GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_011064425.1	NC_046154	NC_046154.1	Rattus rattus isolate New Zealand chromosome 1; Rrattus_CSIRO_v1; whole genome shotgun sequence.	78428358	78499781	57975225	57993059	53467	272949890	0.29	0.29	0.21	0.21	0.42	0.9518	0.0006	0.9994	1.9836	1460	1484	2944	27233426	29894368	22232486	22860109	6856	102227245	0.25	0.27	0.24	0.24	0.48	0.92	0.1158	0.8952	1.9826	63731	1189	1208	2397	960385	832700	1011444	1011642	3816171	0.26	0.22	0.25	0.27	0.52	0.866	0.3014	0.7571	1.9491	4	19757685	21977432	15922390	16384183	4405	74046095	0.24	0.28	0.23	0.24	0	0.48	0.896	0.2044	0.8267	1.9655	171	187	358	39530	39439	34778	35678	149425	0.27	0.26	0.23	0.24	0	0.47	0.8709	0.2556	0.7891	1.9528	842639	881094	577652	579884	631	2881900	0.26	0.28	0.23	0.23	0	0.46	0.9042	0.1785	0.8488	1.9725	9	8	17	239	296	320	399	1254	0.19	0.24	0.26	0.32	0	0.57	0.8929	0.2307	0.8009	1.9654	0	4	4	115	124	141	164	544	0.21	0.23	0.26	0.3	0	0.56	0.8883	0.1184	0.8902	1.9827	27868	34652	9414	17737	24360	36694	25550	14672	23519	25912	14535	28642	21255	9387	16491	19866	20673	30254	22503	16934	44652	13238	24776	18159	40496	23439	11914	18022	10573	25391	20844	18736	16834	9030	23101	24198	20945	25211	14921	30232	26897	10995	23414	24792	21116	12529	19311	25622	16945	16002	7665	10731	8917	26816	21904	28865	5135	12677	11955	6715	19453	6108	16851	8648
GCF_011064425.1	NC_046155	NC_046155.1	Rattus rattus isolate New Zealand chromosome 2; Rrattus_CSIRO_v1; whole genome shotgun sequence.	65554188	65555480	49525623	49553186	56738	230245215	0.28	0.28	0.22	0.22	0.43	0.9516	0.0003	0.9997	1.9859	1675	1674	3349	24740136	27198598	20440186	20992597	6849	93378366	0.25	0.28	0.24	0.24	0.47	0.9161	0.1378	0.8774	1.9811	39045	1393	1389	2782	1043800	952279	1122580	1100746	4219405	0.25	0.22	0.26	0.27	0.52	0.8656	0.3026	0.756	1.9498	0	18193520	20189279	14836498	15279780	3539	68502616	0.24	0.28	0.23	0.24	0	0.48	0.895	0.2162	0.8183	1.9657	172	166	338	38516	37867	32053	33362	141798	0.27	0.26	0.23	0.24	0	0.47	0.8693	0.2538	0.7908	1.9517	325075	346344	258035	256540	300	1186294	0.26	0.29	0.23	0.22	0	0.45	0.8963	0.2021	0.83	1.9584	13	14	27	389	487	499	640	2015	0.19	0.24	0.25	0.32	0	0.56	0.8805	0.2499	0.7861	1.9681	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	31992	35611	10715	20046	25900	39544	28205	17527	26570	29244	16690	29115	23700	8905	17916	21582	23895	34303	27364	20232	50673	14630	29373	19622	42292	25917	13613	20596	13215	26949	25104	21383	19077	11161	26404	25210	23311	28912	16751	33545	28250	12156	24801	26870	23453	14053	22025	28124	19398	18258	7662	10963	9946	30084	24242	31711	5484	13376	11948	7135	20597	5942	18004	8911
GCF_011064425.1	NC_046156	NC_046156.1	Rattus rattus isolate New Zealand chromosome 3; Rrattus_CSIRO_v1; whole genome shotgun sequence.	