GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_030028045.1	NC_080186	NC_080186.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 1; mHipAmp2.hap2; whole genome shotgun sequence.	70658617	70347012	49601969	49422217	2400	240032215	0.29	0.29	0.21	0.21	0.41	0.9506	0.004	0.996	1.9778	1397	1462	2859	28261325	31715355	20871511	22010017	0	102858208	0.25	0.27	0.23	0.24	0.47	0.9159	0.1283	0.8843	1.9695	177447	1054	1121	2175	862430	728496	906642	917240	3414808	0.26	0.22	0.25	0.27	0.52	0.8623	0.3096	0.7514	1.9359	0	21555701	24517630	15568198	16472450	0	78113979	0.25	0.29	0.22	0.24	0	0.46	0.8924	0.2036	0.8265	1.9381	211	199	410	71423	67423	60031	60715	259592	0.27	0.24	0.24	0.25	0	0.49	0.8719	0.2598	0.7862	1.9525	0	1091769	1180747	767680	796684	3836880	0.27	0.29	0.22	0.22	0	0.44	0.9059	0.153	0.8663	1.9622	92	102	194	2472	3416	3627	4667	14182	0.17	0.24	0.26	0.33	0.58	0.8688	0.2928	0.752	1.9583	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23863	30733	7805	14963	20805	33026	21106	14093	20986	22976	14416	26592	18078	8933	14408	16880	17291	25290	19370	15651	38483	11334	21260	17449	35952	20422	9356	15525	9939	22544	17927	15906	14078	8822	19016	20734	17532	25451	12517	29115	24116	11541	24506	24241	18947	11115	19504	22700	13715	13622	7216	11777	8649	22927	19945	25118	4498	13137	13313	5776	17432	5792	15134	7316
GCF_030028045.1	NC_080187	NC_080187.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 2; mHipAmp2.hap2; whole genome shotgun sequence.	67793897	67858752	48093459	47980508	7000	231733616	0.29	0.29	0.21	0.21	0.41	0.95	0.0017	0.9983	1.9788	1449	1663	3112	26485998	29841497	19880362	20961045	200	97169102	0.27	0.26	0.22	0.24	0.47	0.9034	0.1835	0.8396	1.9696	41562	1010	1001	2011	816216	702547	867157	870904	3256824	0.26	0.22	0.25	0.27	0.52	0.8624	0.3083	0.7526	1.9349	0	20472977	23341538	15020412	15895536	200	74730663	0.25	0.29	0.22	0.24	0	0.46	0.8937	0.198	0.8305	1.9409	365	607	972	79886	72398	61402	67670	281356	0.3	0.23	0.21	0.25	0	0.47	0.8652	0.3198	0.7343	1.959	0	925124	983081	654717	672839	3235761	0.27	0.29	0.22	0.22	0	0.44	0.9036	0.1609	0.8598	1.9594	35	37	72	930	1292	1361	1703	5286	0.18	0.25	0.25	0.32	0.58	0.8698	0.282	0.7622	1.9605	1	1	2	49	52	62	75	238	0.21	0.22	0.26	0.32	0	0.58	0.8926	0.1245	0.8847	1.9789	22901	28574	7316	14103	19681	31497	20220	13606	19912	21141	13673	25437	17281	8431	13524	16320	17002	24808	18970	15888	37359	10645	21367	16495	33707	19343	8429	14640	9590	21201	17683	15689	13683	8387	18005	20178	16926	24198	12030	28773	22761	11246	22831	22641	17883	10578	18323	21810	13488	13144	6760	11215	8616	21851	19002	22971	3999	12546	12263	5599	16198	5403	13765	6960
