GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	fr_gene_N Frequency of 'N' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000003025.6	NC_010443	NC_010443.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 1; Sscrofa11.1; whole genome shotgun sequence.	81971102	82100765	55104835	55153430	400	274330532	0.3	0.3	0.2	0.2	0	0.4	0.9471	0.0012	0.9988	1.9721	1075	1086	2161	41946571	46510112	29875959	31112682	100	149445424	0.27	0.29	0.22	0.22	0	0.44	0.9248	0.0953	0.9119	1.9724	231174	729	738	1467	718962	604291	674615	691786	2689654	0.28	0.23	0.24	0.25	0.49	0.8639	0.3053	0.7544	1.9392	0	24151638	27225305	17193728	17965942	0	86536613	0.26	0.31	0.21	0.22	0	0.43	0.9011	0.166	0.8552	1.9481	0	262	268	530	387642	385180	300896	306805	1380523	0.28	0.25	0.23	0.24	0	0.47	0.8786	0.2481	0.7967	1.9528	0	5565397	6070050	3671875	3770109	0	19077431	0.28	0.3	0.21	0.22	0	0.43	0.9092	0.1331	0.8825	1.9597	0	8	13	21	270	403	397	468	1538	0.18	0.26	0.26	0.3	0	0.56	0.8737	0.289	0.7633	1.9617	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	19901	24143	6633	12264	16231	24335	16277	12965	15646	17664	13410	24356	15295	6324	12127	13716	14313	18518	15148	14530	28420	8595	16335	14576	27451	14935	7694	13934	9171	17632	14140	13898	10714	8545	15924	15352	13291	16612	9516	20016	17682	7534	22785	16188	13881	9738	13083	19626	11589	11929	5236	7829	8776	16917	14881	19053	4035	8576	8688	4121	15569	5627	12570	5629
GCF_000003025.6	NC_010444	NC_010444.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 2; Sscrofa11.1; whole genome shotgun sequence.	43606411	43711304	32228185	32254770	135324	151935994	0.29	0.29	0.21	0.21	0	0.42	0.9477	0.0016	0.9984	1.9831	1227	1197	2424	23708478	26317847	19156829	19816613	0	88999767	0.24	0.26	0.25	0.25	0	0.5	0.918	0.1193	0.8922	1.9744	344797	880	894	1774	619579	560942	770292	736627	2687440	0.24	0.21	0.27	0.28	0.55	0.8604	0.3113	0.7506	1.9317	0	11720629	13298847	9620827	10050506	0	44690809	0.22	0.26	0.26	0.27	0	0.52	0.8833	0.2246	0.8121	1.9374	0	204	196	400	281163	276327	238603	240116	1036209	0.27	0.24	0.24	0.25	0	0.49	0.8773	0.2524	0.7927	1.9493	0	4533246	4938820	3038298	3113655	0	15624019	0.26	0.29	0.22	0.23	0	0.45	0.9071	0.1447	0.8732	1.9595	0	17	12	29	409	519	542	678	2148	0.19	0.24	0.25	0.32	0	0.57	0.8757	0.2473	0.7892	1.9675	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18923	20992	5158	11171	16126	25601	17623	9157	17890	19006	9018	16085	13776	7871	9707	12848	13074	22150	16674	11282	34282	8822	19742	11188	27928	18179	6886	10929	7079	16688	15423	12006	12077	5574	14305	17157	15837	23390	10361	27060	19433	11011	13787	20781	16046	7440	16883	15465	10797	10212	6042	10930	5207	18967	16089	20675	2718	11944	11444	4800	12039	3274	10645	6003