66531278	66349074	45231632	45226738	51568	223390290	0.3	0.3	0.2	0.2	0.4	0.9506	0.0014	0.9986	1.9737	843	874	1717	20397765	22253296	15011644	15401254	7290	73071249	0.27	0.28	0.22	0.23	0.45	0.918	0.1171	0.8948	1.9768	289261	644	670	1314	558014	467313	505039	521504	2051870	0.28	0.23	0.23	0.25	0.49	0.8678	0.3032	0.7561	1.9503	0	15365659	16927749	11230390	11511599	4957	55040354	0.27	0.31	0.21	0.22	0	0.43	0.9023	0.1785	0.846	1.9597	140	136	276	27674	26936	22526	23863	100999	0.28	0.26	0.22	0.24	0	0.46	0.8688	0.2556	0.787	1.9489	335509	354933	244563	250850	100	1185955	0.27	0.3	0.21	0.22	0	0.43	0.9051	0.1683	0.8551	1.9635	17	23	40	519	689	752	939	2899	0.18	0.24	0.26	0.32	0	0.58	0.8801	0.2736	0.7671	1.9598	0	1	1	32	35	42	44	153	0.21	0.23	0.27	0.29	0	0.56	0.8987	0.068	0.9344	1.988	15592	20185	5482	10265	12168	18401	12532	9879	11846	13216	9902	18038	11695	4715	9816	11564	11569	14733	12204	10797	21057	6799	12610	11257	21141	11261	6482	10587	6768	13766	11018	10482	8530	6549	13437	12569	10439	11175	7818	13117	13668	4482	16765	11058	10655	7735	9585	15146	9396	9251	3938	4686	6235	13060	11396	14548	3339	5751	5330	3215	11815	4116	9562	4395
GCF_011064425.1	NC_046157	NC_046157.1	Rattus rattus isolate New Zealand chromosome 4; Rrattus_CSIRO_v1; whole genome shotgun sequence.	53370712	53490458	37952005	37981076	30933	182825184	0.29	0.29	0.21	0.21	0.42	0.9503	0.0015	0.9985	1.9792	790	804	1594	18432517	20087121	14344950	14675080	4197	67543865	0.26	0.28	0.23	0.23	0.46	0.9204	0.1144	0.8965	1.9807	9331	648	649	1297	556628	472879	548030	555899	2133436	0.27	0.22	0.25	0.26	0.51	0.867	0.3033	0.7561	1.9508	0	13985675	15362546	10673390	10899835	3466	50924912	0.26	0.29	0.22	0.23	0	0.45	0.9004	0.1853	0.8412	1.9656	105	107	212	25871	25685	21166	21981	94703	0.27	0.26	0.22	0.24	0	0.47	0.8679	0.2389	0.8024	1.9545	273096	292793	207977	213290	133	987289	0.27	0.28	0.22	0.23	0	0.45	0.9047	0.1667	0.8566	1.9685	1	2	3	43	57	57	70	227	0.19	0.25	0.25	0.31	0	0.56	0.8929	0.2434	0.7936	1.973	1	3	4	93	99	127	151	470	0.2	0.21	0.27	0.32	0	0.59	0.8761	0.1279	0.8814	1.9713	15926	20041	5292	10007	12894	20345	13176	8884	13040	14413	8839	16949	12389	5115	9586	11303	12138	15643	12767	10086	23879	7353	13714	10732	22685	12625	6581	10555	6380	14602	11444	10595	9040	5861	13557	13161	11310	12868	8057	15264	14991	5467	14870	12503	11724	7256	10314	15481	9276	9334	4254	5533	5614	14313	12713	16035	3189	6546	6040	3616	11529	3681	9792	4445
GCF_011064425.1	NC_046158	NC_046158.1	Rattus rattus isolate New Zealand chromosome 5; Rrattus_CSIRO_v1; whole genome shotgun sequence.	45665876	45640869	33754338	33735837	27832	158824752	0.29	0.29	0.21	0.21	0.42	0.9505	0.0005	0.9995	1.9836	1043	1015	2058	16860863	18466960	13571069	13965963	3028	62867883	0.25	0.28	0.23	0.23	0.46	0.9162	0.1296	0.8833	1.9797	58045	872	846	1718	674602	601104	673291	670535	2619532	0.26	0.22	0.25	0.26	0.51	0.8666	0.3037	0.7552	1.9506	0	12910694	14262672	10249535	10544919	2128	47969948	0.25	0.29	0.23	0.24	0	0.46	0.8974	0.1917	0.8359	1.9662	124	120	244	26010	24755	22243	23032	96040	0.28	0.25	0.23	0.24	0	0.47	0.8672	0.2649	0.7844	1.937	390510	422283	278103	281849	300	1373045	0.26	0.28	0.23	0.23	0	0.46	0.9021	0.1841	0.8444	1.9681	5	4	9	115	153	180	209	657	0.18	0.23	0.27	0.32	0	0.59	0.8925	0.2279	0.8008	1.9628	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21468	24269	7061	13324	16419	23332	17131	12149	16048	16646	11317	19018	15190	6078	11626	13715	14711	20769	16372	13685	29704	8836	17336	12859	26396	15470	8395	13987	8870	16717	15296	13676	11504	7826	17064	16091	13679	15719	10699	19554	17574	6719	17610	15250	13831	9295	12058	17829	11988	11106	4869	6601	7133	17017	14862	19019	3498	7746	7221	4049	13320	4277	11083	5248
