	0.22	0.24	0.26	0.5	0.8632	0.3157	0.7476	1.9361	0	8391472	9429259	5998493	6335429	12938	30167591	0.26	0.3	0.21	0.23	0	0.44	0.8982	0.1799	0.8442	1.9438	0	151	134	285	224058	219863	174423	178554	796898	0.28	0.25	0.23	0.24	0	0.47	0.8798	0.2432	0.799	1.9541	0	1231287	1287270	849616	870814	80	4239067	0.28	0.3	0.21	0.22	0	0.42	0.9084	0.1379	0.8782	1.9616	15798	5	3	8	104	134	156	197	591	0.18	0.23	0.26	0.33	0	0.6	0.8882	0.2529	0.7812	1.9568	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7801	10119	2624	5093	6579	10819	6676	4886	6734	7367	5480	9104	6059	2980	4829	5866	5844	8560	6556	5547	12132	3488	6780	6002	11034	6448	3156	5414	3532	7183	5983	5269	4740	3289	6331	7015	5367	7608	4122	9151	7738	3711	8769	7485	6062	3751	6031	8155	4642	4394	2625	4132	3168	7054	6900	7897	1649	4234	4267	1981	5845	2169	5403	2450
GCF_002863925.1	NC_009158	NC_009158.3	Equus caballus isolate Twilight breed thoroughbred chromosome 15; EquCab3.0; whole genome shotgun sequence.	27223979	27227111	19152142	19174065	74106	92851403	0.29	0.29	0.21	0.21	0	0.41	0.9497	0.0006	0.9994	1.9777	477	475	952	11080722	12343679	8207996	8684942	17234	40334573	0.26	0.28	0.22	0.23	0.45	0.925	0.1014	0.9062	1.9762	23722	306	318	624	286467	244121	268843	278975	0	1078406	0.27	0.23	0.24	0.26	0.49	0.8627	0.3056	0.7542	1.9406	0	7570901	8612994	5499621	5867331	7919	27558766	0.26	0.31	0.21	0.22	0	0.43	0.8979	0.1951	0.8326	1.9457	0	162	143	305	236465	232511	194365	197961	861302	0.28	0.25	0.23	0.24	0	0.47	0.8802	0.2422	0.8002	1.9588	0	1124144	1187442	809996	829685	1080	3952347	0.27	0.29	0.22	0.22	0	0.44	0.9046	0.1611	0.8595	1.9638	0	2	4	6	84	105	108	139	436	0.19	0.24	0.25	0.32	0	0.57	0.8733	0.2687	0.771	1.9658	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7762	9832	2691	4914	6471	9687	6486	5225	6010	7257	5356	9526	5942	2489	4882	5640	5766	7635	6325	5954	11155	3364	6596	6078	10615	5937	3027	5579	3694	7143	5708	5568	4237	3379	6263	6397	5125	6913	3865	8067	7039	2974	8906	6522	5781	4070	5357	7862	4716	4751	2243	3300	3507	6729	5917	7183	1686	3462	3285	1749	6067	2337	5299	2239
GCF_002863925.1	NC_009159	NC_009159.3	Equus caballus isolate Twilight breed thoroughbred chromosome 16; EquCab3.0; whole genome shotgun sequence.	25717455	25883043	18651499	18659322	51033	88962352	0.29	0.29	0.21	0.21	0	0.42	0.9514	0.0034	0.9966	1.981	468	475	943	14046088	15601448	10604738	11180836	27592	51460702	0.26	0.28	0.23	0.24	0.46	0.9251	0.0999	0.9076	1.9766	38235	337	322	659	317611	272771	331065	336556	0	1258003	0.26	0.22	0.25	0.27	0.51	0.8645	0.2983	0.7591	1.9422	0	9826961	11095474	7330118	7779263	13010	36044826	0.25	0.29	0.22	0.24	0	0.46	0.8952	0.1913	0.8357	1.9494	0	125	146	271	194435	189858	159265	163589	707147	0.27	0.25	0.23	0.24	0	0.48	0.883	0.24	0.8014	1.959	0	987303	1027067	717451	728610	25	3460456	0.27	0.29	0.21	0.22	0	0.44	0.906	0.1564	0.8642	1.9633	0	2	3	5	77	87	84	116	364	0.21	0.24	0.23	0.32	0	0.55	0.8946	0.2203	0.8084	1.9794	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9215	11142	2875	5425	7826	12094	7754	5249	7346	8581	5451	9602	6775	3264	5200	6522	6209	10174	7425	5968	14825	3978	8000	6235	13292	7420	3335	5967	3726	8035	6895	6002	5238	3305	7283	7819	6479	8729	4800	10913	8781	4193	8838	8808	7231	4055	6740	8165	5166	5294	2746	3998	3271	8080	7208	8825	1613	4622	4214	2274	6453	2053	5496	2686