GCF_000003025.6	NC_010445	NC_010445.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 3; Sscrofa11.1; whole genome shotgun sequence.	37008041	37065688	29282135	29292647	200402	132848913	0.28	0.28	0.22	0.22	0	0.44	0.9498	0.001	0.999	1.9893	823	872	1695	20364975	22810511	17348173	18044998	50102	78618759	0.24	0.26	0.25	0.26	0	0.51	0.9222	0.1016	0.9066	1.9759	117176	574	600	1174	462631	394350	547347	546446	1950774	0.25	0.21	0.26	0.28	0.54	0.8607	0.3039	0.7551	1.9314	0	11441356	13026849	9757724	10190170	50000	44466099	0.22	0.27	0.25	0.26	0	0.51	0.89	0.2085	0.8238	1.9409	0	170	173	343	230328	226186	219544	223504	899562	0.26	0.23	0.25	0.26	0	0.51	0.8788	0.2492	0.7942	1.9554	4	2760135	3025764	2055952	2121942	2	9963795	0.25	0.27	0.24	0.25	0	0.48	0.902	0.171	0.8538	1.9622	169246	11	25	36	466	609	697	869	2641	0.18	0.23	0.26	0.33	0	0.59	0.8854	0.2676	0.7725	1.9555	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12198	16194	3705	7532	11541	19729	12326	6436	12508	13904	6801	13658	9924	6284	7318	9282	9502	15020	10917	7834	23542	6087	13148	8432	20788	12117	4556	7806	4424	13036	9770	8406	8248	4323	9968	12278	10578	16677	6678	19003	14545	8201	11688	15284	11522	5658	12349	12511	7212	7411	4963	8774	4368	13475	12000	14168	2151	9744	9282	4095	9037	2885	8151	4869
GCF_000003025.6	NC_010446	NC_010446.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 4; Sscrofa11.1; whole genome shotgun sequence.	38215734	38262415	27173749	27218769	40248	130910915	0.29	0.29	0.21	0.21	0	0.42	0.9472	0.0014	0.9986	1.9792	816	729	1545	20160805	22129515	15067887	15665579	1	73023787	0.25	0.27	0.23	0.24	0	0.47	0.9219	0.1004	0.9082	1.9731	83413	534	479	1013	397207	341226	420925	425410	1584768	0.26	0.22	0.25	0.26	0.51	0.8629	0.309	0.7517	1.9378	0	10399622	11675116	7678955	8026501	1	37780195	0.25	0.29	0.23	0.24	0	0.46	0.8944	0.197	0.8326	1.945	0	204	175	379	313516	310154	248961	253297	1125928	0.27	0.25	0.23	0.24	0	0.47	0.8822	0.2377	0.8038	1.9563	0	3551853	3769983	2450907	2513969	0	12286712	0.27	0.29	0.21	0.22	0	0.43	0.909	0.1329	0.8827	1.9636	0	39	31	70	837	1172	1422	1721	5152	0.16	0.23	0.27	0.33	0	0.61	0.8711	0.2814	0.7629	1.9449	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11172	13901	3421	6839	9552	15294	9767	6601	10151	10752	6537	12248	8602	4155	6584	7587	8616	11504	9041	7612	18012	5253	10175	7514	17271	9454	4394	7371	4716	10616	8424	7544	6541	4106	8775	9273	8075	11819	5587	13291	11071	5348	10910	11312	9047	5050	9258	10770	6295	6382	3388	5327	4148	10503	9412	11220	2103	6277	5725	2643	8160	2728	6879	3588