GCF_030028045.1	NC_080188	NC_080188.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 3; mHipAmp2.hap2; whole genome shotgun sequence.	59534968	59583971	40342837	40040756	6400	199508932	0.3	0.3	0.2	0.2	0.4	0.9455	0.0042	0.9958	1.9726	1136	1071	2207	21987206	24619945	15532091	16333608	200	78473050	0.25	0.28	0.23	0.24	0.47	0.9142	0.143	0.8721	1.9655	37238	942	858	1800	676480	608653	699485	694537	2679155	0.26	0.23	0.25	0.26	0.51	0.8631	0.3068	0.753	1.9371	0	17801195	20092275	12206975	12868166	0	62968611	0.25	0.29	0.22	0.23	0	0.46	0.8916	0.2017	0.8284	1.933	114	111	225	51442	48679	46105	46440	192666	0.27	0.24	0.24	0.25	0	0.49	0.8712	0.2593	0.7864	1.9507	0	554929	605230	391644	399510	1951313	0.26	0.29	0.22	0.23	0	0.45	0.9015	0.1657	0.8564	1.9561	47	78	125	1486	2149	2543	3035	9213	0.16	0.23	0.28	0.33	0.6	0.8691	0.2778	0.7653	1.9468	1	0	1	21	23	37	38	119	0.18	0.19	0.31	0.32	0	0.63	0.8747	0.0588	0.9434	1.9498	20250	22471	6434	12390	15186	23601	16184	13096	16174	17436	12384	20190	14002	6572	10981	13827	14326	21026	17113	14782	30232	8971	17742	13734	25855	16092	7683	13625	9254	17295	16121	13130	12191	7820	15239	15996	13563	19372	10657	21774	17328	8165	19737	17402	14463	9449	14432	17043	11756	11224	5133	8347	7850	17386	14978	19048	3356	9261	8871	4280	13508	4625	11164	5354
GCF_030028045.1	NC_080189	NC_080189.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 4; mHipAmp2.hap2; whole genome shotgun sequence.	55409103	55656205	38689162	38557875	1400	188313745	0.29	0.3	0.21	0.2	0.41	0.9489	0.0039	0.9961	1.9766	870	825	1695	24886939	27943568	17826405	18836538	400	89493850	0.26	0.28	0.22	0.24	0.46	0.9165	0.1359	0.8789	1.9668	47867	627	665	1292	561011	469029	567358	577733	2175131	0.27	0.23	0.24	0.26	0.5	0.8629	0.3098	0.7514	1.9357	0	19891935	22519793	13957705	14773849	400	71143682	0.26	0.3	0.21	0.23	0	0.44	0.8981	0.1827	0.8421	1.9394	192	102	294	51178	48762	43216	43608	186764	0.27	0.25	0.23	0.25	0	0.48	0.8725	0.2823	0.7689	1.9532	110	646694	698445	454161	461913	2261213	0.27	0.3	0.22	0.22	0	0.43	0.9025	0.1733	0.8512	1.9545	27	31	58	779	973	1103	1365	4220	0.18	0.23	0.26	0.32	0.58	0.8674	0.2306	0.8006	1.9642	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14799	19136	4978	9693	13014	20078	13282	9881	12934	14278	9919	18638	11692	6339	9067	11236	11147	15582	11948	10966	23018	7532	13120	11208	21915	12417	5590	10082	6681	13901	11160	10185	9023	6257	12732	12695	10926	15616	7972	18055	14811	7751	17178	14588	11460	7590	11999	15240	8860	8680	4770	8011	6435	13990	12957	15151	2628	8473	8597	4021	11784	3696	9270	4898
GCF_030028045.1	NC_080190	NC_080190.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 5; mHipAmp2.hap2; whole genome shotgun sequence.	51126507	51043280	36197171	36368937	1400	174737295	0.29	0.29	0.21	0.21	0.42	0.9501	0.0032	0.9968	1.9792	662	728	1390	20566390	23149751	15132678	16032255	0	74881074	0.26	0.28	0.23	0.24	0.47	0.92	0.1189	0.8916	1.966	57213	521	563	1084	483995	404916	490054	506154	1885119	0.27	0.22	0.25	0.26	0.51	0.8629	0.301	0.7572	1.9347	1	15962028	18170720	11497061	12204468	0	57834277	0.25	0.3	0.22	0.23	0	0.45	0.8967	0.1873	0.8386	1.9377	103	98	201	51396	50798	43936	45153	191283	0.28	