GCF_002863925.1	NC_009160	NC_009160.3	Equus caballus isolate Twilight breed thoroughbred chromosome 17; EquCab3.0; whole genome shotgun sequence.	24717225	24860532	15548516	15563586	32571	80722430	0.31	0.31	0.19	0.19	0	0.39	0.948	0.0034	0.9966	1.9617	268	239	507	9204520	10132423	6107729	6458143	4741	31907556	0.28	0.3	0.21	0.22	0.42	0.9263	0.103	0.905	1.9677	33208	153	155	308	174255	143735	144878	151923	0	614791	0.29	0.24	0.22	0.25	0.47	0.8659	0.3052	0.7541	1.9384	0	6855759	7644724	4472794	4743281	4078	23720636	0.28	0.32	0.19	0.2	0	0.4	0.9043	0.1665	0.8536	1.9405	0	110	77	187	134565	135888	102050	104291	476794	0.28	0.26	0.22	0.23	0	0.46	0.879	0.2534	0.7947	1.9494	12	814195	850157	526968	537953	0	2729273	0.29	0.31	0.2	0.2	0	0.41	0.9077	0.1514	0.8683	1.9531	19450	2	3	5	66	88	95	116	365	0.18	0.24	0.26	0.32	0	0.58	0.8892	0.2513	0.7894	1.9635	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4539	6037	1664	2886	3497	5101	3242	3543	3290	3611	3709	5906	3409	1448	2822	3585	3246	3948	3796	3888	5703	1841	3478	3560	5889	3074	1819	3407	2384	3894	3322	3288	2457	2352	3856	3452	2923	3171	2332	3844	3805	1512	6430	3396	2940	2557	2740	4824	2764	2746	1270	1732	2409	3433	3160	3801	1123	1725	1930	942	3670	1652	2981	1206
GCF_002863925.1	NC_009161	NC_009161.3	Equus caballus isolate Twilight breed thoroughbred chromosome 18; EquCab3.0; whole genome shotgun sequence.	25088689	25148281	16153692	16184859	65827	82641348	0.3	0.3	0.2	0.2	0	0.39	0.9488	0.0021	0.9979	1.9654	319	313	632	11641362	12760687	7656677	8019580	14154	40092460	0.28	0.3	0.21	0.22	0.42	0.9255	0.0963	0.911	1.965	7516	202	183	385	263052	214128	207737	220784	0	905701	0.3	0.24	0.22	0.24	0.46	0.8666	0.3076	0.7523	1.9416	78	8282137	9198450	5347149	5613391	4252	28445379	0.29	0.33	0.19	0.2	0	0.38	0.9003	0.1668	0.8544	1.9329	0	118	124	242	171627	167085	128211	131253	598176	0.29	0.26	0.22	0.23	0	0.45	0.8791	0.2469	0.7967	1.9524	0	1081012	1122847	697385	711808	3025	3616077	0.29	0.31	0.2	0.21	0	0.41	0.9082	0.1387	0.8775	1.9545	0	2	2	4	47	66	80	94	287	0.16	0.23	0.28	0.33	0	0.61	0.8792	0.2477	0.7874	1.953	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7771	9475	2587	4357	5338	7162	4919	5224	4577	5594	5673	8722	5713	2085	4479	5085	4799	6090	5006	5458	8733	2802	4935	5256	8673	4266	2912	5789	3417	5701	4480	4774	3364	3892	5942	4746	4238	4285	3385	5325	5256	1935	9730	4295	4010	3757	3571	6938	3760	4085	1680	2284	3922	5019	4692	6201	1812	2161	2331	1289	5966	2545	4571	1725
