GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_007474595.2	NC_044303	NC_044303.2	Lynx canadensis isolate LIC74 chromosome A1; mLynCan4.pri.v2; whole genome shotgun sequence.	71908935	72257776	47916585	47922856	6508	240012660	0.3	0.3	0.2	0.2	0	0.4	0.9471	0.0025	0.9975	1.9705	855	858	1713	24702062	27129019	17494298	18410397	1386	87737162	0.27	0.29	0.22	0.23	0.44	0.9214	0.1157	0.8949	1.9703	24227	599	564	1163	551613	464998	506106	522029	2044746	0.28	0.23	0.23	0.25	0.48	0.8655	0.3063	0.7535	1.9394	0	17003418	18925425	11903241	12549484	1087	60382655	0.27	0.31	0.21	0.22	0.42	0.9009	0.1699	0.8519	1.9462	177	215	392	93429	88385	76726	79727	338267	0.29	0.26	0.22	0.24	0.46	0.8621	0.3528	0.7305	1.891	0	1365857	1428447	961510	993295	98	4749207	0.28	0.29	0.21	0.22	0.43	0.9084	0.146	0.8719	1.9597	13	18	31	366	595	630	795	2386	0.16	0.25	0.26	0.33	0	0.59	0.8714	0.3642	0.7102	1.937	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15053	18719	5518	9366	11708	17792	11257	10527	11752	12822	10866	17842	11269	5058	9059	11237	10612	15256	12382	11536	20796	6467	11919	11254	19805	11278	6153	10559	7245	13066	11272	10299	8369	7103	12401	12404	9984	12467	7946	14615	12920	5518	18123	12196	10155	7660	9733	14908	8846	8728	4365	6567	6760	12179	11311	13862	3238	6545	6813	3342	11189	4566	9765	4063
GCF_007474595.2	NC_044304	NC_044304.2	Lynx canadensis isolate LIC74 chromosome A2; mLynCan4.pri.v2; whole genome shotgun sequence.	48702496	48673856	35625107	35651756	335128	168988343	0.29	0.29	0.21	0.21	0	0.42	0.9523	0.0007	0.9993	1.9816	1009	1031	2040	23548591	25897551	18502260	19385237	2195	87335834	0.24	0.26	0.25	0.25	0.5	0.9189	0.1175	0.8935	1.9708	41032	719	770	1489	588542	510958	704389	697734	2501623	0.25	0.21	0.27	0.28	0.54	0.8612	0.309	0.7521	1.9314	0	16134250	17992012	12465487	13148951	1401	59742101	0.22	0.26	0.25	0.26	0.51	0.8876	0.2144	0.8199	1.9372	193	169	362	92426	88807	90814	91883	363930	0.27	0.24	0.24	0.26	0.49	0.865	0.3412	0.7424	1.9085	0	914795	942270	674620	688096	0	3219781	0.26	0.28	0.23	0.24	0.46	0.9025	0.1618	0.8606	1.9637	24	21	45	565	832	864	1140	3401	0.17	0.24	0.25	0.33	0	0.59	0.8731	0.3448	0.7276	1.9422	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16659	20769	4981	10129	14976	23962	15976	8594	15859	17821	8771	16947	12588	8257	9287	12246	11420	20304	14313	10418	30288	8403	16418	10772	25356	16304	6021	9991	6422	16247	13387	10805	10997	5330	13663	15817	13969	21374	9505	24893	18093	10425	14215	19907	14707	7060	15859	14986	9867	9375	6242	10962	5031	16930	15122	17987	2469	12164	12014	5264	11416	3174	10006	6061
GCF_007474595.2	NC_044305	NC_044305.1	Lynx canadensis isolate LIC74 chromosome A3; mLynCan4.pri.v2; whole genome shotgun sequence.	