0.24	0.24	0.25	0	0.49	0.8727	0.2826	0.772	1.9505	0	647125	695262	479494	490628	2312509	0.27	0.29	0.22	0.22	0	0.44	0.9062	0.1612	0.8604	1.9653	13	16	29	383	508	566	675	2132	0.18	0.24	0.26	0.32	0.58	0.8617	0.2399	0.7966	1.9636	0	24	24	529	600	791	936	2856	0.19	0.21	0.28	0.33	0	0.6	0.8749	0.1469	0.8634	1.9639	13142	16513	4457	7952	11325	17394	11405	8326	11034	12595	8522	15453	9786	5533	7898	9520	9139	14231	10311	9352	20605	6085	11366	9156	19386	10436	4988	8936	5602	12555	9682	8911	7627	5398	10963	11305	9775	13314	6847	15556	12833	6499	14803	13162	10153	6388	10710	13347	7634	7516	4166	7315	5455	12113	10990	13136	2725	7504	7452	3297	9546	3674	8338	4138
GCF_030028045.1	NC_080191	NC_080191.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 6; mHipAmp2.hap2; whole genome shotgun sequence.	51661791	52003368	34084970	34211316	2400	171963845	0.3	0.3	0.2	0.2	0.4	0.9483	0.0051	0.9949	1.9693	608	566	1174	19604613	21780950	13108727	13836055	0	68330345	0.27	0.29	0.21	0.22	0.44	0.9192	0.1227	0.8885	1.9632	15413	455	449	904	429793	359789	384370	401360	1575312	0.29	0.24	0.23	0.25	0.48	0.865	0.306	0.7541	1.9382	42	15306842	17183674	10109279	10684779	0	53284574	0.28	0.32	0.19	0.21	0	0.4	0.9014	0.1738	0.8486	1.9363	113	84	197	38044	35146	30681	31527	135398	0.28	0.24	0.23	0.24	0	0.47	0.8717	0.2656	0.7809	1.9523	0	644696	661661	425350	432359	2164066	0.28	0.3	0.21	0.22	0	0.42	0.9063	0.1618	0.8594	1.9579	26	16	42	538	745	807	986	3076	0.17	0.24	0.26	0.32	0.58	0.8615	0.2649	0.7776	1.9601	0	1	1	35	38	38	42	153	0.23	0.25	0.25	0.27	0	0.52	0.887	0.0911	0.9129	1.997	11638	14325	4208	7202	9295	13335	9055	8521	8519	10192	8409	14749	8832	3961	7197	8495	8282	10721	9104	9373	15736	5172	8968	8769	15682	8182	4472	8404	5811	10544	8135	8183	6067	5457	9404	8880	7706	9530	5678	10770	9924	4435	14752	9137	7929	6128	7530	11794	6771	6812	3088	4956	5535	9197	8290	10481	2612	5040	5338	2522	9109	3606	7391	3201
GCF_030028045.1	NC_080192	NC_080192.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 7; mHipAmp2.hap2; whole genome shotgun sequence.	43726585	43666971	30879817	30940813	4000	149218186	0.29	0.29	0.21	0.21	0.41	0.9466	0.0017	0.9983	1.9787	668	677	1345	16523298	18593851	12331054	13065974	0	60514177	0.26	0.28	0.23	0.24	0.46	0.9214	0.1199	0.891	1.9697	78999	530	561	1091	472023	396016	468806	483078	1819923	0.27	0.23	0.24	0.26	0.5	0.8624	0.3044	0.755	1.9354	0	12758366	14539822	9353883	9944790	0	46596861	0.25	0.3	0.22	0.23	0	0.45	0.8949	0.1965	0.8314	1.9369	90	84	174	43261	42392	38693	38605	162951	0.27	0.24	0.24	0.25	0	0.49	0.873	0.2676	0.7809	1.9501	0	453616	475285	322475	323654	1575030	0.26	0.29	0.22	0.22	0	0.45	0.9033	0.1783	0.8467	1.9585	28	20	48	615	824	954	1103	3496	0.18	0.24	0.27	0.32	0.59	0.869	0.2334	0.8003	1.9622	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12717	16710	4382	7795	10909	16940	10907	8119	10433	11943	8516	15483	9541	5112	7717	9394	9124	13028	10418	9358	19473	5966	10974	9710	18397	10222	4900	8751	5659	12069	9172	8859	7188	5370	10107	11058	8991	12765	6807	14716	12295	6306	14375	12332	9830	6384	9562	12548	7322	7605	4025	6545	5520	11269	10229	12241	2568	7042	6936	3257	9776	3538	8264	3980