GCF_002863925.1	NC_009162	NC_009162.3	Equus caballus isolate Twilight breed thoroughbred chromosome 19; EquCab3.0; whole genome shotgun sequence.	18817692	19002708	12361352	12407106	92881	62681739	0.3	0.3	0.2	0.2	0	0.4	0.9471	0.0067	0.9933	1.9676	288	277	565	9005725	9878398	6142374	6429852	12081	31468430	0.28	0.3	0.21	0.22	0.43	0.9263	0.1025	0.9055	1.9691	6101	191	206	397	184728	156363	164401	167855	0	673347	0.28	0.24	0.23	0.25	0.48	0.865	0.3129	0.749	1.9416	0	5872972	6536179	3963796	4153606	8770	20535323	0.28	0.32	0.2	0.21	0	0.41	0.9027	0.1694	0.8523	1.9463	0	93	68	161	131278	129454	98366	100843	459941	0.28	0.26	0.23	0.23	0	0.46	0.8829	0.2299	0.8079	1.9607	0	1046811	1117870	683361	707240	80	3555362	0.29	0.31	0.2	0.21	0	0.41	0.9099	0.1378	0.8795	1.9561	0	2	0	2	35	27	39	44	145	0.24	0.19	0.27	0.3	0	0.57	0.8839	0.1957	0.8317	1.9727	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5041	6014	1709	3225	4080	5775	3953	3466	3911	4487	3595	6252	4019	1489	3068	3548	3848	4385	3987	3976	6662	2024	4224	3662	6792	3518	2099	3648	2468	4501	3519	3653	2694	2313	4178	3466	3293	3832	2399	4302	4086	1582	6034	3531	3478	2619	3068	5215	2981	3162	1210	1741	2311	4116	3671	4813	1170	1870	1922	1074	4288	1601	3388	1317
GCF_002863925.1	NC_009163	NC_009163.3	Equus caballus isolate Twilight breed thoroughbred chromosome 20; EquCab3.0; whole genome shotgun sequence.	19141589	19127835	13478313	13533186	62409	65343332	0.29	0.29	0.21	0.21	0	0.41	0.9492	0.0024	0.9976	1.9779	585	577	1162	8420183	9237692	6292589	6611483	10115	30572062	0.25	0.27	0.24	0.25	0.48	0.9153	0.1323	0.881	1.9759	116653	366	341	707	251772	221241	274036	275260	0	1022309	0.25	0.22	0.26	0.27	0.53	0.8617	0.3152	0.7479	1.9384	0	5402023	6051632	3907007	4147878	5571	19514111	0.24	0.28	0.23	0.24	0	0.47	0.8894	0.2327	0.8066	1.9486	0	120	124	244	168056	162763	132134	134586	597539	0.28	0.25	0.24	0.24	0	0.47	0.8792	0.2488	0.7972	1.9548	0	693841	733819	487763	490595	384	2406402	0.27	0.29	0.21	0.22	0	0.43	0.9029	0.1678	0.8563	1.9579	0	95	101	196	2913	3307	3719	4664	14603	0.2	0.23	0.25	0.32	0	0.57	0.8879	0.2178	0.8103	1.9684	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7648	9475	2408	4677	5868	9878	6708	4244	6678	7169	4044	7193	5557	2665	4117	5011	5617	7810	5921	4809	12332	3436	7189	4687	10697	6412	2746	4848	2915	6874	5840	4743	4397	2562	5837	5759	5041	7954	3512	8806	7052	3297	6634	7025	5317	3208	6331	6704	4142	3809	2153	3314	2470	7045	6607	7604	1167	3782	3522	1637	4717	1417	4232	2062
GCF_002863925.1	NC_009164	NC_009164.3	Equus caballus isolate Twilight breed thoroughbred chromosome 21; EquCab3.0; whole genome shotgun sequence.	