GCF_000003025.6	NC_010447	NC_010447.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 5; Sscrofa11.1; whole genome shotgun sequence.	30197119	30160412	22021628	21995948	150900	104526007	0.29	0.29	0.21	0.21	0	0.42	0.9483	0.0012	0.9988	1.9815	711	644	1355	17084925	18815836	13063881	13598383	100	62563125	0.25	0.28	0.23	0.24	0	0.47	0.9231	0.1007	0.9073	1.9745	92341	477	440	917	346212	301723	374200	373304	1395439	0.26	0.22	0.25	0.27	0.52	0.863	0.3124	0.7494	1.935	0	8599352	9590993	6508860	6792763	0	31491968	0.24	0.28	0.23	0.24	0	0.48	0.8925	0.2012	0.8295	1.9433	0	152	127	279	189543	184676	157519	161473	693211	0.27	0.25	0.24	0.24	0	0.48	0.8799	0.2529	0.7929	1.9555	6	2380557	2571203	1643200	1688490	0	8283450	0.27	0.29	0.22	0.22	0	0.44	0.9089	0.1398	0.8772	1.9653	0	5	7	12	171	220	218	279	888	0.19	0.25	0.25	0.31	0	0.56	0.8829	0.2638	0.775	1.9671	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9935	12260	3110	6137	8183	13589	8662	5964	8737	9301	5890	10252	7247	3842	5381	7268	7160	10812	8574	6868	16460	4414	9406	6533	13909	8767	3650	6348	4188	9133	7875	6443	5937	3495	7671	8699	7005	10519	5331	12388	9871	4956	9608	9756	7695	4451	7971	8784	5749	5526	3049	4808	3557	8977	7800	9675	1579	5773	5251	2326	6936	2183	5991	3131
GCF_000003025.6	NC_010448	NC_010448.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 6; Sscrofa11.1; whole genome shotgun sequence.	47164768	47145185	38042191	38067317	424126	170843587	0.28	0.28	0.22	0.22	0	0.45	0.9505	0.0005	0.9995	1.9904	1313	1239	2552	25914410	28735667	22620713	23449719	200	100720709	0.24	0.26	0.25	0.26	0	0.51	0.9228	0.0961	0.9112	1.9788	203324	917	879	1796	647515	557548	809194	796801	2811058	0.24	0.2	0.28	0.28	0.56	0.8602	0.3064	0.7538	1.93	0	14304760	16153516	12373104	12886320	200	55717900	0.22	0.25	0.26	0.27	0	0.53	0.8872	0.2157	0.819	1.9411	0	250	218	468	296450	287312	278532	283157	1145451	0.25	0.23	0.25	0.26	0	0.51	0.8779	0.2542	0.7909	1.9547	101	2874760	3142224	2216465	2288147	0	10521596	0.25	0.27	0.23	0.24	0	0.48	0.9059	0.1582	0.8631	1.9666	197628	11	5	16	193	294	316	372	1175	0.17	0.25	0.27	0.32	0	0.58	0.8716	0.2832	0.7624	1.9572	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18037	22075	5413	10623	17428	28730	18216	8301	18708	20225	9538	17690	14362	9272	10632	13379	13094	22673	15897	10015	34642	9168	18737	11164	28970	18280	6353	10742	5636	18683	14310	11946	12135	5838	14882	17484	15488	25735	9693	28614	21302	12566	14850	23358	17123	7503	18908	17356	10018	10050	7256	12611	5663	21101	18454	21481	2748	14061	14313	5592	12037	3271	11372	6593
GCF_000003025.6	NC_010449	NC_010449.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 7; Sscrofa11.1; whole genome shotgun sequence.	