39818241	39855332	30006266	30051494	99835	139831168	0.28	0.29	0.21	0.21	0	0.43	0.9519	0.0012	0.9988	1.9853	718	757	1475	16195202	17912209	12762499	13446194	784	60316888	0.25	0.27	0.23	0.24	0.48	0.9222	0.1083	0.9009	1.9754	31341	501	559	1060	423690	354762	445863	456680	1680995	0.26	0.22	0.25	0.27	0.52	0.8626	0.3083	0.7526	1.9373	0	11128074	12458001	8714903	9216016	593	41517587	0.24	0.28	0.23	0.24	0.47	0.8962	0.1915	0.8359	1.9507	167	143	310	77405	76472	77313	76555	307745	0.27	0.23	0.24	0.25	0.5	0.8625	0.3368	0.7462	1.9152	3	1031144	1086473	770230	787224	100	3675171	0.26	0.27	0.23	0.24	0.47	0.9037	0.1582	0.8624	1.9687	6	15	21	233	421	440	563	1657	0.15	0.25	0.26	0.34	0	0.6	0.867	0.4049	0.6837	1.9285	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11443	15356	3689	7043	10158	16309	10362	6653	9922	11535	6988	13380	8607	4897	6955	8581	8154	12561	9307	7755	18582	5543	10558	8463	17103	9915	4422	7601	4705	11292	8666	7961	6844	4389	9117	10563	8553	12468	6135	14720	11946	6164	11889	11941	9417	5481	9371	11348	6738	6721	3903	6330	4301	10747	10012	11804	2119	7007	6958	3066	8566	2860	7467	3911
GCF_007474595.2	NC_044306	NC_044306.2	Lynx canadensis isolate LIC74 chromosome B1; mLynCan4.pri.v2; whole genome shotgun sequence.	62621996	62609671	40295386	40330431	76982	205934466	0.3	0.3	0.2	0.2	0	0.39	0.9485	0.0005	0.9995	1.9657	649	646	1295	20862444	22843171	14185550	14906665	1391	72799221	0.28	0.29	0.21	0.22	0.43	0.9219	0.1091	0.9007	1.9649	5515	450	461	911	433007	360549	376188	395151	1564895	0.29	0.24	0.23	0.25	0.47	0.8651	0.306	0.754	1.9398	0	15355043	16964202	10361274	10888615	992	53570126	0.28	0.31	0.2	0.21	0.41	0.9024	0.1581	0.861	1.9412	153	139	292	59672	56801	51969	52268	220710	0.28	0.25	0.22	0.25	0.46	0.8627	0.3439	0.7429	1.901	0	730035	752532	489548	498168	99	2470382	0.28	0.3	0.21	0.22	0.42	0.9035	0.1623	0.8595	1.9531	7	10	17	207	368	347	439	1361	0.15	0.27	0.25	0.32	0	0.58	0.8648	0.3981	0.6869	1.9408	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11542	14568	4408	7392	8979	13763	8633	8387	8565	10056	8791	14512	8679	3744	7259	8601	8446	10761	8822	9239	15210	5019	8870	8879	14966	8305	4717	8365	5856	10412	8035	8393	6015	5723	9634	9145	7556	8805	5796	10437	9768	3748	14790	8654	7866	6106	7198	11770	7145	7212	3090	4427	5557	8950	8336	10462	2685	4822	4747	2545	9336	3770	7517	3198
GCF_007474595.2	NC_044307	NC_044307.1	Lynx canadensis isolate LIC74 chromosome B2; mLynCan4.pri.v2; whole genome shotgun sequence.	45500597	45475736	30691035	30702244	383573	152753185	0.3	0.3	0.2	0.2	0	0.4	0.949	0.0005	0.9995	1.9713	799	794	1593	17487209	19140132	12348400	12968044	1783	61945568	0.26	0.27	0.23	0.24	0.47	0.9162	0.1287	0.8844	1.9716	209767	507	515	1022	415898	353972	412221	423236	1605327	0.27	0.23	0.24	0.26	0.5	0.8637	0.3091	0.7521	1.9389	0	12774774	14163173	8824801	9306712	1490	45070950	0.26	0.3	0.21	0.23	0.44	0.897	0.1964	0.8333	1.9475	158	158	316	69285	65803	60637	61238	256963	0.28	0.25	0.23	0.24	0.47	0.8662	0.3559	0.7363	1.9028	0	776807	809003	552349	561771	0	2699930	0.27	0.29	0.22	0.22	0.44	0.9057	0.1691	0.8555	1.9618	91	83	174	2457	2970	3418	4267	13112	0.19	0.23	0.26	0.33	0	0.58	0.8809	0.2438	0.7916	1.9598	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11764	15437	3874	7055	8980	14749	9557	7401	9822	10655	7202	13079	8670	4334	6919	8370	8423	11638	9419	8387	17610	5321	10077	7799	16181	9397	4493	8050	5112	10682	8723	7852	6607	4799	9255	9158	7967	11271	5913	12620	10689	4902	12514	10373	8097	5554	9162	11239	6830	6383	3421	5266	4578	10127	9445	10958	2418	5763	5696	2601	8371	3102	7183	3341