17569747	17576840	11854836	11844601	138434	58984458	0.3	0.3	0.2	0.2	0	0.4	0.9489	0.0006	0.9994	1.9713	264	259	523	6834896	7557907	4911976	5133719	10604	24449102	0.25	0.28	0.23	0.24	0.47	0.9221	0.1105	0.8991	1.9661	21208	195	180	375	163361	142051	178833	178310	0	662555	0.26	0.22	0.25	0.27	0.52	0.8638	0.3006	0.7574	1.9331	0	4497096	5070437	3224267	3402027	1341	16195168	0.25	0.29	0.22	0.24	0	0.47	0.8935	0.193	0.8345	1.9357	0	68	72	140	111104	110054	84754	86344	392256	0.28	0.26	0.23	0.23	0	0.46	0.8814	0.2329	0.8054	1.9557	0	501494	532458	332882	337185	7099	1711118	0.28	0.3	0.21	0.22	0	0.42	0.9018	0.1467	0.8718	1.9465	0	2	0	2	25	35	44	52	156	0.17	0.22	0.28	0.33	0	0.61	0.8454	0.3471	0.7211	1.9357	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4608	5382	1478	2895	4041	5943	4126	2750	3947	4667	2705	4966	3619	1940	2612	3174	3167	4866	3866	3268	7464	2085	4362	3087	6467	3808	1692	2856	1870	4492	3455	3118	2767	1693	3721	4015	3484	4998	2379	5890	4491	2617	4681	4826	3762	2191	3628	4203	2764	2821	1608	2926	1636	4427	3605	4693	814	2771	2927	1295	3405	1162	3142	1562
GCF_002863925.1	NC_009165	NC_009165.3	Equus caballus isolate Twilight breed thoroughbred chromosome 22; EquCab3.0; whole genome shotgun sequence.	13946122	13921364	11520446	11496899	43358	50928189	0.27	0.27	0.23	0.23	0	0.45	0.9495	0.0019	0.9981	1.993	388	365	753	6707032	7466820	5772985	6047773	9285	26003895	0.24	0.26	0.24	0.25	0.5	0.922	0.1046	0.9037	1.9793	13697	285	249	534	193226	160762	234098	234278	0	822364	0.25	0.21	0.27	0.28	0.55	0.8613	0.3086	0.752	1.933	0	4743420	5344839	3961041	4171873	7940	18229113	0.23	0.27	0.24	0.26	0	0.5	0.8936	0.2014	0.8283	1.953	0	102	108	210	109855	108275	107178	109066	434374	0.25	0.23	0.25	0.26	0	0.51	0.8775	0.2538	0.7945	1.9533	0	338321	356494	284808	286319	1124	1267066	0.25	0.27	0.24	0.24	0	0.48	0.9004	0.1762	0.8472	1.9689	0	0	1	1	14	22	16	21	73	0.19	0.3	0.22	0.29	0	0.51	0.8682	0.3574	0.6991	1.9755	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5406	7167	1418	3113	5130	8722	5296	2497	5226	5898	2631	5400	4109	2589	3148	3902	3572	6491	4340	2960	10085	2621	5641	3432	8892	5165	1863	3205	1676	5469	4062	3381	3481	1530	4392	5449	4545	7149	2797	8436	6580	3676	4555	6730	5061	2199	5127	5055	3006	2995	2174	3957	1445	5666	5474	6365	839	3949	3920	1532	3784	949	3462	1907
GCF_002863925.1	NC_009166	NC_009166.3	Equus caballus isolate Twilight breed thoroughbred chromosome 23; EquCab3.0; whole genome shotgun sequence.	16596249	16456819	11221752	11188464	92900	55556184	0.3	0.3	0.2	0.2	0	0.4	0.9474	0.0057	0.9943	1.9724	232	260	492	6903473	7678345	4882523	5131248	17318	24612907	0.27	0.29	0.22	0.22	0.44	0.9235	0.1028	0.9055	1.9715	0	127	154	281	134663	112396	127104	128682	20	502865	0.28	0.23	0.24	0.25	0.49	0.8657	0.298	0.7585	1.9415	0	4280056	4889909	3032046	3204605	1017	15407633	0.27	0.31	0.2	0.22	0	0.42	0.904	0.1674	0.8533	1.9484	0	101	98	199	147453	143804	119384	123847	534488	0.28	0.25	0.23	0.24	0	0.47	0.8803	0.253	0.7941	1.9527	0	1126463	1171269	714372	729960	60	3742124	0.28	0.3	0.21	0.21	0	0.42	0.9065	0.1424	0.8751	1.9586	0	0	1	1	13	18	19	22	72	0.18	0.25	0.26	0.31	0	0.57	0.9099	0.2345	0.7929	1.9757	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3745	4364	1241	2278	2825	4683	2869	2434	2955	3130	2617	4540	2990	1213	2277	2661	2687	3516	3007	2645	4994	1515	3167	2796	4919	2694	1423	2511	1591	3363	2708	2568	2173	1492	3024	3161	2522	3151	1765	3906	3370	1435	4269	2979	2499	1854	2481	3867	2091	2277	1018	1507	1605	3273	2668	3513	687	1528	1671	874	2935	1009	2303	1015