34629872	34602744	26238988	26271595	100900	121844099	0.28	0.28	0.22	0.22	0	0.43	0.9495	0.001	0.999	1.9859	904	939	1843	18677388	20737544	15014870	15622552	100	70052454	0.25	0.27	0.24	0.25	0	0.48	0.9205	0.1123	0.8979	1.9801	78717	576	607	1183	434221	378789	494035	493323	1800368	0.25	0.22	0.26	0.27	0.53	0.8628	0.3127	0.7498	1.9383	0	10362063	11783387	8261265	8640986	0	39047701	0.24	0.28	0.24	0.25	0	0.48	0.8939	0.2039	0.8274	1.9548	0	190	166	356	246848	241218	211496	211955	911517	0.27	0.24	0.24	0.25	0	0.49	0.8795	0.2546	0.7911	1.9525	0	2819553	3031423	1995691	2055187	0	9901854	0.27	0.28	0.22	0.23	0	0.45	0.9083	0.1413	0.8759	1.9652	0	73	70	143	2081	2438	2724	3451	10694	0.2	0.23	0.25	0.32	0	0.58	0.8859	0.2451	0.7883	1.9664	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12369	15938	3732	7679	10582	18393	11586	6616	12197	12530	6397	12655	9329	5115	7081	8799	9511	13855	10435	7942	21745	5870	12490	8447	18926	11236	4465	7982	4649	11652	9991	8286	7664	4058	9700	11039	9380	14241	6343	16713	13091	6341	10947	13220	9911	5305	11202	11533	7055	6812	4142	6339	4087	12756	11601	13266	2035	7685	7211	3205	8177	2415	7422	3971
GCF_000003025.6	NC_010450	NC_010450.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 8; Sscrofa11.1; whole genome shotgun sequence.	41974934	42037381	27448046	27405576	100300	138966237	0.3	0.3	0.2	0.2	0	0.39	0.9468	0.0015	0.9985	1.9676	503	482	985	20543021	22526300	14326081	14912119	300	72307821	0.27	0.29	0.21	0.22	0	0.43	0.9263	0.0863	0.9197	1.9668	52454	311	292	603	270545	227383	248908	261119	1007955	0.28	0.24	0.23	0.25	0.48	0.864	0.3068	0.7534	1.9354	0	9596271	10757672	6884786	7198783	200	34437712	0.27	0.31	0.21	0.22	0	0.43	0.9028	0.1592	0.8603	1.9431	0	151	147	298	233092	230602	172151	175711	811556	0.29	0.26	0.22	0.23	0	0.45	0.8792	0.2454	0.7975	1.95	0	3724131	3946610	2360038	2421800	0	12452579	0.28	0.3	0.2	0.21	0	0.41	0.9071	0.1316	0.8844	1.9516	0	0	2	2	26	36	40	42	144	0.18	0.25	0.28	0.29	0	0.57	0.8778	0.1833	0.8449	1.9742	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7166	9192	2656	4549	5875	9243	5761	5089	5620	6489	5262	9114	5355	2642	4627	5272	5251	6984	5744	5783	10128	3253	6030	5419	9821	5231	2810	5151	3323	6569	5338	5224	4047	3432	6068	5958	4818	5998	3538	7186	6850	2981	8982	6117	5284	3886	4905	7251	4454	4427	2205	3394	3623	5885	5656	6565	1439	3529	3690	1753	5577	2162	4496	2156
GCF_000003025.6	NC_010451	NC_010451.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 9; Sscrofa11.1; whole genome shotgun sequence.	40952447	41061671	28712941	28784823	201	139512083	0.29	0.29	0.21	0.21	0	0.41	0.9488	0.0026	0.9974	1.9776	754	788	1542	25423972	27779086	18332828	19041165	1	90577052	0.26	0.29	0.23	0.23	0	0.46	0.9221	0.1149	0.896	1.9739	29926	509	541	1050	404636	371304	421021	404897	1601858	0.27	0.23	0.24	0.26	0.5	0.8649	0.3066	0.7528	1.9426	1	13266306	14719305	9437245	9860317	1	47283174	0.26	0.3	0.21	0.23	0	0.44	0.9011	0.1659	0.8554	1.9505	0	172	169	341	280885	283049	230625	235989	1030548	0.27	0.25	0.23	0.24	0	0.47	0.8807	0.243	0.8004	1.9561	0	4010442	4304521	2676650	2750693	0	13742306	0.27	0.29	0.21	0.22	0	0.43	0.9111	0.1329	0.8825	1.9651	0	4	4	8	98	153	147	