GCF_007474595.2	NC_044308	NC_044308.2	Lynx canadensis isolate LIC74 chromosome B3; mLynCan4.pri.v2; whole genome shotgun sequence.	42449529	42813525	30697273	30828506	486868	147275701	0.29	0.29	0.21	0.21	0	0.42	0.9501	0.0064	0.9936	1.9793	933	835	1768	17925938	19879535	13629540	14367358	83361	65885732	0.26	0.28	0.23	0.24	0.47	0.9162	0.1308	0.8832	1.9709	25470	594	593	1187	527690	449845	537412	550112	2065059	0.27	0.23	0.24	0.26	0.5	0.8636	0.3116	0.7504	1.9382	0	13249716	14879933	9825061	10379462	82968	48417140	0.25	0.29	0.22	0.23	0.45	0.8956	0.1895	0.8373	1.9467	274	164	438	91655	88619	83339	84899	348512	0.28	0.24	0.23	0.25	0.47	0.8647	0.3119	0.7561	1.919	1	739017	765329	580967	596504	98	2681915	0.26	0.28	0.22	0.24	0.46	0.9033	0.1639	0.8591	1.961	25	27	52	632	990	1026	1325	3973	0.16	0.25	0.26	0.33	0	0.59	0.878	0.3537	0.7147	1.9433	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14598	18435	5050	9149	12352	20305	12558	8896	12305	13550	9154	17436	10946	5407	8812	10150	10854	15547	11825	10280	22689	6649	12922	11024	21135	11859	5814	10000	6370	13237	10759	10026	8476	5656	11526	12823	10488	14576	7379	17250	14063	6588	15220	13674	11033	7033	11301	14025	8668	8531	4356	6897	5875	13393	11809	14584	2659	8042	7548	3621	10747	3530	8978	4522
GCF_007474595.2	NC_044309	NC_044309.1	Lynx canadensis isolate LIC74 chromosome B4; mLynCan4.pri.v2; whole genome shotgun sequence.	41332237	41411566	29242451	29245862	79520	141311636	0.29	0.29	0.21	0.21	0	0.41	0.949	0.001	0.999	1.9783	786	805	1591	17968216	19790829	13287898	13973372	1400	65021715	0.26	0.28	0.23	0.23	0.46	0.9207	0.1162	0.8947	1.9712	57455	570	582	1152	486639	419526	491014	495218	1892397	0.27	0.23	0.24	0.26	0.5	0.8637	0.3098	0.7511	1.9401	0	11999829	13440437	8747820	9246830	1300	43436216	0.25	0.29	0.22	0.23	0.46	0.8942	0.1993	0.8305	1.9446	160	162	322	76984	73236	68020	68036	286276	0.28	0.24	0.24	0.24	0.48	0.8652	0.3253	0.7521	1.9157	0	872532	898918	624571	637638	0	3033659	0.27	0.28	0.22	0.23	0.45	0.9031	0.1697	0.855	1.958	14	7	21	241	434	432	554	1661	0.15	0.26	0.26	0.33	0	0.59	0.8731	0.4093	0.6782	1.9345	0	1	1	28	26	30	35	119	0.24	0.22	0.25	0.29	0	0.55	0.8987	0.114	0.8929	1.991	13936	16996	4697	8561	11158	17708	11407	8760	11232	12212	8794	15029	9914	4739	7787	10240	9826	14126	11251	9839	21930	6060	12355	9576	19620	10976	5651	9212	6359	12357	10581	9177	7889	5508	10622	11448	9320	13210	7329	15412	12439	5692	14087	12501	10006	6629	10150	12421	7890	7980	3867	5755	5305	11697	10063	13210	2612	6980	6295	3097	10460	3402	8135	4044