GCF_011064425.1	NC_046159	NC_046159.1	Rattus rattus isolate New Zealand chromosome 6; Rrattus_CSIRO_v1; whole genome shotgun sequence.	46501291	46505286	33246594	33290124	33621	159576916	0.29	0.29	0.21	0.21	0.42	0.9512	0.0007	0.9993	1.9799	748	815	1563	17960848	19564323	13731653	14055444	4985	65317253	0.26	0.28	0.22	0.23	0.45	0.918	0.1164	0.8945	1.9798	39575	599	669	1268	487315	426087	476358	477973	1867733	0.27	0.23	0.24	0.26	0.5	0.867	0.3038	0.7554	1.9514	0	14088836	15488637	10667162	10932836	3845	51181316	0.26	0.29	0.22	0.23	0	0.45	0.9018	0.1824	0.8433	1.9655	93	92	185	17437	17385	15392	16517	66731	0.26	0.26	0.22	0.25	0	0.48	0.8691	0.2623	0.7888	1.9473	204183	216891	168118	173064	173	762429	0.26	0.29	0.22	0.23	0	0.45	0.9076	0.1535	0.8666	1.9721	21	13	34	518	560	592	785	2455	0.21	0.23	0.24	0.32	0	0.56	0.8818	0.1819	0.8429	1.9765	1	2	3	83	85	101	122	391	0.21	0.22	0.26	0.31	0	0.57	0.8764	0.1549	0.8569	1.976	14260	17390	4809	9192	11052	17194	11919	8572	11351	12642	8286	14780	10688	4031	8426	10454	10742	14332	11829	9803	20789	6362	12261	9508	19367	10966	5972	9446	6097	12094	10966	9569	8357	5385	11838	11261	10059	11204	7451	13461	12566	4531	13154	10560	9690	6533	8913	13127	8386	8287	3332	4327	5008	12564	10786	12999	2536	5263	4803	2872	10175	2988	8225	3712
GCF_011064425.1	NC_046160	NC_046160.1	Rattus rattus isolate New Zealand chromosome 7; Rrattus_CSIRO_v1; whole genome shotgun sequence.	37872641	38080992	27412806	27450606	21704	130838749	0.29	0.29	0.21	0.21	0.42	0.9499	0.0034	0.9966	1.9811	568	575	1143	12706110	13969103	9992958	10306073	4114	46978358	0.26	0.28	0.22	0.24	0.46	0.9189	0.1154	0.8957	1.9819	18423	422	448	870	375591	312653	354872	368872	1411988	0.27	0.23	0.24	0.26	0.5	0.8675	0.3034	0.7558	1.9506	0	9658808	10753917	7527455	7767297	1507	35708984	0.26	0.3	0.22	0.23	0	0.45	0.9026	0.1797	0.8448	1.9664	120	87	207	17287	16979	14903	15523	64692	0.27	0.26	0.22	0.25	0	0.47	0.8748	0.2518	0.7958	1.9559	170235	176874	125365	125861	100	598435	0.26	0.28	0.22	0.23	0	0.46	0.903	0.1561	0.8647	1.9726	2	6	8	118	138	146	193	595	0.2	0.23	0.24	0.33	0	0.57	0.8777	0.2574	0.7787	1.9661	0	2	2	43	51	64	80	238	0.18	0.21	0.27	0.34	0	0.61	0.8682	0.1953	0.8278	1.957	10378	13746	3646	6646	8840	14235	8827	6141	8178	9108	6380	12340	7732	3289	6518	7589	7571	10542	8085	6847	15584	4611	8745	7844	14603	7791	4474	7096	4289	9108	7383	7178	6096	4147	8772	9281	7336	8019	5447	9880	9828	3894	10731	8281	7185	5140	6493	10148	5949	6189	2741	3830	4012	9072	8252	9875	1961	4429	3923	2419	7635	2478	6348	3205