181	579	0.17	0.26	0.25	0.31	0	0.57	0.8753	0.3212	0.7337	1.962	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12956	13272	3764	7211	9130	13466	9666	8246	10624	10034	7528	11917	8270	4001	6505	8498	8495	12256	10827	9043	18555	4902	12245	7515	15533	9951	4546	8110	5611	9852	10861	8485	7976	4915	9103	8662	8492	10957	6677	13419	10151	4605	11649	9673	8575	5774	8176	10238	7017	6709	3057	4279	4664	9806	8814	10846	2049	5141	4765	2595	8281	2741	6604	3342
GCF_000003025.6	NC_010452	NC_010452.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 10; Sscrofa11.1; whole genome shotgun sequence.	19839939	19845231	14795552	14776609	102122	69359453	0.29	0.29	0.21	0.21	0	0.43	0.9489	0.0008	0.9992	1.9838	315	295	610	11049576	12285846	8630759	8978888	101	40945170	0.26	0.28	0.23	0.23	0	0.46	0.927	0.089	0.9172	1.9798	11596	197	158	355	159225	129223	157186	163112	608746	0.28	0.22	0.24	0.26	0.5	0.863	0.3154	0.7473	1.9367	0	5786383	6576656	4614888	4824144	0	21802071	0.25	0.3	0.22	0.23	0	0.45	0.9038	0.166	0.8555	1.9568	0	97	105	202	149273	147276	121139	122831	540519	0.28	0.25	0.23	0.24	0	0.48	0.8804	0.2409	0.8007	1.9607	0	1390719	1493125	991749	1014604	0	4890197	0.27	0.29	0.22	0.22	0	0.44	0.9082	0.1416	0.8753	1.9686	0	4	1	5	64	89	95	116	364	0.18	0.24	0.26	0.32	0	0.58	0.8864	0.2644	0.7768	1.9637	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4108	5601	1377	2567	3725	5752	3610	2664	3511	3903	2845	5389	3244	1909	2660	3090	3060	4191	3330	2986	6113	1902	3664	3162	6101	3365	1567	2857	1735	4067	3005	2845	2592	1690	3408	3731	2977	4400	2119	4963	4046	2083	5161	3950	3198	2119	3474	4551	2312	2426	1502	2326	1902	3814	3743	4100	795	2565	2470	1157	3233	1107	2520	1522
GCF_000003025.6	NC_010453	NC_010453.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 11; Sscrofa11.1; whole genome shotgun sequence.	23424663	23591105	16052844	16051065	50301	79169978	0.3	0.3	0.2	0.2	0	0.41	0.9468	0.0036	0.9964	1.9739	255	261	516	10684953	11720181	8017713	8362887	101	38785835	0.26	0.28	0.22	0.23	0	0.45	0.9276	0.0928	0.9144	1.9768	40619	148	147	295	150698	123684	144845	148851	568078	0.28	0.23	0.24	0.26	0.49	0.8653	0.3073	0.7529	1.934	0	5988037	6726968	4480040	4709656	101	21904802	0.25	0.3	0.22	0.23	0	0.45	0.9064	0.1628	0.8571	1.9544	0	95	92	187	143933	141082	117364	120832	523211	0.27	0.25	0.23	0.24	0	0.48	0.8818	0.2378	0.8037	1.9558	0	2155473	2265833	1480199	1513292	0	7414797	0.27	0.3	0.21	0.22	0	0.43	0.9108	0.1333	0.8828	1.9635	0	3	2	5	60	90	98	115	363	0.17	0.25	0.27	0.32	0	0.59	0.8869	0.2973	0.757	1.9544	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3749	5313	1348	2317	3280	5122	3090	2825	3277	3363	2745	4908	3034	1936	2339	3200	2865	3851	3407	3104	5585	1743	3350	2906	5515	3128	1415	2776	1771	3582	2987	2714	2365	1804	3306	3613	2758	3786	2125	4312	3889	1836	5300	3702	2934	2142	2942	4091	2328	2212	1523	2468	1858	3288	3175	3612	772	2301	2559	1080	2903	1174	2406	1335
