| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
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| GCF_008632895.1 | NC_045030 | NC_045030.1 | Mastomys coucha isolate ucsf_1 chromosome X; UCSF_Mcou_1; whole genome shotgun sequence. | 35737238 | 35774407 | 22154758 | 22138157 | 47573927 | 163378487 | 0.22 | 0.22 | 0.14 | 0.14 | 0.29 | 0.27 | 0.9442 | 0.0009 | 0.9991 | 1.7411 | 531 | 485 | 1016 | 11073854 | 12001937 | 7136445 | 7259444 | 2757569 | 40229249 | 0.27 | 0.28 | 0.2 | 0.21 | 0.04 | 0.4 | 0.9158 | 0.1138 | 0.897 | 1.9389 | 682 | 373 | 349 | 722 | 319320 | 271075 | 267994 | 278725 | 240 | 1137354 | 0.29 | 0.24 | 0.22 | 0.25 | 0 | 0.47 | 0.8654 | 0.3088 | 0.7524 | 1.9486 | 0 | 7895612 | 8652084 | 5009563 | 5077083 | 2046458 | 28680800 | 0.27 | 0.3 | 0.19 | 0.2 | 0.04 | 0.39 | 0.8956 | 0.191 | 0.8377 | 1.9098 | 0 | 136 | 112 | 248 | 37642 | 36178 | 27461 | 27365 | 0 | 128646 | 0.3 | 0.26 | 0.22 | 0.22 | 0 | 0.44 | 0.8711 | 0.2672 | 0.7804 | 1.9529 | 0 | 555226 | 568087 | 341654 | 351785 | 150341 | 1967093 | 0.28 | 0.3 | 0.19 | 0.2 | 0.04 | 0.39 | 0.9029 | 0.1719 | 0.8517 | 1.9266 | 0 | 4 | 2 | 6 | 81 | 105 | 112 | 136 | 0 | 434 | 0.19 | 0.24 | 0.26 | 0.31 | 0 | 0.57 | 0.8915 | 0.229 | 0.8009 | 1.9701 | 0 | 0 | 5 | 5 | 119 | 143 | 149 | 184 | 0 | 595 | 0.2 | 0.24 | 0.25 | 0.31 | 0 | 0.56 | 0.8986 | 0.1973 | 0.8238 | 1.9802 | 0 | 9668 | 11106 | 3513 | 6096 | 7143 | 10542 | 7585 | 6268 | 5955 | 6850 | 6785 | 11286 | 6833 | 1387 | 5592 | 6231 | 6823 | 7850 | 6730 | 6704 | 10909 | 4299 | 6315 | 7561 | 11159 | 5999 | 4282 | 6441 | 4625 | 7417 | 6157 | 6245 | 4362 | 4178 | 7081 | 5958 | 5091 | 5680 | 4359 | 7265 | 6920 | 2081 | 9834 | 5758 | 5269 | 4410 | 4792 | 8259 | 4999 | 5512 | 1524 | 1712 | 3757 | 7481 | 5732 | 8565 | 1871 | 2173 | 2019 | 1685 | 7307 | 2217 | 5197 | 1952 |
| GCF_008632895.1 | NC_045031 | NC_045031.1 | Mastomys coucha isolate ucsf_1 chromosome Y; UCSF_Mcou_1; whole genome shotgun sequence. | 152862 | 134670 | 83940 | 82797 | 54262 | 508531 | 0.3 | 0.26 | 0.17 | 0.16 | 0.11 | 0.33 | 0.933 | 0.0701 | 0.9337 | 1.8843 | 2 | 5 | 7 | 97766 | 121156 | 58382 | 63406 | 28622 | 369332 | 0.27 | 0.34 | 0.16 | 0.18 | 0.05 | 0.34 | 0.9205 | 0.1547 | 0.8583 | 1.9119 | 596 | 2 | 3 | 5 | 5962 | 5294 | 3645 | 4152 | 0 | 19053 | 0.31 | 0.28 | 0.19 | 0.22 | 0 | 0.41 | 0.8701 | 0.2761 | 0.7722 | 1.9445 | 0 | 86220 | 108686 | 51219 | 55537 | 28622 | 330284 | 0.29 | 0.36 | 0.15 | 0.17 | 0.04 | 0.32 | 0.884 | 0.2173 | 0.8142 | 1.8599 | 0 | 0 | 1 | 1 | 43 | 30 | 16 | 13 | 0 | 102 | 0.42 | 0.29 | 0.16 | 0.13 | 0 | 0.28 | 0.8682 | 0.2815 | 0.7551 | 1.8426 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 133 | 161 | 92 | 101 | 101 | 132 | 111 | 162 | 83 | 114 | 175 | 232 | 131 | 18 | 119 | 87 | 121 | 109 | 99 | 156 | 112 | 80 | 49 | 192 | 156 | 67 | 103 | 146 | 119 | 98 | 86 | 144 | 51 | 92 | 148 | 77 | 62 | 41 | 89 | 65 | 91 | 25 | 232 | 56 | 90 | 106 | 45 | 132 | 100 | 113 | 20 | 15 | 108 | 105 | 80 | 115 | 48 | 16 | 15 | 33 | 153 | 70 | 106 | 24 |
| NA | NC_036018 | NC_036018.1 | Mastomys coucha mitochondrion; complete genome. | 5579 | 4656 | 4021 | 1960 | 0 | 16216 | 0.34 | 0.29 | 0.25 | 0.12 | 0 | 0.37 | 0.9192 | 0.4348 | 0.661 | 1.9138 | 28 | 9 | 37 | 5171 | 4578 | 3629 | 2040 | 0 | 15418 | 0.34 | 0.31 | 0.2 | 0.16 | 0 | 0.36 | 0.8737 | 0.3767 | 0.7098 | 1.8941 | 52 | 5 | 1 | 6 | 1197 | 1254 | 893 | 586 | 0 | 3930 | 0.31 | 0.33 | 0.22 | 0.14 | 0 | 0.36 | 0.8683 | 0.5631 | 0.613 | 1.8614 | 43 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 8 | 22 | 508 | 464 | 250 | 275 | 0 | 1497 | 0.34 | 0.31 | 0.17 | 0.18 | 0 | 0.35 | 0.8678 | 0.2941 | 0.7549 | 1.9004 | 1 | 2 | 0 | 2 | 966 | 658 | 487 | 405 | 0 | 2516 | 0.38 | 0.26 | 0.19 | 0.16 | 0 | 0.36 | 0.9043 | 0.28 | 0.7577 | 1.9205 | 0 | 14 | 0 | 40 | 18 | 30 | 9 | 26 | 77 | 14 | 3 | 15 | 27 | 41 | 2 | 10 | 28 | 26 | 8 | 29 | 58 | 6 | 28 | 18 | 18 | 2 | 17 | 65 | 13 | 18 | 40 | 35 | 29 | 17 | 71 | 59 | 19 | 28 | 13 | 23 | 21 | 9 | 3 | 29 | 18 | 6 | 25 | 7 | 0 | 4 | 8 | 1 | 3 | 48 | 15 | 0 | 40 | 0 | 3 | 1 | 4 | 22 | 6 | 32 | 11 |