GCF_030028045.1	NC_080193	NC_080193.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 8; mHipAmp2.hap2; whole genome shotgun sequence.	43043168	43004420	30545519	30790150	800	147384057	0.29	0.29	0.21	0.21	0.42	0.9478	0.0044	0.9956	1.9796	647	700	1347	18346507	20625289	13564547	14289955	200	66826498	0.25	0.27	0.23	0.24	0.48	0.9191	0.1192	0.8915	1.9655	19351	520	566	1086	544074	447855	555224	567224	2114377	0.27	0.22	0.25	0.27	0.52	0.8631	0.3068	0.7533	1.9347	0	14392623	16333852	10393869	10965481	200	52086025	0.25	0.3	0.22	0.23	0	0.45	0.8936	0.1932	0.8344	1.9343	82	91	173	25681	24663	24252	24342	98938	0.27	0.24	0.24	0.25	0	0.48	0.8721	0.2564	0.7884	1.9537	0	640608	689176	446725	462056	2238565	0.27	0.29	0.22	0.22	0	0.44	0.9076	0.1507	0.8677	1.9573	22	24	46	589	797	896	1066	3348	0.18	0.24	0.27	0.32	0.59	0.8621	0.2472	0.7872	1.9618	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15367	20598	4783	8648	12911	20125	12470	8808	12302	13993	9284	16659	11605	6298	8817	10725	9963	15907	11684	9740	23599	7011	13055	10368	21969	12109	5657	10275	5958	13781	10906	9570	8530	5911	12147	12684	11036	15361	7780	17593	14499	7622	16266	14121	11247	6833	11367	14199	7991	8365	4725	7811	5997	13420	12505	15127	3046	8630	8890	3883	11072	3944	9101	4783
GCF_030028045.1	NC_080194	NC_080194.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 9; mHipAmp2.hap2; whole genome shotgun sequence.	41481787	41583150	30507934	30566381	1400	144140652	0.29	0.29	0.21	0.21	0.42	0.9476	0.0022	0.9978	1.9831	1056	1000	2056	18369152	20672674	14733609	15482608	400	69258443	0.24	0.27	0.25	0.25	0.49	0.9144	0.1562	0.8618	1.9711	41125	893	856	1749	648192	588765	759619	734732	2731308	0.25	0.21	0.27	0.27	0.54	0.8621	0.3047	0.7542	1.9352	0	14558288	16570177	11292254	11948660	400	54369779	0.23	0.27	0.24	0.25	0	0.49	0.8883	0.2224	0.8129	1.9395	88	95	183	44684	43124	39824	40388	168020	0.27	0.24	0.24	0.25	0	0.49	0.8701	0.27	0.7787	1.9497	0	360434	391366	286145	290439	1328384	0.26	0.28	0.23	0.23	0	0.46	0.8999	0.183	0.8436	1.9612	46	21	67	815	1161	1312	1601	4889	0.17	0.24	0.27	0.33	0.6	0.8713	0.2752	0.7688	1.9535	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	19784	21816	5829	11545	16317	26017	17561	11205	18213	18421	10096	18123	13988	7552	10295	12976	13852	22082	17211	12527	33950	8550	20224	11767	28534	17411	7112	12351	7643	17203	16605	12982	12347	6418	14882	16071	15286	22285	10291	25613	19251	10378	16169	19456	15554	8374	16306	16269	11324	10832	5609	9887	6231	18537	16038	19723	2880	11678	10722	5146	12643	3582	10748	6053