GCF_011064425.1	NC_046161	NC_046161.1	Rattus rattus isolate New Zealand chromosome 8; Rrattus_CSIRO_v1; whole genome shotgun sequence.	32720923	32712715	24952235	24924149	18967	115328989	0.28	0.28	0.22	0.22	0.43	0.9507	0.0007	0.9993	1.9867	786	675	1461	13125821	14423936	10794350	11110761	2122	49456990	0.26	0.28	0.23	0.23	0.46	0.9191	0.126	0.8863	1.9819	5265	637	560	1197	494654	441314	498086	498822	1932876	0.26	0.22	0.25	0.26	0.51	0.867	0.3017	0.757	1.9508	0	9895179	10972259	8047633	8288652	1497	37205220	0.25	0.29	0.23	0.24	0	0.46	0.8985	0.1967	0.8321	1.9673	104	75	179	17645	17399	15009	15567	65620	0.27	0.26	0.23	0.24	0	0.47	0.8677	0.2827	0.772	1.9533	197124	193443	151372	152730	0	694669	0.27	0.29	0.21	0.23	0	0.45	0.8986	0.2125	0.8241	1.9634	3	2	5	73	87	90	111	361	0.2	0.24	0.25	0.31	0	0.56	0.8913	0.1963	0.8304	1.9759	0	1	1	37	37	33	46	153	0.24	0.24	0.22	0.3	0	0.52	0.8987	0.1646	0.8587	1.9891	15344	17051	4890	9490	11840	18207	12319	8637	11896	12487	8238	14933	11067	4380	8605	10205	11471	15282	12289	9891	22030	6896	12855	9829	20041	11546	6193	9791	6517	12634	11229	9975	8644	5222	12337	11693	10252	11932	7693	14215	13131	4926	12847	11578	10028	6913	9460	12908	8937	8183	3667	4636	4935	12781	10591	13983	2550	5741	4955	3236	9747	3025	8303	4177
GCF_011064425.1	NC_046162	NC_046162.1	Rattus rattus isolate New Zealand chromosome 9; Rrattus_CSIRO_v1; whole genome shotgun sequence.	26593941	26398973	21871465	21832867	12456	96709702	0.27	0.27	0.23	0.23	0.45	0.952	0.0046	0.9955	1.9933	955	973	1928	12192292	13261474	10815748	11113958	591	47384063	0.24	0.26	0.25	0.25	0.5	0.9161	0.1305	0.8831	1.9851	7898	762	787	1549	569831	499406	637086	628801	2335124	0.25	0.21	0.26	0.27	0.53	0.8658	0.3014	0.7564	1.9517	0	9048588	9963033	7860820	8102720	491	34975652	0.23	0.27	0.24	0.25	0	0.49	0.8923	0.2192	0.8156	1.9678	109	101	210	23761	23649	22958	23252	93620	0.26	0.25	0.24	0.26	0	0.49	0.8749	0.2497	0.7918	1.9657	163498	172796	148115	155043	0	639452	0.24	0.28	0.24	0.24	0	0.48	0.8931	0.2225	0.817	1.9689	28	29	57	754	958	1089	1397	4198	0.18	0.23	0.26	0.33	0	0.59	0.8842	0.2515	0.7833	1.9578	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17102	20720	5338	10454	14128	24591	16079	7930	15408	15948	7805	16399	12261	5281	9132	12095	12640	18814	14238	9100	29249	8119	16683	10681	25594	15309	6923	10165	6167	15341	13667	10988	10679	4967	13750	15523	13178	16953	9155	19654	16987	7167	12543	15630	14130	7096	12615	14966	10478	9505	4598	6262	4365	16350	13727	17415	2858	8421	7025	4096	11390	3011	10129	5464
GCF_011064425.1	NC_046163	NC_046163.1	Rattus rattus isolate New Zealand chromosome 10; Rrattus_CSIRO_v1; whole genome shotgun sequence.	27830965	27636793	19764933	19722819	19955	94975465	0.29	0.29	0.21	0.21	0.42	0.951	0.0046	0.9954	1.9794	356	401	757	9095993	9952684	7034275	7212462	1370	33296784	0.26	0.28	0.22	0.23	0.46	0.9212	0.1167	0.8945	1.9805	4448	278	326	604	265840	224670	252918	258434	1001862	0.27	0.23	0.24	0.26	0.5	0.8683	0.2971	0.7593	1.9545	0	7193050	7922636	5495278	5626729	1350	26239043	0.26	0.3	0.22	0.22	0	0.44	0.9039	0.172	0.8507	1.9667	45	52	97	8766	8041	7369	7285	31461	0.28	0.26	0.22	0.24	0	0.46	0.8679	0.2651	0.7817	1.9517	127823	134877	84003	86026	0	432729	0.28	0.29	0.2	0.23	0	0.43	0.8991	0.1965	0.8342	1.9573	11	9	20	249	345	387	487	1468	0.17	0.23	0.26	0.33	0	0.6	0.8847	0.2801	0.7602	1.9536	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8036	9867	2616	4972	6162	9331	6248	4357	5944	6824	4279	8041	5823	2341	4772	5364	5652	7584	6066	4754	11012	3234	6542	5043	10809	5981	3330	5214	3031	6578	5629	4939	4371	2906	6699	5919	5112	5800	3812	7124	6559	2186	7156	5361	5005	3506	4675	7564	4358	4326	1961	2378	2725	6426	6009	7294	1576	2869	2627	1593	5431	1744	4734	2173