GCF_007474595.2	NC_044310	NC_044310.1	Lynx canadensis isolate LIC74 chromosome C1; mLynCan4.pri.v2; whole genome shotgun sequence.	64466312	64654831	45844903	45866661	121953	220954660	0.29	0.29	0.21	0.21	0	0.42	0.952	0.0017	0.9983	1.9789	1233	1162	2395	26909810	29570862	20052404	21036618	2074	97571768	0.26	0.27	0.23	0.24	0.47	0.9194	0.1123	0.8983	1.9692	19267	874	810	1684	773541	644512	778014	792557	2988624	0.27	0.22	0.25	0.26	0.51	0.8634	0.3101	0.7511	1.9364	0	19241050	21335182	14127861	14849905	1677	69555675	0.25	0.29	0.22	0.24	0.46	0.8939	0.1903	0.837	1.9414	262	261	523	117759	112319	105864	107553	443495	0.28	0.24	0.23	0.25	0.48	0.8635	0.3271	0.751	1.9173	0	1095419	1143480	787234	804414	0	3830547	0.27	0.28	0.22	0.23	0.45	0.9035	0.1601	0.8618	1.9617	34	29	63	778	1181	1233	1540	4732	0.17	0.25	0.26	0.32	0	0.58	0.874	0.3219	0.7377	1.9483	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21639	27697	7029	13034	17746	27744	17529	13037	17941	20124	13387	24217	16313	7964	12904	14973	15142	21631	16730	14024	32612	10358	18194	14815	30483	17536	8542	14439	9042	19887	15181	14041	11907	8720	17295	17640	15482	21319	11120	24239	20309	9484	23103	20157	16048	9865	16490	20473	11968	12347	6372	9687	8396	19278	17292	21960	4391	11497	11155	5315	16293	5754	13492	6515
GCF_007474595.2	NC_044311	NC_044311.2	Lynx canadensis isolate LIC74 chromosome C2; mLynCan4.pri.v2; whole genome shotgun sequence.	47568024	47956991	31544883	31628786	228690	158927374	0.3	0.3	0.2	0.2	0	0.4	0.9483	0.0054	0.9946	1.969	601	618	1219	17935639	19604729	12563562	13153082	1330	63258342	0.27	0.29	0.22	0.23	0.44	0.9198	0.1206	0.892	1.9667	41748	402	430	832	375211	318212	341528	351324	1386275	0.28	0.23	0.23	0.25	0.49	0.8647	0.3107	0.7508	1.9387	0	11663878	12874383	8169859	8548429	741	41257290	0.27	0.31	0.21	0.22	0.43	0.9009	0.1676	0.8538	1.9446	146	132	278	66809	62427	58295	59101	246632	0.28	0.25	0.23	0.24	0.47	0.8637	0.3362	0.7458	1.9204	0	909525	931995	608786	622292	198	3072796	0.27	0.29	0.21	0.22	0.44	0.9053	0.1478	0.8723	1.9616	9	14	23	267	476	450	592	1785	0.15	0.27	0.25	0.33	0	0.58	0.8599	0.4391	0.6652	1.9286	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10424	12224	3611	6397	8215	11913	7732	6998	8110	9270	7217	12432	7940	3391	6216	7475	7450	9614	8241	7902	14194	4284	8144	7255	13544	7691	4211	7275	5121	9269	7301	7254	5532	4772	8535	7616	6625	8357	5243	9447	8893	3433	12344	8090	7925	5186	6534	10336	6324	6040	2669	3786	4793	8287	7472	9437	2343	4310	4284	2262	8253	3095	6555	2690
GCF_007474595.2	NC_044312	NC_044312.2	Lynx canadensis isolate LIC74 chromosome D1; mLynCan4.pri.v2; whole genome shotgun sequence.	33007921	33304321	24581868	24701383	120422	115715915	0.29	0.29	0.21	0.21	0	0.43	0.9491	0.0069	0.9931	1.9837	919	873	1792	12997711	14286805	10605675	11109975	29322	49029488	0.24	0.27	0.25	0.24	0.49	0.9138	0.1541	0.8638	1.9708	12908	708	677	1385	478897	458227	566870	539472	2043466	0.25	0.22	0.27	0.27	0.54	0.8629	0.3065	0.7531	1.9368	0	9171499	10175079	7259239	7673746	497	34280060	0.23	0.27	0.25	0.26	0.51	0.8876	0.2167	0.8178	1.9393	137	128	265	60215	57872	56799	56493	231379	0.27	0.24	0.24	0.25	0.49	0.8643	0.3643	0.7289	1.9099	0	532472	553739	404828	413651	96	1904786	0.26	0.28	0.23	0.23	0.47	0.9021	0.1699	0.8549	1.9614	15	11	26	310	536	499	690	2035	0.16	0.26	0.24	0.34	0	0.58	0.8681	0.4295	0.6641	1.9356	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15688	16041	4594	9128	11646	18266	13061	9456	13952	13412	7715	12495	10117	5684	7597	9959	10561	16935	14042	10455	25193	6621	15432	9044	19572	13331	5707	9787	6686	12225	13433	9975	9773	5003	11080	12315	11059	16625	8276	19357	13373	7418	11667	14513	11713	6586	12261	11451	8996	8338	4173	6753	4666	13568	11230	14466	2176	8314	7683	3701	9072	2634	7747	4483