GCF_002863925.1	NC_009167	NC_009167.3	Equus caballus isolate Twilight breed thoroughbred chromosome 24; EquCab3.0; whole genome shotgun sequence.	13650583	13746807	10386225	10439005	66063	48288683	0.28	0.28	0.22	0.22	0	0.43	0.9489	0.006	0.994	1.9858	387	305	692	6849649	7656087	5395064	5713527	30179	25644506	0.25	0.28	0.22	0.24	0.47	0.9166	0.1292	0.8846	1.9721	108097	198	190	388	175605	145250	176160	182232	0	679247	0.27	0.22	0.24	0.26	0.5	0.8627	0.3152	0.7481	1.9361	0	4741333	5437039	3635023	3873538	6560	17693493	0.25	0.3	0.22	0.23	0	0.45	0.8984	0.1832	0.8412	1.9461	0	178	104	282	120944	117466	108119	111777	458306	0.26	0.25	0.23	0.25	0	0.49	0.8766	0.2576	0.7906	1.954	6	433098	437369	317482	322406	8620	1518975	0.26	0.28	0.22	0.23	0	0.46	0.9004	0.1757	0.8495	1.9573	0	1	1	2	24	31	40	52	147	0.16	0.21	0.27	0.35	0	0.63	0.9015	0.2596	0.7711	1.9402	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4712	6142	1507	2947	4086	7111	4079	2912	3986	4636	2987	5954	3698	2012	2868	3492	3521	4986	3666	3196	7700	2029	4184	3580	7054	3865	1778	3221	2022	4147	3457	3217	2750	1835	3767	4186	3379	4531	2381	5705	4863	2325	5089	4471	3643	2260	3446	4877	2723	2713	1517	2332	1919	4307	4256	4879	872	2574	2485	1207	3603	1101	3047	1487
GCF_002863925.1	NC_009168	NC_009168.3	Equus caballus isolate Twilight breed thoroughbred chromosome 25; EquCab3.0; whole genome shotgun sequence.	10997784	11019411	9091048	9096087	78638	40282968	0.27	0.27	0.23	0.23	0	0.45	0.9492	0.0013	0.9987	1.9924	375	340	715	5589101	6277035	5066801	5310004	23681	22266622	0.23	0.26	0.25	0.25	0.51	0.9191	0.1177	0.8932	1.9724	31835	288	252	540	207119	181538	254295	248729	0	891681	0.24	0.2	0.27	0.28	0.56	0.8609	0.3028	0.7565	1.931	0	3889932	4474594	3497625	3688599	17654	15568404	0.22	0.26	0.25	0.27	0	0.52	0.8904	0.2079	0.8233	1.947	0	73	82	155	98830	97792	91390	92319	380331	0.26	0.24	0.25	0.25	0	0.5	0.8814	0.2464	0.7975	1.9556	0	314765	317453	245332	249030	0	1126580	0.26	0.27	0.23	0.24	0	0.47	0.9036	0.1638	0.8577	1.9627	0	1	1	2	22	39	34	50	145	0.17	0.27	0.23	0.33	0	0.56	0.8036	0.4458	0.6513	1.9383	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6137	7410	1613	3650	5543	8774	5868	2945	6051	6164	2926	5568	4447	2819	3256	4359	4404	7222	5190	3399	11426	2800	6293	3685	9678	5809	2084	3512	2134	5872	5057	3760	3991	1720	4785	5781	4848	7591	3240	9132	6622	3650	4795	7175	5291	2465	5717	5349	3584	3379	2165	3624	1638	6358	5615	6432	787	3996	4054	1697	3885	982	3488	2095