GCF_011064425.1	NC_046164	NC_046164.1	Rattus rattus isolate New Zealand chromosome 11; Rrattus_CSIRO_v1; whole genome shotgun sequence.	28964712	28817357	20415281	20399009	18494	98614853	0.29	0.29	0.21	0.21	0.41	0.9492	0.0029	0.9971	1.9784	399	412	811	8374604	9295482	6609915	6839309	2153	31121463	0.27	0.28	0.22	0.23	0.45	0.9202	0.1143	0.8965	1.9787	283	301	321	622	292767	243792	270012	279008	1085579	0.28	0.23	0.24	0.26	0.5	0.8672	0.3013	0.7572	1.9496	0	6359065	7130978	4939290	5101408	1434	23532175	0.26	0.3	0.22	0.22	0	0.44	0.9023	0.1764	0.8473	1.9629	65	65	130	12915	12959	10696	11364	47934	0.27	0.27	0.22	0.24	0	0.46	0.8702	0.2537	0.792	1.9564	111410	117739	84460	87418	101	401128	0.27	0.3	0.21	0.23	0	0.43	0.8957	0.2151	0.8244	1.9556	2	2	4	60	69	70	92	291	0.21	0.24	0.24	0.32	0	0.55	0.8468	0.2523	0.7815	1.9742	0	1	1	22	30	28	39	119	0.18	0.25	0.24	0.33	0	0.56	0.9044	0.318	0.7256	1.97	7780	10447	2910	5103	6795	10254	6772	4916	6080	7143	5024	9808	6208	2519	4977	5806	6038	7783	6364	5613	11513	3653	6539	5909	11227	6062	3361	5368	3431	7312	5752	5678	4583	3188	7047	6894	5568	6074	4091	7212	7257	2635	8652	6159	5637	4010	4639	8093	4905	4941	2025	2872	3211	6843	5976	7574	1715	3178	3141	1769	6157	2307	5066	2449
GCF_011064425.1	NC_046165	NC_046165.1	Rattus rattus isolate New Zealand chromosome 12; Rrattus_CSIRO_v1; whole genome shotgun sequence.	27694082	27629894	19372901	19376037	15124	94088038	0.29	0.29	0.21	0.21	0.41	0.949	0.0012	0.9988	1.9774	406	400	806	8677607	9472234	6728536	6914876	2722	31795975	0.26	0.28	0.23	0.24	0.46	0.9173	0.1219	0.8901	1.9822	10546	314	310	624	235999	205577	233720	236221	911517	0.27	0.23	0.24	0.26	0.5	0.8666	0.3031	0.756	1.9511	0	6635133	7335952	5112305	5263613	1722	24348725	0.26	0.29	0.22	0.23	0	0.45	0.9004	0.1892	0.838	1.967	63	54	117	15148	14591	12436	12787	54962	0.28	0.26	0.22	0.24	0	0.46	0.8749	0.2347	0.8016	1.9539	304235	324514	208647	211682	0	1049078	0.27	0.29	0.2	0.23	0	0.43	0.8976	0.1858	0.8423	1.9548	5	10	15	198	264	288	367	1117	0.18	0.24	0.26	0.33	0	0.58	0.891	0.2713	0.7721	1.9573	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7111	8703	2398	4490	5551	8697	5759	4057	5518	5793	3809	7101	4885	2115	4065	4961	5025	6983	5885	4423	10250	2995	6038	4566	9231	5290	2918	4561	2891	6015	5227	4787	4098	2581	5654	5538	4780	5687	3519	6776	6147	2258	6377	5377	4911	3315	4510	6390	4176	3822	1706	2297	2382	6076	5294	6524	1292	2731	2549	1465	4583	1581	3950	1919
GCF_011064425.1	NC_046166	NC_046166.1	Rattus rattus isolate New Zealand chromosome 13; Rrattus_CSIRO_v1; whole genome shotgun sequence.	22800207	22975538	16506089	16522340	14337	78818511	0.29	0.29	0.21	0.21	0.42	0.9503	0.0043	0.9957	1.9809	332	352	684	7633683	8342346	6095653	6260209	1554	28333445	0.26	0.27	0.23	0.24	0.47	0.9221	0.1065	0.9028	1.9837	15149	280	292	572	231323	194998	234273	239677	900271	0.26	0.22	0.25	0.27	0.52	0.8672	0.3028	0.7561	1.9484	0	6153755	6781070	4820996	4948230	1554	22705605	0.25	0.28	0.23	0.24	0	0.47	0.8997	0.1856	0.8408	1.9683	44	43	87	11142	10626	9516	9942	41226	0.28	0.25	0.23	0.24	0	0.47	