GCF_007474595.2	NC_044313	NC_044313.2	Lynx canadensis isolate LIC74 chromosome D2; mLynCan4.pri.v2; whole genome shotgun sequence.	24745465	24659297	18918230	18926108	3739	87252839	0.28	0.28	0.22	0.22	0	0.43	0.9519	0.002	0.9981	1.9873	400	414	814	11321026	12540305	8912796	9411657	293	42186077	0.25	0.27	0.23	0.24	0.47	0.9227	0.1113	0.8986	1.9746	44270	272	316	588	271026	226111	274906	280697	1052740	0.27	0.22	0.25	0.26	0.51	0.865	0.3053	0.7548	1.9387	0	8743627	9776046	6754375	7154598	195	32428841	0.25	0.29	0.22	0.24	0.46	0.901	0.1735	0.8493	1.9556	91	68	159	41343	40594	40288	40018	162243	0.27	0.25	0.24	0.24	0.48	0.8676	0.3382	0.7438	1.9124	0	308869	314843	241828	245539	0	1111079	0.26	0.28	0.23	0.23	0.46	0.905	0.1589	0.8623	1.9714	5	6	11	118	221	237	294	870	0.13	0.25	0.27	0.34	0	0.62	0.8408	0.4438	0.6673	1.9035	2	1	3	70	79	96	112	357	0.2	0.22	0.27	0.31	0	0.58	0.8827	0.1371	0.8719	1.9736	7306	9253	2462	4524	6174	9601	6365	4542	6175	7010	4680	8827	5578	3090	4355	5599	5258	7796	5935	4981	11273	3377	6492	5215	10309	6068	2972	5047	3058	7011	5526	4970	4308	2952	6212	6288	5283	7474	3901	8777	7056	3372	8256	7161	5707	3570	5905	7335	4329	4235	2369	3823	2908	6749	6080	7497	1519	4306	4235	1946	5529	1988	4767	2491
GCF_007474595.2	NC_044314	NC_044314.2	Lynx canadensis isolate LIC74 chromosome D3; mLynCan4.pri.v2; whole genome shotgun sequence.	26457231	26513756	20221208	20260813	93175	93546183	0.28	0.28	0.22	0.22	0	0.43	0.9505	0.002	0.998	1.9865	464	456	920	11233465	12406885	9217321	9671223	84739	42613633	0.25	0.27	0.23	0.24	0.48	0.9235	0.107	0.9021	1.9769	5760	330	310	640	283566	235531	307030	311211	1137338	0.26	0.22	0.25	0.27	0.52	0.8646	0.2994	0.7582	1.939	0	7377209	8324055	5962104	6303693	84639	28051700	0.24	0.28	0.23	0.25	0.48	0.899	0.1842	0.841	1.954	97	110	207	58578	54365	53458	52705	219106	0.28	0.23	0.23	0.26	0.49	0.8744	0.3413	0.7435	1.9028	0	472438	478101	358196	354391	0	1663126	0.26	0.27	0.23	0.23	0.46	0.9035	0.1646	0.8578	1.9654	10	15	25	300	489	490	644	1923	0.16	0.25	0.25	0.33	0	0.59	0.8737	0.3797	0.6927	1.9425	0	1	1	742	682	825	1039	3288	0.23	0.21	0.25	0.32	0	0.57	0.9238	0.1569	0.8566	1.9811	7767	10182	2463	4495	6870	11546	6835	4308	6807	7453	4513	8970	5871	3586	4645	5842	5390	8773	6243	4951	12581	3606	7078	5347	11781	6824	2852	5015	2911	7322	6170	5033	4744	2832	6240	7362	6065	8839	4081	9975	8215	4388	7665	8075	6273	3694	6371	7505	4626	4628	2763	4610	2774	7411	6717	7994	1348	5173	5331	2269	5628	1805	4857	2832