GCF_030028045.1	NC_080195	NC_080195.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 10; mHipAmp2.hap2; whole genome shotgun sequence.	35400530	35108109	23638202	23612605	600	117760046	0.3	0.3	0.2	0.2	0.4	0.9442	0.0047	0.9953	1.9717	361	410	771	11262615	12520459	7991896	8419218	0	40194188	0.27	0.29	0.22	0.23	0.44	0.9206	0.1256	0.8861	1.9682	48657	295	320	615	269559	225564	256093	264752	1015968	0.27	0.23	0.24	0.26	0.5	0.8632	0.3098	0.7518	1.9339	0	8465431	9507533	5886739	6187468	0	30047171	0.26	0.3	0.21	0.23	0	0.44	0.9005	0.1766	0.8463	1.9401	52	66	118	27861	26489	20908	22423	97681	0.29	0.25	0.22	0.24	0	0.46	0.8715	0.2638	0.7824	1.9504	0	384896	408255	243525	248864	1285540	0.28	0.3	0.21	0.21	0	0.42	0.9035	0.1622	0.8598	1.9543	5	6	11	136	199	212	260	807	0.17	0.25	0.26	0.32	0.58	0.8713	0.2934	0.7535	1.9582	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7103	9145	2466	4534	6013	8973	5730	4786	5862	6697	4878	8729	5748	3059	4466	5228	5333	6858	5761	5540	10558	3184	6075	5089	9934	5575	2793	4842	3312	6983	5148	5075	4143	3263	6014	5740	5013	6430	3844	7396	6827	3236	8822	6167	5664	3621	5159	7480	4596	4174	2237	3560	3322	6027	5894	6882	1682	3744	3913	1884	5535	2285	4865	2134
GCF_030028045.1	NC_080196	NC_080196.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 11; mHipAmp2.hap2; whole genome shotgun sequence.	33784918	33928123	23795011	23826440	800	115335292	0.29	0.29	0.21	0.21	0.41	0.9493	0.0028	0.9972	1.978	688	699	1387	12839885	14414295	9666076	10219122	0	47139378	0.25	0.27	0.23	0.25	0.48	0.914	0.1396	0.8754	1.9734	8757	501	462	963	375951	321651	402154	405442	1505198	0.26	0.22	0.25	0.27	0.52	0.8632	0.3064	0.7534	1.9381	0	9834848	11231626	7256228	7704424	0	36027126	0.25	0.29	0.22	0.23	0	0.45	0.8946	0.2154	0.8186	1.9454	86	78	164	44607	41987	37065	38303	161962	0.28	0.24	0.23	0.25	0	0.48	0.8757	0.2616	0.7855	1.9565	0	407446	431238	293517	301304	1433505	0.27	0.29	0.22	0.22	0	0.44	0.9012	0.1646	0.8585	1.9563	77	143	220	3236	3661	4187	5204	16288	0.2	0.23	0.26	0.32	0.58	0.8834	0.2006	0.8262	1.9687	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10658	13713	3472	6539	8723	14610	9402	6117	9540	9813	6318	11457	8025	4528	6220	7778	7805	11536	8786	7107	17177	4953	9877	7283	15291	9429	3912	6827	4217	9664	8344	7009	6537	3883	8642	9146	7765	11248	5446	12882	10621	5260	10468	10532	7874	4922	8917	9827	6030	5787	3391	5538	3945	9860	9280	10434	1675	6134	6033	2642	7028	2284	6093	3277
GCF_030028045.1	NC_080197	NC_080197.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 12; mHipAmp2.hap2; whole genome shotgun sequence.	29788577	29640869	22407216	22414216	1600	104252478	0.29	0.28	0.21	0.21	0.43	0.9498	0.0026	0.9974	1.9858	761	725	1486	12902097	14510807	10304996	10875373	200	48593473	0.25	0.27	0.24	0.24	0.48	0.9179	0.1278	0.8843	1.9735	17227	609	628	1237	446616	388733	517055	512955	1865359	0.25	0.21	0.26	0.27	0.53	0.8619	0.3124	0.749	1.9358	0	9489916	10776648	7392426	7838284	0	35497274	0.24	0.28	0.23	0.25	0	0.49	0.89	0.22	0.8145	1.9429	109	69	178	36002	34161	32273	32909	135345	