GCF_002863925.1	NC_009169	NC_009169.3	Equus caballus isolate Twilight breed thoroughbred chromosome 26; EquCab3.0; whole genome shotgun sequence.	12984978	12978467	8585634	8571722	26841	43147642	0.3	0.3	0.2	0.2	0	0.4	0.944	0.0011	0.9989	1.9694	180	188	368	4442762	4859527	3231036	3371928	2066	15907319	0.25	0.28	0.23	0.23	0.46	0.9155	0.1303	0.8835	1.9704	0	115	136	251	92254	80054	99589	100548	0	372445	0.26	0.22	0.25	0.27	0.53	0.8623	0.3192	0.7452	1.9315	0	3042461	3361434	2180882	2287667	2026	10874470	0.25	0.29	0.22	0.24	0	0.46	0.9004	0.1762	0.8464	1.9491	0	65	49	114	79523	79505	66545	68378	293951	0.27	0.25	0.23	0.24	0	0.47	0.8801	0.245	0.799	1.9506	0	332753	347140	229186	234792	0	1143871	0.27	0.3	0.21	0.22	0	0.43	0.9057	0.1458	0.8709	1.9593	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2482	3128	743	1572	2142	3274	2091	1425	2696	2564	1472	2728	2037	1233	1628	1845	2009	2846	1979	1687	3985	1142	2214	1556	3905	2201	895	1657	1248	2645	1832	1532	1566	903	2050	2176	1789	2980	1415	2962	2853	1249	2709	2695	3228	1161	2046	2574	1898	1348	949	1378	1006	2240	2131	2636	543	1405	1552	728	1805	650	1713	818
GCF_002863925.1	NC_009170	NC_009170.3	Equus caballus isolate Twilight breed thoroughbred chromosome 27; EquCab3.0; whole genome shotgun sequence.	12195848	12138673	7954732	7917062	48375	40254690	0.3	0.3	0.2	0.2	0	0.39	0.9482	0.0047	0.9953	1.9672	176	157	333	5325355	5818817	3629847	3811084	2585	18587688	0.28	0.29	0.21	0.22	0.43	0.9248	0.09	0.9161	1.9727	93	114	103	217	97817	83496	87604	90787	0	359704	0.28	0.24	0.23	0.25	0.48	0.8659	0.3009	0.7574	1.9429	0	4079926	4515832	2711578	2856815	2545	14166696	0.28	0.32	0.19	0.21	0	0.4	0.9049	0.16	0.8595	1.9457	0	60	52	112	78463	76735	59564	58868	273630	0.28	0.26	0.23	0.23	0	0.46	0.8842	0.2401	0.802	1.9551	0	326715	335196	228419	228875	20	1119225	0.28	0.3	0.21	0.21	0	0.42	0.9069	0.1466	0.8712	1.9605	0	0	1	1	14	17	19	22	72	0.19	0.24	0.26	0.31	0	0.57	0.887	0.1699	0.8436	1.9809	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2686	3130	952	1774	2125	3041	2023	1825	1982	2317	1962	3177	2082	857	1666	1884	1972	2415	2041	2157	3627	1132	2235	1996	3405	1898	1039	1869	1293	2353	1816	1948	1512	1357	2241	1962	1699	2003	1295	2547	2138	1008	3410	1959	1851	1388	1769	2682	1726	1621	756	1046	1264	2129	1881	2395	637	1096	1147	605	2041	881	1869	705
GCF_002863925.1	NC_009171	NC_009171.3	Equus caballus isolate Twilight breed thoroughbred chromosome 28; EquCab3.0; whole genome shotgun sequence.	13546354	13558157	10108702	10091215	44070	47348498	0.29	0.29	0.21	0.21	0	0.43	0.9439	0.0013	0.9987	1.9841	273	288	561	6489592	7156753	5056762	5327088	11807	24042002	0.25	0.27	0.24	0.25	0.48	0.9237	0.0989	0.9083	1.9718	440	191	191	382	167566	139752	177018	179645	0	663981	0.26	0.22	0.25	0.27	0.52	0.8613	0.3013	0.7573	1.9336	0	4476442	5049600	3476469	3684382	10662	16697555	0.24	0.28	0.23	0.24	0	0.47	0.8937	0.1893	0.8371	1.9395	0	80	95	175	126663	124007	109262	111374	471306	0.27	0.24	0.24	0.25	0	0.48	0.8783	0.2426	0.8013	1.9549	0	489070	508599	347033	352398	0	1697100	0.27	0.28	0.22	0.23	0	0.45	0.9054	0.1488	0.8686	1.9611	0	3	0	3	37	47	60	72	216	0.17	0.22	0.28	0.33	0	0.61	0.8887	0.2098	0.816	1.9539	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4638	5951	1443	2837	4096	6337	4200	2739	3830	4501	2898	5327	3410	2013	2673	3379	3327	4893	3788	2963	7650	2046	4081	3194	6879	3784	1731	2901	1801	4276	3255	3042	2680	1719	3659	4109	3348	4964	2410	5849	4620	2672	4853	4812	3678	2113	3696	4444	2604	2640	1626	2552	1805	4221	3816	4676	833	2703	2815	1236	3526	1114	2939	1517