0.8754	0.2282	0.8061	1.9659	310585	342434	235175	242736	0	1130930	0.27	0.29	0.21	0.22	0	0.44	0.9096	0.1516	0.8687	1.9694	2	0	2	21	37	38	48	144	0.15	0.26	0.26	0.33	0	0.6	0.8863	0.3955	0.6809	1.9415	1	0	1	24	25	33	37	119	0.2	0.21	0.28	0.31	0	0.59	0.8809	0.0776	0.9259	1.9759	6448	8282	2186	4188	5649	8626	5787	3462	5442	6244	3593	7046	5110	2463	3924	4772	4729	6836	5088	4031	10066	3170	5669	4519	9425	5245	2696	4227	2465	6033	4630	4349	3993	2371	5634	5910	4959	5608	3460	6926	6123	2578	6215	5644	4954	2951	4628	6330	4074	3839	2037	2763	2202	5860	5326	6659	1286	3037	2915	1644	4623	1464	4058	2094
GCF_011064425.1	NC_046167	NC_046167.1	Rattus rattus isolate New Zealand chromosome 14; Rrattus_CSIRO_v1; whole genome shotgun sequence.	23533802	23421177	17512335	17513477	13308	81994099	0.29	0.29	0.21	0.21	0.43	0.9503	0.0024	0.9976	1.9846	425	392	817	8307322	9110204	6508191	6710025	2023	30637765	0.26	0.27	0.23	0.24	0.47	0.9174	0.127	0.8864	1.9759	2297	305	280	585	222175	180012	207371	214497	824055	0.28	0.23	0.24	0.26	0.49	0.8679	0.3095	0.7512	1.9506	0	6422470	7122353	4998874	5144101	1663	23689461	0.26	0.3	0.21	0.22	0	0.44	0.9038	0.175	0.8487	1.9651	53	52	105	17777	17529	14167	15333	64806	0.28	0.26	0.22	0.25	0	0.47	0.878	0.2524	0.794	1.9574	349051	370456	254032	260830	0	1234369	0.27	0.29	0.21	0.23	0	0.44	0.9032	0.1965	0.842	1.9551	48	41	89	1319	1509	1681	2135	6644	0.2	0.23	0.25	0.32	0	0.57	0.8849	0.2379	0.7944	1.966	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6234	9026	2049	3872	5061	8221	5009	3508	4866	5136	3633	7034	4721	2047	3753	4634	4387	6053	4639	3950	8625	2745	5050	4350	8353	4816	2469	4033	2529	5197	4733	3993	3599	2380	5040	5240	4270	4722	3270	5987	5806	2383	6599	4973	4241	2886	3680	6318	3552	3422	1666	2359	2160	4999	4794	5676	1169	2479	2357	1362	4568	1434	3591	1663
GCF_011064425.1	NC_046168	NC_046168.1	Rattus rattus isolate New Zealand chromosome 15; Rrattus_CSIRO_v1; whole genome shotgun sequence.	23161993	22996986	16608066	16535034	16164	79318243	0.29	0.29	0.21	0.21	0.42	0.9502	0.0058	0.9942	1.9804	290	312	602	7154939	7850835	5635801	5805735	1226	26448536	0.26	0.28	0.22	0.23	0.45	0.9216	0.1133	0.8973	1.9809	15791	223	241	464	209924	176221	202924	207392	796461	0.27	0.23	0.24	0.26	0.5	0.8676	0.3021	0.7565	1.9518	0	5447969	6032153	4233896	4366375	874	20081267	0.26	0.3	0.21	0.22	0	0.44	0.904	0.1737	0.8494	1.966	48	50	98	8593	8360	7078	7664	31695	0.27	0.27	0.22	0.25	0	0.46	0.8708	0.25	0.7919	1.9598	53957	56732	43082	44804	0	198575	0.26	0.29	0.22	0.23	0	0.44	0.8968	0.1862	0.8403	1.9559	2	0	2	30	35	38	43	146	0.21	0.24	0.26	0.29	0	0.55	0.9068	0.1383	0.871	1.9876	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5484	7296	2179	3770	4950	7943	4880	3413	4718	4659	3876	6724	4400	2061	3572	4574	4600	6801	4671	3838	8854	2701	4869	4606	8079	4632	2484	3942	2449	5159	4317	3893	3479	2221	5144	5405	4248	4686	3141	5754	5535	2147	5782	4700	3939	2914	3723	5591	3203	3269	1599	2256	2196	5012	4463	5633	1018	2415	2449	1363	4182	1344	3319	1798