0.27	0.23	0.24	0.26	0	0.5	0.8728	0.2826	0.7688	1.9531	0	280217	293594	226189	230956	1030956	0.25	0.28	0.23	0.24	0	0.47	0.9023	0.1807	0.8459	1.9656	17	11	28	370	503	538	640	2051	0.18	0.25	0.26	0.31	0.57	0.8636	0.2408	0.7936	1.9668	0	1	1	23	27	32	37	119	0.19	0.23	0.27	0.31	0	0.58	0.8809	0.1525	0.8584	1.9774	12861	16541	3878	7763	11058	19027	11891	7020	11874	12699	6684	12346	9556	5673	6959	9626	9128	14616	10949	8273	23012	6095	13115	8241	19545	11875	4733	7890	5011	12047	10530	8156	8025	4128	9929	11826	9818	15379	6999	17777	13883	7105	11053	14198	10830	5437	11408	11295	7289	6756	4307	7447	3972	12486	11332	13346	1981	8206	7759	3410	8654	2378	7630	3989
GCF_030028045.1	NC_080198	NC_080198.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 13; mHipAmp2.hap2; whole genome shotgun sequence.	30342331	30326546	21543152	21590665	2600	103805294	0.29	0.29	0.21	0.21	0.42	0.9496	0.0014	0.9986	1.9793	468	440	908	12082681	13708495	9486603	10053563	0	45331342	0.25	0.27	0.23	0.25	0.48	0.92	0.1222	0.8893	1.9678	216837	404	361	765	345673	290971	383798	392401	1412843	0.25	0.21	0.26	0.28	0.53	0.8625	0.3031	0.7559	1.934	0	9162162	10540783	7137885	7586085	0	34426915	0.23	0.28	0.24	0.25	0	0.49	0.8909	0.2037	0.8267	1.9394	44	60	104	19795	18182	16970	17357	72304	0.28	0.24	0.23	0.25	0	0.48	0.8703	0.2688	0.7782	1.9473	0	277285	286322	196127	197631	957365	0.27	0.29	0.22	0.22	0	0.44	0.9023	0.1712	0.8522	1.9546	6	8	14	184	232	286	320	1022	0.18	0.23	0.28	0.31	0.59	0.8652	0.1993	0.8236	1.9649	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9266	12599	2946	5618	8576	14576	8579	5117	8441	9505	5337	10437	7124	4334	5578	7232	6567	11742	8099	6001	17041	4663	9072	6491	15401	8460	3418	5918	3546	9139	7567	6324	6062	3195	7596	9273	7643	10679	5280	13143	10082	5672	9348	10809	7989	4261	8587	8902	5488	5477	3408	5678	3255	9078	8508	9822	1680	6313	5939	2915	6868	2005	5784	3214
GCF_030028045.1	NC_080199	NC_080199.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 14; mHipAmp2.hap2; whole genome shotgun sequence.	24556325	24366726	15881079	15858365	1200	80663695	0.3	0.3	0.2	0.2	0.39	0.9466	0.0046	0.9954	1.967	231	226	457	8329973	9343172	5771334	6142531	0	29587010	0.26	0.29	0.22	0.23	0.45	0.9219	0.1228	0.8883	1.9651	23165	186	169	355	184445	153133	168366	176367	682311	0.28	0.23	0.23	0.25	0.48	0.8657	0.3014	0.7567	1.9357	0	6902208	7797763	4696736	5004126	0	24400833	0.27	0.31	0.2	0.22	0	0.42	0.903	0.1764	0.8457	1.9405	34	40	74	24182	25968	20866	21216	92232	0.27	0.25	0.23	0.25	0	0.48	0.8738	0.263	0.784	1.9491	0	374887	403855	242320	249679	1270741	0.28	0.3	0.21	0.22	0	0.43	0.9045	0.161	0.8616	1.9521	9	8	17	208	313	323	392	1236	0.17	0.25	0.26	0.32	0.58	0.8684	0.2993	0.7513	1.9595	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4611	6522	1757	2781	3710	6096	3629	3670	3767	3994	3559	6111	3714	2010	3037	3804	3376	4854	4010	3951	6746	2128	3776	3730	6721	3433	1867	3455	2359	4297	3600	3670	2804	2449	4035	4077	3391	4234	2719	4893	4415	2155	6545	4270	3458	2744	3367	4919	2841	2825	1583	2691	2369	3780	3738	4119	1082	2474	2840	1189	3625	1595	2993	1406