GCF_000003025.6	NC_010454	NC_010454.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 12; Sscrofa11.1; whole genome shotgun sequence.	16049575	16120884	14646622	14683047	102621	61602749	0.26	0.26	0.24	0.24	0	0.48	0.9506	0.0035	0.9965	1.9975	704	705	1409	9669141	10748702	9508830	9876524	0	39803197	0.23	0.24	0.26	0.27	0	0.53	0.9201	0.1021	0.9062	1.9776	106629	501	472	973	343025	290724	441462	433391	1508602	0.24	0.2	0.28	0.28	0.56	0.861	0.3089	0.7513	1.9316	27	5479759	6233408	5143732	5382684	0	22239583	0.21	0.25	0.26	0.28	0	0.54	0.8842	0.2176	0.8167	1.9375	22830	113	132	245	141022	138942	149933	148871	578768	0.24	0.22	0.27	0.27	0	0.54	0.8789	0.2387	0.8026	1.9552	0	631227	678574	605452	622962	0	2538215	0.23	0.25	0.25	0.26	0	0.52	0.8995	0.1758	0.8495	1.968	0	21	23	44	585	759	834	1050	3228	0.18	0.24	0.26	0.32	0	0.58	0.8796	0.2472	0.7879	1.9626	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9108	12950	2547	5195	8955	16997	9829	4130	10274	10428	4218	9567	6903	5074	4914	7345	6594	11593	8689	5147	19578	4920	10901	5836	16775	10153	3390	5146	3052	10009	8307	5888	6809	2482	6925	10447	8336	14426	5605	15938	12153	7268	7444	12773	9862	3834	10180	8596	5387	5290	4010	6839	2515	10180	9422	10917	1386	8027	7474	2988	6630	1667	6062	3949
GCF_000003025.6	NC_010455	NC_010455.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 13; Sscrofa11.1; whole genome shotgun sequence.	62403274	62703699	41532393	41595198	100026	208334590	0.3	0.3	0.2	0.2	0	0.4	0.9458	0.0032	0.9968	1.9702	828	813	1641	33031584	36477123	23360170	24229887	203	117098967	0.27	0.29	0.22	0.22	0	0.44	0.9249	0.0959	0.9114	1.9721	284544	544	593	1137	509939	439962	501921	508555	1960377	0.27	0.23	0.24	0.26	0.5	0.8641	0.3057	0.7542	1.9403	0	18988841	21300049	13436861	13980532	3	67706286	0.26	0.3	0.22	0.23	0	0.45	0.8971	0.1775	0.8468	1.9486	0	213	165	378	289481	282423	214814	218617	1005335	0.28	0.26	0.22	0.24	0	0.46	0.878	0.2463	0.7977	1.9534	1466	4028623	4354319	2628593	2681284	0	13692819	0.28	0.3	0.21	0.21	0	0.42	0.9096	0.1303	0.8847	1.9618	124860	3	1	4	58	72	74	86	290	0.2	0.25	0.26	0.3	0	0.55	0.8902	0.1956	0.8342	1.9785	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14640	17293	4784	8905	12106	17469	11650	9041	11686	13552	9348	15611	10862	4498	8376	10246	9956	14797	11621	10309	21812	6271	12030	10006	20093	11276	5579	9760	6604	12806	10728	10013	8025	5912	11757	11134	9964	13187	7335	14965	13030	5486	15246	12327	11591	6669	10079	13463	8655	8637	3846	5499	5826	12598	11096	14150	2971	6285	6087	3191	10702	3726	9060	3938