GCF_007474595.2	NC_044315	NC_044315.2	Lynx canadensis isolate LIC74 chromosome D4; mLynCan4.pri.v2; whole genome shotgun sequence.	26987938	26860299	20101255	20052253	3745	94005490	0.29	0.29	0.21	0.21	0	0.43	0.9493	0.0036	0.9964	1.9846	495	542	1037	10771414	11950863	8782628	9221245	498	40726648	0.25	0.26	0.24	0.25	0.49	0.9181	0.1197	0.8917	1.9696	15670	354	390	744	302378	256787	332236	332208	1223609	0.26	0.21	0.26	0.27	0.53	0.8629	0.3066	0.7535	1.935	0	7374811	8326303	5952547	6294058	398	27948117	0.23	0.27	0.24	0.25	0.49	0.8961	0.1885	0.8381	1.9479	116	109	225	50235	46998	49692	50201	197126	0.27	0.24	0.24	0.25	0.49	0.8647	0.3267	0.7526	1.9152	0	776948	799643	541417	545936	100	2664044	0.27	0.28	0.23	0.23	0.46	0.9044	0.1595	0.8608	1.9594	3	15	18	220	358	366	463	1407	0.16	0.25	0.26	0.33	0	0.58	0.8693	0.3554	0.7128	1.9468	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8465	10501	2766	5074	7282	11713	7465	4715	7724	8096	5083	9161	6482	3757	4898	6167	6001	9348	7026	5339	14084	3953	8017	5675	12476	7550	3118	5347	3411	8248	6671	5590	5400	2927	6827	7690	6586	9320	4518	11345	8626	4487	8151	8698	6701	3739	7272	8205	4974	4854	2832	4521	2836	8127	7222	8667	1391	5301	5282	2402	5951	1893	5105	2862
GCF_007474595.2	NC_044316	NC_044316.2	Lynx canadensis isolate LIC74 chromosome E1; mLynCan4.pri.v2; whole genome shotgun sequence.	16044990	15980193	14272767	14238759	133444	60670153	0.26	0.26	0.24	0.23	0	0.47	0.9521	0.0032	0.9968	1.9963	682	707	1389	8671195	9604475	8106341	8475695	80919	34938625	0.23	0.24	0.26	0.27	0.53	0.9172	0.1154	0.8952	1.972	37709	489	503	992	381216	322889	475795	471072	1650972	0.24	0.2	0.27	0.28	0.55	0.8618	0.3095	0.7513	1.9343	0	5991557	6747151	5365012	5656060	80919	23840699	0.22	0.25	0.26	0.27	0.53	0.884	0.2258	0.8104	1.9374	130	122	252	60421	57981	65870	64652	248924	0.25	0.23	0.26	0.26	0.51	0.8709	0.3089	0.7606	1.926	344	358715	360234	316421	321569	0	1356939	0.24	0.26	0.25	0.25	0.5	0.9004	0.1759	0.8479	1.968	21	25	46	607	829	873	1144	3453	0.18	0.24	0.25	0.33	0	0.58	0.8812	0.2885	0.7585	1.9551	2	0	2	450	436	542	594	2022	0.21	0.22	0.27	0.29	0	0.57	0.9102	0.0686	0.9339	1.9855	10335	14076	3090	5914	9572	18651	10467	4756	10938	11511	4880	10866	7636	5393	5721	8382	7387	13042	9254	5771	21127	5399	11460	6697	17881	11094	3983	5952	3516	10820	9171	6662	7250	3022	8047	11317	9143	15278	6225	17178	12608	7262	8471	13796	10538	4310	11006	9486	6251	5855	4150	7073	2881	11053	9911	11811	1583	8534	8065	3348	7500	1907	6736	4386
GCF_007474595.2	NC_044317	NC_044317.1	Lynx canadensis isolate LIC74 chromosome E2; mLynCan4.pri.v2; whole genome shotgun sequence.	16613979	16558485	14197545	14189631	3673	61563313	0.27	0.27	0.23	0.23	0	0.46	0.9535	0.002	0.9981	1.9956	678	664	1342	7334916	8068347	6962357	7257821	1298	29624739	0.23	0.25	0.26	0.27	0.52	0.9187	0.1155	0.8948	1.9756	72631	508	504	1012	360035	308998	459941	452112	1581086	0.23	0.2	0.28	0.29	0.57	0.8595	0.3059	0.7544	1.9295	0	4573529	5146508	4221591	4442355	787	18384770	0.21	0.24	0.27	0.28	0.55	0.8816	0.2559	0.7906	1.9365	108	102	210	56137	53984	59922	58927	228970	0.26	0.22	0.26	0.27	0.52	0.8706	0.3071	0.7603	1.935	0	427568	442952	361138	363812	97	1595567	0.24	0.27	0.24	0.25	0.49	0.8954	0.2112	0.8239	1.9585	6	9	15	168	280	320	395	1163	0.15	0.24	0.27	0.34	0	0.61	0.8736	0.3497	0.718	1.9326	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10038	12068	3326	5987	9428	16504	9839	4219	10560	11109	5649	9135	8074	5471	6079	7868	7024	13758	9024	5104	19309	4950	10328	5583	15893	10705	3376	6011	2878	10307	8165	6624	6958	3542	8752	9711	8950	15502	5278	16538	11743	7440	7603	13264	9242	3855	11277	10610	5740	5605	4032	7489	3437	12226	10893	11512	1494	8339	8456	3361	6165	1609	6059	3596