GCF_011064425.1	NC_046169	NC_046169.1	Rattus rattus isolate New Zealand chromosome 16; Rrattus_CSIRO_v1; whole genome shotgun sequence.	11662417	11621850	10574437	10562246	10062	44431012	0.26	0.26	0.24	0.24	0.48	0.9496	0.0023	0.9977	1.9982	358	338	696	5223321	5781247	5116549	5247050	1929	21370096	0.24	0.26	0.25	0.26	0.5	0.9227	0.1079	0.9014	1.9894	33749	295	278	573	230582	192613	266734	262689	952618	0.25	0.21	0.27	0.28	0.54	0.8654	0.3053	0.7544	1.948	0	3803533	4293808	3694004	3803486	1229	15596060	0.23	0.27	0.25	0.26	0	0.51	0.8957	0.2119	0.8208	1.9731	36	38	74	11358	11992	12214	12014	47578	0.24	0.24	0.26	0.27	0	0.52	0.8643	0.2482	0.7977	1.9526	39354	41667	36193	36983	0	154197	0.23	0.25	0.26	0.26	0	0.51	0.8865	0.2583	0.7903	1.9592	6	2	8	110	135	152	184	581	0.19	0.23	0.26	0.32	0	0.58	0.889	0.2155	0.8119	1.9666	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6180	8705	2006	4051	5776	10335	5921	2687	6448	6882	2711	6534	5188	2777	3980	4635	4766	7590	5332	3263	11944	3059	6856	4042	10945	6368	2592	3866	1996	6307	5044	4151	4372	1756	5472	6229	5648	7358	3486	8231	7548	3321	5003	6493	5403	2576	5200	6452	3805	3806	2243	3179	1659	7006	6212	7553	1096	4070	3639	1863	4585	1122	4156	2354
GCF_011064425.1	NC_046170	NC_046170.1	Rattus rattus isolate New Zealand chromosome 17; Rrattus_CSIRO_v1; whole genome shotgun sequence.	13428641	13525746	10787469	10754123	8145	48504124	0.28	0.28	0.22	0.22	0.44	0.9487	0.0052	0.9949	1.9909	318	286	604	5142146	5634206	4573089	4668361	757	20018559	0.25	0.26	0.24	0.25	0.49	0.9204	0.112	0.8989	1.9856	643	252	224	476	183015	158153	206391	206803	754362	0.25	0.22	0.26	0.27	0.54	0.8666	0.2892	0.7648	1.9542	0	3759155	4127116	3301428	3375243	717	14563659	0.24	0.27	0.24	0.25	0	0.49	0.8949	0.2072	0.8249	1.9706	40	25	65	7539	7377	6560	6553	28029	0.26	0.26	0.24	0.24	0	0.48	0.8786	0.2514	0.7909	1.9643	53365	55985	43728	41606	0	194684	0.26	0.27	0.24	0.23	0	0.47	0.9044	0.1758	0.8502	1.9675	2	5	7	88	119	151	177	535	0.16	0.22	0.28	0.33	0	0.61	0.8763	0.232	0.7953	1.952	1	19	20	448	502	663	771	2384	0.19	0.21	0.28	0.32	0	0.6	0.8768	0.1323	0.8771	1.9658	5365	6440	1663	3470	4672	7789	5084	2522	4634	5519	2345	5299	4063	1970	3139	3765	3804	6236	4356	2880	9524	2523	4941	3569	8502	4705	2185	3378	1746	4944	3928	3518	3337	1444	4506	5034	4428	5400	2866	6354	5699	2447	3883	5244	4358	2206	3971	5012	3215	2990	1688	2399	1366	5494	4781	6016	942	2882	2660	1432	3586	964	3277	1765
GCF_011064425.1	NC_046171	NC_046171.1	Rattus rattus isolate New Zealand chromosome 18; Rrattus_CSIRO_v1; whole genome shotgun sequence.	14092561	13954664	10907488	10879444	12378	49846535	0.28	0.28	0.22	0.22	0.44	0.9506	0.0062	0.9938	1.9884	353	352	705	5325930	5808048	4663003	4755996	2870	20555847	0.24	0.27	0.25	0.25	0.49	0.9162	0.1341	0.8805	1.9832	5686	292	292	584	197589	175297	221021	220275	814182	0.25	0.21	0.26	0.28	0.54	0.8655	0.3085	0.7528	1.9464	0	3866925	4296421	3314015	3395116	1279	14873756	0.23	0.27	0.25	0.25	0	0.5	0.8927	0.2238	0.813	1.9655	42	38	80	7715	7620	6695	6879	28909	0.27	0.25	0.23	0.25	0	0.48	0.872	0.2384	0.8048	1.9522	162815	171423	120523	119966	201	574928	0.26	0.28	0.23	0.23	0	0.46	0.9009	0.1966	0.8335	1.9699	2	0	2	26	31	46	51	154	0.17	0.2	0.3	0.33	0	0.63	0.9043	0.1359	0.8755	1.9459	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5904	7099	1874	3702	4810	7898	5411	2887	5527	5914	2630	5585	4321	2364	3397	3957	4572	6284	4856	3316	9838	2751	5991	3497	8385	5192	2314	3748	2104	5673	4575	3772	3671	1804	4977	5099	4281	6067	2905	6631	5805	2331	4573	5060	5112	2551	4766	5447	3713	3015	1863	2446	1720	5759	5354	6201	1067	3030	2865	1417	3799	1060	3623	1960