GCF_000003025.6	NC_010456	NC_010456.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 14; Sscrofa11.1; whole genome shotgun sequence.	40152606	40294063	30645165	30663408	204	141755446	0.28	0.28	0.22	0.22	0	0.43	0.9476	0.0021	0.9979	1.9868	775	756	1531	23893784	26620644	19010977	19782814	0	89308219	0.25	0.27	0.23	0.24	0	0.48	0.9249	0.0914	0.9151	1.9793	378118	535	511	1046	440852	368292	478256	483672	1771072	0.26	0.22	0.25	0.27	0.52	0.8631	0.3057	0.7545	1.9377	0	13617264	15397981	10845583	11317010	0	51177838	0.24	0.28	0.23	0.24	0	0.47	0.8988	0.175	0.8483	1.959	0	165	171	336	248654	247836	211961	218532	926983	0.27	0.24	0.24	0.25	0	0.48	0.8791	0.2446	0.7983	1.9583	0	3155708	3457098	2322253	2391002	0	11326061	0.27	0.29	0.22	0.23	0	0.45	0.9086	0.1435	0.8744	1.9677	0	8	3	11	138	207	206	263	814	0.17	0.26	0.25	0.32	0	0.58	0.8811	0.3238	0.7346	1.9532	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12163	15699	3593	7192	10767	17620	10958	6704	11029	12507	6857	13732	9196	4925	6837	8665	8456	13461	9775	7662	20407	5691	11499	8202	18569	10995	4429	7822	4628	11975	9440	7978	7452	4220	9760	10964	9309	13762	6381	15696	12777	6333	12185	12691	10079	5399	10260	11955	6987	7083	4137	6415	4120	12045	11066	13210	2164	7455	7151	3141	8738	2844	7907	4095
GCF_000003025.6	NC_010457	NC_010457.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 15; Sscrofa11.1; whole genome shotgun sequence.	42120824	42254409	27977954	28009338	50200	140412725	0.3	0.3	0.2	0.2	0	0.4	0.9447	0.0021	0.9979	1.9701	534	456	990	21497384	23607029	14822643	15363690	100	75290846	0.27	0.29	0.22	0.23	0	0.44	0.9249	0.0911	0.9155	1.9676	85964	339	299	638	342183	282878	308484	318266	1251811	0.28	0.23	0.23	0.25	0.49	0.8643	0.3133	0.7491	1.9364	0	10633935	11874191	7470240	7757313	100	37735779	0.27	0.31	0.21	0.22	0	0.42	0.8985	0.1675	0.8545	1.9409	0	137	104	241	182777	181366	131716	133893	629752	0.29	0.26	0.22	0.23	0	0.45	0.8795	0.2462	0.7957	1.9482	0	1807444	1932881	1155401	1184185	0	6079911	0.28	0.31	0.2	0.21	0	0.41	0.9087	0.1422	0.8757	1.9539	0	4	3	7	86	129	131	158	504	0.17	0.26	0.26	0.31	0	0.57	0.8746	0.3247	0.7323	1.9561	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9743	12083	3141	5566	7624	10404	6958	6087	7034	8398	6596	10673	7632	3118	5587	6621	6405	8591	7176	6764	13149	4125	7543	6388	12445	6652	3785	6997	4205	8046	6356	6281	4625	4439	7925	6595	6168	7555	4529	8638	7917	3458	11528	7097	6535	4459	5913	9382	5168	5327	2493	3655	4473	7468	7323	9060	2307	3925	3992	1912	7365	3126	6246	2514