GCF_030028045.1	NC_080200	NC_080200.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 15; mHipAmp2.hap2; whole genome shotgun sequence.	19427949	19515653	15362594	15385474	6000	69697670	0.28	0.28	0.22	0.22	0.44	0.9461	0.003	0.997	1.99	732	747	1479	6112681	6880319	5673918	5885617	600	24553135	0.22	0.25	0.27	0.26	0.53	0.9081	0.156	0.8618	1.9649	6585	519	534	1053	340284	319664	453156	427353	1540457	0.23	0.2	0.29	0.29	0.57	0.8586	0.3142	0.7491	1.9216	0	4163703	4790014	3712354	3885962	600	16552633	0.2	0.24	0.27	0.28	0	0.56	0.8775	0.2446	0.7971	1.922	33	42	75	19383	16966	16029	16170	68548	0.27	0.23	0.24	0.26	0	0.5	0.8658	0.2952	0.7624	1.9365	0	184379	198870	135252	136132	654633	0.26	0.28	0.23	0.23	0	0.46	0.8992	0.1675	0.8538	1.949	19	21	40	516	688	790	939	2933	0.18	0.23	0.27	0.32	0.59	0.8691	0.248	0.7888	1.9597	140	132	272	111405	103625	187721	208605	611356	0.2	0.2	0.29	0.32	0	0.61	0.9098	0.0801	0.9234	1.9559	11753	11768	2758	6277	8831	14060	9700	4973	10972	10363	4263	8452	8064	5286	5110	7414	7260	13122	10188	6818	20267	5049	11810	5513	14626	11078	3480	5536	4116	9598	10227	6664	7200	3173	7860	9921	9333	14138	6582	16561	11071	7571	7116	12550	9016	4101	10239	7904	6507	5478	3789	7591	2697	9881	9356	10413	1110	7901	7730	3002	5909	1551	5165	3514
GCF_030028045.1	NC_080201	NC_080201.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 16; mHipAmp2.hap2; whole genome shotgun sequence.	17619304	17553604	14757520	14732958	1400	64664786	0.27	0.27	0.23	0.23	0.46	0.9514	0.0027	0.9973	1.9944	644	654	1298	7120000	8024647	6607327	6919300	0	28671274	0.23	0.25	0.25	0.27	0.52	0.916	0.1261	0.8859	1.9737	83947	548	557	1105	377151	326869	502687	490542	1697249	0.23	0.2	0.29	0.29	0.58	0.859	0.3056	0.7545	1.9282	4	4942484	5688487	4467367	4716756	0	19815094	0.21	0.25	0.26	0.28	0	0.54	0.8799	0.2654	0.783	1.9349	53	56	109	35986	35443	30766	31813	134008	0.27	0.24	0.24	0.26	0	0.5	0.8739	0.2488	0.7933	1.9544	0	220384	233413	192016	198726	844539	0.26	0.27	0.23	0.24	0	0.47	0.9021	0.1701	0.8538	1.9625	14	18	32	398	559	634	770	2361	0.17	0.24	0.27	0.33	0.59	0.8703	0.2663	0.7735	1.9569	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10676	12801	3309	6238	10217	18064	11256	4201	11212	12308	5241	9551	8456	5797	6101	8359	7725	14758	9556	5274	21738	5522	11754	6264	17600	11332	3457	5955	3019	10783	8804	6459	7371	3504	8938	10658	9733	17617	5715	18170	12770	8341	7339	14689	10488	3936	12223	10703	5810	5649	4275	8560	3238	13420	11718	12826	1529	9203	9097	3418	6423	1619	6591	3804