GCF_011064425.1	NC_046172	NC_046172.1	Rattus rattus isolate New Zealand chromosome X; Rrattus_CSIRO_v1; whole genome shotgun sequence.	39673783	39817210	25361969	25406391	114160	130373513	0.3	0.31	0.19	0.19	0.39	0.9442	0.0027	0.9973	1.9642	508	533	1041	8496384	9338064	5783776	5883452	8289	29509965	0.28	0.29	0.21	0.22	0.43	0.915	0.1286	0.8848	1.9709	19682	325	308	633	215426	180839	183410	191669	771344	0.29	0.24	0.22	0.25	0.47	0.8661	0.3115	0.7498	1.9471	0	4349982	4815208	2901526	2937875	4394	15008985	0.28	0.31	0.2	0.21	0	0.41	0.8969	0.1897	0.8386	1.9484	73	97	170	22582	23625	17097	17710	81014	0.28	0.27	0.21	0.23	0	0.45	0.8697	0.2519	0.7914	1.9497	249939	281527	171201	174049	55	876771	0.27	0.31	0.2	0.22	0	0.42	0.9041	0.1879	0.8405	1.9524	2	3	5	73	91	88	111	363	0.2	0.25	0.24	0.31	0	0.55	0.8956	0.2244	0.8027	1.9794	0	1	1	22	25	34	38	119	0.18	0.21	0.29	0.32	0	0.61	0.8747	0.1194	0.8874	1.9654	6387	7927	2319	4092	4646	7419	4839	4144	4102	4620	4387	7788	4263	1078	3595	4310	4533	5243	4599	4383	7486	2856	4458	5148	7514	4142	2776	4037	3137	4963	4148	4115	3176	2593	4587	4288	3467	3910	3124	5011	4451	1569	6755	4159	3670	3112	3339	5585	3352	3612	1226	1414	2508	5010	4072	5644	1177	1797	1565	1272	4950	1476	3285	1477
GCF_011064425.1	NC_046173	NC_046173.1	Rattus rattus isolate New Zealand chromosome Y; Rrattus_CSIRO_v1; whole genome shotgun sequence.	699188	714339	441772	435089	2910	2293298	0.3	0.31	0.19	0.19	0.38	0.9334	0.0183	0.9818	1.9593	14	5	19	120526	151940	79745	83768	400	436379	0.28	0.31	0.2	0.21	0.41	0.916	0.1527	0.8636	1.9574	0	11	1	12	6819	5951	4489	5202	22461	0.3	0.26	0.2	0.24	0.44	0.8738	0.2633	0.7803	1.9476	0	71366	90710	46682	48133	200	257091	0.27	0.36	0.18	0.19	0	0.37	0.8799	0.2657	0.7837	1.9009	2	0	2	213	177	140	136	666	0.3	0.29	0.2	0.21	0	0.41	0.8537	0.3726	0.7048	1.9306	2494	2741	1488	1617	0	8340	0.31	0.3	0.19	0.2	0	0.4	0.9093	0.1595	0.854	1.9569	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	197	175	121	116	140	158	140	173	91	126	167	227	146	34	125	105	116	149	112	174	183	87	89	221	195	82	101	143	114	124	107	151	66	126	170	127	81	50	104	76	100	42	239	79	99	110	74	192	110	126	35	41	112	114	92	132	44	30	34	36	165	80	140	25
NA	NC_012374	NC_012374.1	Rattus rattus mitochondrion; complete genome.	5546	4547	4162	2050	0	16305	0.34	0.28	0.26	0.13	0.38	0.9213	0.439	0.6562	1.9219	12	1	13	3617	3344	3032	1411	0	11404	0.32	0.3	0.26	0.12	0.39	0.8837	0.5355	0.6173	1.8932	51	6	1	7	1517	1572	1239	745	5073	0.31	0.31	0.24	0.14	0.38	0.8764	0.5453	0.6121	1.8857	43	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	3	9	214	193	110	102	619	0.35	0.31	0.18	0.16	0	0.34	0.861	0.3753	0.7002	1.8854	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24	6	55	23	33	9	29	87	26	7	23	36	49	3	10	38	25	12	57	62	3	24	30	21	2	31	90	16	25	52	67	38	15	73	68	26	30	17	32	43	11	6	32	24	8	19	17	0	6	18	0	1	63	25	0	46	0	2	1	5	29	7	38	16