GCF_002863925.1	NC_009172	NC_009172.3	Equus caballus isolate Twilight breed thoroughbred chromosome 29; EquCab3.0; whole genome shotgun sequence.	10377565	10336669	7011240	7011091	39555	34776120	0.3	0.3	0.2	0.2	0	0.4	0.9479	0.002	0.998	1.9725	144	148	292	4603237	5135457	3213204	3393764	6687	16352349	0.28	0.3	0.21	0.22	0.42	0.9266	0.1007	0.9071	1.9716	0	88	77	165	85316	67942	69867	73722	0	296847	0.3	0.23	0.22	0.25	0.47	0.8646	0.3202	0.7439	1.9414	0	3147887	3590156	2177522	2300722	6587	11222874	0.28	0.33	0.19	0.2	0	0.39	0.9052	0.1623	0.8576	1.9426	0	53	69	122	83241	79835	65543	66841	295460	0.28	0.25	0.23	0.24	0	0.46	0.885	0.2275	0.8092	1.9638	0	341675	345971	236948	243559	0	1168153	0.28	0.3	0.2	0.21	0	0.42	0.9035	0.1689	0.8552	1.9576	0	1	0	1	12	17	19	26	74	0.16	0.23	0.26	0.35	0	0.61	0.8747	0.328	0.7183	1.9469	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2294	2929	749	1432	1774	2604	1644	1714	1532	1701	1757	3032	1768	770	1439	1683	1614	1873	1581	1684	2664	912	1692	1865	2862	1468	881	1619	1082	2040	1499	1559	1156	1112	1898	1678	1367	1589	1068	1786	1720	672	3133	1460	1408	1236	1317	2367	1271	1317	619	786	1151	1677	1475	2023	510	879	847	526	1955	662	1324	710
GCF_002863925.1	NC_009173	NC_009173.3	Equus caballus isolate Twilight breed thoroughbred chromosome 30; EquCab3.0; whole genome shotgun sequence.	9358837	9379903	6304419	6317373	35427	31395959	0.3	0.3	0.2	0.2	0	0.4	0.9485	0.0022	0.9979	1.9718	135	140	275	4317345	4753412	3072931	3232634	19479	15395801	0.26	0.28	0.23	0.23	0.46	0.9224	0.1066	0.902	1.9643	530	84	87	171	91131	75167	85245	90092	0	341635	0.28	0.23	0.24	0.26	0.49	0.8629	0.3053	0.7543	1.9379	0	3172484	3553728	2202403	2318935	17367	11264917	0.26	0.3	0.21	0.22	0	0.43	0.9007	0.1747	0.8477	1.94	0	51	48	99	63973	63054	55676	55746	238449	0.27	0.25	0.24	0.24	0	0.47	0.8836	0.2427	0.7995	1.949	0	337323	335916	234686	239637	20	1147582	0.28	0.29	0.22	0.22	0	0.43	0.9042	0.1541	0.8654	1.959	0	1	0	1	12	18	19	24	73	0.16	0.25	0.26	0.33	0	0.59	0.8987	0.3163	0.7292	1.9593	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2546	3270	860	1455	2124	3261	2086	1713	1942	2149	1818	2933	1751	1009	1445	1746	1815	2410	1970	1630	3519	1055	2077	1806	3540	1760	956	1697	1110	2287	1696	1667	1428	1113	1926	1987	1661	2103	1133	2658	2145	1015	2962	2054	1703	1285	1836	2456	1331	1442	779	1248	1198	1974	1952	2176	562	1230	1285	643	1930	727	1494	784