GCF_007474595.2	NC_044318	NC_044318.1	Lynx canadensis isolate LIC74 chromosome E3; mLynCan4.pri.v2; whole genome shotgun sequence.	10546440	10584500	9844105	9883444	192341	41050830	0.26	0.26	0.24	0.24	0	0.48	0.9524	0.0038	0.9962	1.9965	430	423	853	5640138	6362890	5647385	5912232	495	23563140	0.22	0.24	0.27	0.28	0.54	0.9181	0.1189	0.8922	1.9701	2658	317	313	630	226818	197795	311365	305382	1041360	0.23	0.2	0.28	0.29	0.58	0.8589	0.3013	0.7571	1.9284	0	4288835	4923194	4155985	4380754	397	17749165	0.2	0.24	0.27	0.29	0.56	0.8821	0.2444	0.7977	1.9334	62	72	134	36045	36567	42476	41711	156799	0.24	0.22	0.27	0.27	0.54	0.8757	0.3059	0.7637	1.9166	0	225404	233742	212249	212843	98	884336	0.24	0.26	0.25	0.25	0.51	0.8989	0.1893	0.8385	1.9671	21	10	31	361	561	608	800	2330	0.15	0.24	0.26	0.34	0	0.61	0.8815	0.3523	0.7155	1.9362	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5838	7910	1679	3800	6217	10985	6800	2515	7104	7955	2620	5891	5052	3817	3499	4551	4867	8574	5681	3236	13422	3343	7273	3595	11193	6954	2318	3640	1693	7069	4999	4140	4488	1561	4941	6794	5882	10472	3463	11409	8246	5152	4523	9195	6540	2533	7603	6290	3826	3518	2933	5325	1513	7885	6906	8043	916	6266	6067	2512	4208	1070	4173	2820
GCF_007474595.2	NC_044319	NC_044319.2	Lynx canadensis isolate LIC74 chromosome F1; mLynCan4.pri.v2; whole genome shotgun sequence.	19786780	19692283	14806439	14785557	2163	69073222	0.29	0.29	0.21	0.21	0	0.43	0.9515	0.0031	0.9969	1.9851	458	499	957	9726527	10638223	7665242	8055114	864	36085970	0.24	0.26	0.24	0.25	0.49	0.9194	0.116	0.8953	1.9712	15591	329	311	640	266666	225462	292871	292066	1077065	0.26	0.22	0.26	0.27	0.53	0.8635	0.3033	0.7554	1.9394	8	6845387	7584004	5221976	5519063	678	25171108	0.24	0.28	0.23	0.25	0.48	0.8962	0.1919	0.836	1.9453	95	129	224	61842	59080	60869	60676	242467	0.27	0.24	0.24	0.25	0.5	0.8689	0.3235	0.7508	1.9111	0	711894	756917	526155	545604	0	2540570	0.26	0.28	0.23	0.23	0.47	0.9017	0.1792	0.8482	1.9601	21	22	43	489	757	890	1090	3226	0.15	0.23	0.28	0.34	0	0.61	0.8716	0.3289	0.7296	1.9364	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7464	9467	2446	4500	6099	10146	6362	4150	6979	7616	4143	7734	5954	3409	4417	5387	5476	7735	6166	4420	11998	3394	7147	4698	11120	6790	2988	4860	2707	7193	5537	4805	4745	2668	6126	6365	5373	8781	3782	9563	7247	3754	7202	7294	5952	3209	6513	7338	4285	4197	2648	4063	2731	7228	6849	7842	1485	4890	4812	2063	5470	1790	5089	2584