GCF_030028045.1	NC_080202	NC_080202.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome 17; mHipAmp2.hap2; whole genome shotgun sequence.	17409745	17313098	14891903	14932194	1200	64548140	0.27	0.27	0.23	0.23	0.46	0.9516	0.0041	0.9959	1.9958	730	722	1452	9183490	10382115	8308964	8737660	200	36612429	0.23	0.25	0.25	0.26	0.52	0.9159	0.1286	0.884	1.9738	88801	589	577	1166	447729	379379	560614	552559	1940281	0.24	0.2	0.27	0.28	0.56	0.8612	0.307	0.7528	1.9342	0	6675899	7728901	5845873	6199590	0	26450263	0.22	0.26	0.25	0.27	0	0.52	0.8835	0.2339	0.8038	1.9394	91	79	170	30261	30332	29178	29481	119252	0.26	0.24	0.24	0.26	0	0.5	0.8705	0.2806	0.7711	1.954	0	225575	244963	200097	206416	877051	0.26	0.28	0.22	0.24	0	0.46	0.9006	0.1846	0.8417	1.9626	33	37	70	924	1192	1351	1661	5128	0.18	0.23	0.26	0.32	0.59	0.8762	0.241	0.7923	1.961	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12315	16613	3435	7175	11691	21981	12804	5517	12928	13472	5643	12475	9182	5949	6671	9612	8726	15508	10956	6640	25382	6232	13833	7847	21904	13121	4375	6976	4120	12584	10786	7841	8576	3329	9563	13269	10808	17811	7276	19879	14990	8618	9883	16016	12263	5001	12964	11362	7112	7013	4613	8061	3202	13361	11961	14326	1833	9685	9038	3743	8632	2228	8032	4690
GCF_030028045.1	NC_080203	NC_080203.1	Hippopotamus amphibius kiboko isolate mHipAmp2 chromosome X; mHipAmp2.hap2; whole genome shotgun sequence.	41425551	41476884	27318129	27357913	2600	137581077	0.3	0.3	0.2	0.2	0.4	0.9433	0.0013	0.9987	1.9694	516	571	1087	11737119	13169220	8285641	8600325	0	41792305	0.26	0.27	0.23	0.24	0.47	0.9132	0.1433	0.8725	1.9671	66904	406	456	862	346558	287534	335965	349435	1319492	0.27	0.23	0.24	0.26	0.5	0.8652	0.3067	0.7535	1.9417	0	8635906	9811754	5916894	6148918	0	30513472	0.26	0.3	0.21	0.23	0	0.44	0.8931	0.2089	0.8238	1.939	67	74	141	26763	26712	22138	23585	99198	0.28	0.25	0.23	0.24	0	0.47	0.8733	0.2689	0.78	1.9512	0	457019	506830	316464	324830	1605143	0.26	0.31	0.21	0.23	0	0.43	0.9082	0.1774	0.8455	1.96	20	16	36	447	640	708	830	2625	0.17	0.24	0.27	0.32	0.59	0.8592	0.2587	0.7796	1.9619	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10208	12550	3264	5829	7926	13556	8079	6106	7470	8314	6487	11598	7016	3000	5494	6742	6801	9680	7429	6573	14449	4708	7820	7515	14168	7444	3808	6449	4372	8774	6946	6331	5397	3979	7104	7632	6317	8941	4887	10931	8580	3894	10555	8695	6567	4422	7321	8683	4990	5405	2335	3951	3754	8564	7830	9538	1770	4260	4569	2271	7371	2248	5596	2796
NA	NC_000889	NC_000889.1	Hippopotamus amphibius mitochondrion; complete genome.	5372	4052	4694	2289	0	16407	0.33	0.25	0.29	0.14	0.43	0.9296	0.4845	0.621	1.9386	12	1	13	3479	2968	3356	1575	0	11378	0.3	0.27	0.29	0.14	0.43	0.8872	0.5737	0.5881	1.9042	54	6	1	7	1342	1207	1259	686	4494	0.3	0.28	0.27	0.15	0.42	0.8768	0.6244	0.5574	1.8895	46	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	3	9	197	177	135	118	627	0.31	0.28	0.21	0.19	0.4	0.8744	0.3449	0.7227	1.9279	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26	8	36	15	42	12	12	38	32	2	9	32	33	10	7	44	9	12	48	37	27	22	35	12	4	36	121	14	27	28	89	18	23	59	63	20	27	37	26	32	14	3	28	23	7	23	16	1	5	5	7	6	32	8	0	37	2	0	3	3	32	4	34	21