GCF_002863925.1	NC_009174	NC_009174.3	Equus caballus isolate Twilight breed thoroughbred chromosome 31; EquCab3.0; whole genome shotgun sequence.	7714443	7565618	5377228	5339531	4219	26001039	0.3	0.29	0.21	0.21	0	0.41	0.9514	0.0133	0.9868	1.9775	110	107	217	3760048	4122348	2743968	2883397	245	13510006	0.27	0.29	0.22	0.22	0.44	0.9281	0.0955	0.9113	1.9782	0	69	80	149	75680	61585	73433	75972	0	286670	0.27	0.22	0.24	0.26	0.5	0.8675	0.3051	0.7532	1.9453	0	2880976	3198627	2075630	2190377	160	10345770	0.27	0.31	0.2	0.22	0	0.42	0.9082	0.1576	0.8608	1.957	0	39	28	67	59961	59218	48569	48370	216118	0.28	0.25	0.23	0.24	0	0.47	0.8852	0.2381	0.8037	1.961	0	269906	287469	187550	194775	0	939700	0.27	0.3	0.21	0.22	0	0.43	0.9071	0.1582	0.8633	1.9627	0	0	1	1	19	19	20	25	83	0.23	0.23	0.24	0.3	0	0.54	0.887	0.1111	0.9	1.99	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2104	2611	621	1233	1744	2734	1679	1230	1638	1868	1253	2536	1515	907	1341	1479	1491	1882	1526	1367	3053	874	1916	1539	3197	1604	730	1456	778	1902	1397	1441	1206	828	1538	1779	1490	1827	975	2014	1987	916	2369	1744	1482	1014	1440	2186	1123	1174	670	1058	875	1773	1727	1966	350	1047	1153	565	1659	528	1312	668
GCF_002863925.1	NC_009175	NC_009175.3	Equus caballus isolate Twilight breed thoroughbred chromosome X; EquCab3.0; whole genome shotgun sequence.	38768873	38862431	25062695	25112791	399994	128206784	0.3	0.3	0.2	0.2	0	0.39	0.9471	0.0022	0.9978	1.9648	553	517	1070	13400859	14809162	9345137	9682490	126951	47364599	0.26	0.28	0.22	0.23	0.46	0.9194	0.1148	0.8952	1.9709	22466	442	333	775	330260	278206	318259	327220	0	1253945	0.27	0.23	0.24	0.26	0.5	0.865	0.3063	0.7539	1.9436	0	9154890	10236519	6215041	6463570	50184	32120204	0.26	0.3	0.22	0.23	0	0.44	0.8946	0.2023	0.8284	1.9433	0	95	166	261	115967	119772	91229	93619	420587	0.27	0.26	0.23	0.24	0	0.46	0.8767	0.2599	0.7873	1.953	0	857794	940993	582946	594171	27675	3003579	0.27	0.3	0.21	0.22	0	0.43	0.9032	0.1827	0.845	1.9547	0	1	2	3	37	54	58	68	217	0.17	0.25	0.27	0.31	0	0.58	0.8923	0.2719	0.7671	1.9625	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9679	11712	3144	5918	7752	12593	7911	5872	7165	8050	6315	11009	6892	2658	5494	6363	6799	9080	7163	6359	13308	4401	7621	7219	12845	7091	3846	6402	4136	8328	6509	6233	5097	3776	7010	7003	5985	8176	4554	10122	8069	3501	9659	7873	6292	4316	6580	8668	4912	5285	2344	3380	3504	8367	6950	9565	1661	3826	3801	2195	7208	2150	5775	2665
NA	NC_001640	NC_001640.1	Equus caballus mitochondrion; complete genome.	5358	4312	4754	2236	0	16660	0.32	0.26	0.29	0.13	0	0.42	0.9275	0.4684	0.6376	1.9362	12	1	13	3448	3102	3333	1517	0	11400	0.3	0.28	0.28	0.14	0.42	0.8875	0.546	0.6072	1.9071	51	8	1	9	2306	2171	2255	1119	0	7851	0.3	0.28	0.27	0.15	0.42	0.8858	0.5471	0.6065	1.9061	43	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	6	3	9	206	188	126	114	634	0.33	0.3	0.2	0.18	0	0.38	0.8758	0.3321	0.7244	1.9227	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	36	6	63	37	53	17	46	96	51	8	28	53	78	10	9	72	25	20	117	59	27	17	94	22	7	69	180	17	34	72	142	43	39	108	89	34	56	41	55	63	31	12	59	45	14	24	25	1	3	15	7	4	40	30	0	57	2	3	6	5	53	6	57	25