GCF_007474595.2	NC_044320	NC_044320.2	Lynx canadensis isolate LIC74 chromosome F2; mLynCan4.pri.v2; whole genome shotgun sequence.	24678182	24673859	16932872	16981267	4426	83270606	0.3	0.3	0.2	0.2	0	0.41	0.9497	0.0015	0.9985	1.975	324	285	609	8996376	9870500	6539671	6855660	1091	32263298	0.26	0.28	0.23	0.24	0.46	0.9183	0.12	0.8925	1.9604	20487	212	171	383	162676	137153	158848	164322	622999	0.27	0.23	0.24	0.26	0.5	0.8635	0.3018	0.7568	1.9342	0	5724688	6342687	4090787	4297733	1091	20456986	0.26	0.29	0.22	0.23	0.45	0.8952	0.1801	0.8451	1.9294	82	82	164	46813	44384	42082	41819	175098	0.28	0.25	0.23	0.24	0.47	0.8653	0.3543	0.7321	1.8953	0	674852	702405	508315	518994	0	2404566	0.27	0.29	0.22	0.22	0.44	0.9078	0.158	0.8627	1.9615	11	11	22	277	445	425	564	1711	0.17	0.26	0.25	0.33	0	0.58	0.8714	0.3704	0.7015	1.9491	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4452	5525	1518	2693	3683	5666	3618	2992	3543	4051	3054	5075	3241	1767	2686	3269	3037	4715	3568	3403	6647	1950	3522	3000	6256	3430	1686	3048	2024	4036	3265	3073	2409	2032	3659	3724	3173	4002	2366	4894	4186	2119	5038	4128	3328	2191	3201	4388	2582	2558	1369	2469	1989	3782	3396	4286	949	2530	2415	1120	3331	1336	2792	1393
GCF_007474595.2	NC_044321	NC_044321.2	Lynx canadensis isolate LIC74 chromosome X; mLynCan4.pri.v2; whole genome shotgun sequence.	36311605	36352312	24835801	24897643	139362	122536723	0.3	0.3	0.2	0.2	0	0.41	0.9465	0.0018	0.9982	1.9739	524	486	1010	10449774	11571945	7756072	8038190	38805	37854786	0.26	0.27	0.23	0.24	0.47	0.917	0.1348	0.8806	1.9715	24584	372	326	698	294149	246075	283087	290679	1113990	0.27	0.23	0.24	0.26	0.5	0.8659	0.3081	0.7525	1.9441	0	7757198	8676066	5615169	5821047	37805	27907285	0.26	0.29	0.22	0.23	0.45	0.8966	0.1973	0.8326	1.9484	105	122	227	40453	39754	37256	37430	154893	0.28	0.25	0.22	0.24	0.47	0.8598	0.4061	0.7065	1.8735	0	748066	812728	561136	573995	200	2696125	0.27	0.29	0.22	0.22	0.44	0.9042	0.1786	0.8471	1.9594	19	11	30	314	628	605	810	2357	0.14	0.27	0.26	0.34	0	0.6	0.8722	0.485	0.6267	1.9177	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8637	10409	2857	5057	6703	10899	6728	5143	6324	7002	5615	10127	5890	2522	4736	6046	5885	8107	6471	5743	11757	3886	6764	6515	11338	6286	3317	5576	3705	7659	5948	5500	4600	3339	6163	6587	5435	7255	4234	9178	7067	3167	8794	7036	5385	3923	5828	7494	4334	4710	2081	3037	3208	7344	6038	8150	1495	3585	3648	2023	6311	1880	4728	2477
GCF_007474595.2	NC_050200	NC_050200.1	Lynx canadensis isolate LIC74 chromosome Y; mLynCan4.pri.v2; whole genome shotgun sequence.	533233	477720	328367	322585	262836	1924741	0.28	0.25	0.17	0.17	0.14	0.34	0.9357	0.0638	0.9391	1.8792	8	11	19	185377	227723	118619	126999	0	658718	0.3	0.33	0.18	0.19	0.38	0.9164	0.1554	0.8598	1.945	0	4	9	13	9429	8198	6779	7565	31971	0.3	0.26	0.21	0.23	0.44	0.8672	0.2945	0.7601	1.9493	0	139376	176645	87711	93858	0	497590	0.28	0.36	0.17	0.19	0.36	0.8865	0.226	0.8083	1.9117	4	2	6	1463	1503	908	956	4830	0.32	0.28	0.22	0.19	0.4	0.8656	0.289	0.7675	1.936	0	6790	5532	3406	3523	0	19251	0.31	0.29	0.2	0.2	0.4	0.9019	0.1707	0.8488	1.9456	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	282	277	150	167	183	261	197	199	144	200	231	307	185	47	180	167	175	214	171	216	272	135	139	243	355	139	132	241	159	184	149	213	87	158	225	161	121	110	121	163	167	37	336	123	144	149	100	225	155	145	48	40	149	197	147	218	77	57	32	50	216	95	169	60