GCF_000003025.6	NC_010458	NC_010458.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 16; Sscrofa11.1; whole genome shotgun sequence.	23934409	23772269	16141603	16095999	0	79944280	0.3	0.3	0.2	0.2	0	0.4	0.9454	0.0048	0.9952	1.9728	273	265	538	12810244	13953288	9034408	9312681	0	45110621	0.27	0.29	0.22	0.22	0	0.44	0.9262	0.0888	0.9181	1.9703	126333	144	154	298	126554	106038	120778	122408	475778	0.28	0.23	0.24	0.25	0.49	0.8653	0.3104	0.7503	1.939	0	5522972	6128784	3963289	4112398	0	19727443	0.27	0.31	0.21	0.22	0	0.43	0.9038	0.1567	0.8625	1.9471	0	102	86	188	153091	151763	116748	120302	541904	0.28	0.26	0.23	0.24	0	0.46	0.8799	0.242	0.8008	1.9545	0	2699024	2918820	1833006	1881119	0	9331969	0.28	0.3	0.21	0.22	0	0.43	0.9113	0.1211	0.8924	1.9637	0	3	2	5	62	99	90	110	361	0.17	0.27	0.25	0.3	0	0.55	0.8789	0.3371	0.722	1.9608	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3430	4233	1203	2157	2821	4166	2720	2274	2846	3125	2320	4172	2692	1217	1991	2511	2438	3214	2817	2651	4576	1519	2761	2653	4529	2638	1312	2333	1609	3174	2585	2304	1958	1445	2808	2869	2403	3064	1838	3486	3063	1507	4082	2912	2371	1752	2324	3382	1981	2055	1095	1640	1396	3110	2468	3467	732	1761	1678	864	2693	1088	2369	1063
GCF_000003025.6	NC_010459	NC_010459.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 17; Sscrofa11.1; whole genome shotgun sequence.	17458177	17592436	14137010	14156058	150400	63494081	0.27	0.28	0.22	0.22	0	0.45	0.943	0.0045	0.9955	1.9905	410	365	775	9371690	10401244	7935840	8239687	0	35948461	0.24	0.26	0.25	0.25	0	0.5	0.9232	0.0922	0.9144	1.9797	28751	293	254	547	195962	162154	235495	236498	830109	0.25	0.21	0.27	0.28	0.54	0.8606	0.3131	0.749	1.9314	0	5579876	6238515	4603638	4782118	0	21204147	0.23	0.26	0.25	0.26	0	0.51	0.8934	0.1902	0.8375	1.9494	0	83	82	165	92370	90554	88459	89922	361305	0.26	0.23	0.25	0.26	0	0.51	0.8786	0.252	0.793	1.9588	0	1093658	1190867	849945	877135	0	4011605	0.25	0.28	0.23	0.24	0	0.47	0.9066	0.1602	0.862	1.9736	0	5	0	5	62	103	92	103	360	0.17	0.29	0.26	0.29	0	0.54	0.8693	0.3084	0.7488	1.9682	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5308	7472	1460	3116	5090	8933	5245	2513	5324	5797	2680	5711	4138	2718	3003	4180	3628	6408	4444	3120	10021	2593	5560	3497	8825	5184	1787	3201	1720	5564	4218	3426	3557	1573	4171	5582	4416	7240	2978	8625	6423	3588	4775	6825	5039	2255	5391	5080	2997	3054	2275	3890	1557	5636	5311	6078	803	4222	4155	1585	3917	1007	3318	2036
GCF_000003025.6	NC_010460	NC_010460.4	Sus scrofa isolate TJ Tabasco breed Duroc chromosome 18; Sscrofa11.1; whole genome shotgun sequence.	15948857	15919966	12063281	12050867	0	55982971	0.28	0.28	0.22	0.22	0	0.43	0.9497	0.0014	0.9986	1.9861	291	326	617	10253710	11336232	8056547	8392598	0	38039087	0.25	0.27	0.23	0.24	0	0.48	0.9239	0.0977	0.9101	1.9785	25591	205	205	410	157639	138884	187142	184104	667769	0.25	0.22	0.26	0.27	0.53	0.8626	0.3029	0.7562	1.935	0	6083181	6863317	4826956	5052685	0	22826139	0.24	0.28	0.24	0.25	0	0.49	0.8975	0.1842	0.842	1.9506	0	72	95	167	114945	114335	101348	101188	431816	0.26	0.24	0.24	0.25	0	0.49	0.8806	0.2386	0.8023	1.9588	0	1683229	1797568	1157580	1197340	0	5835717	0.26	0.28	0.22	0.23	0	0.45	0.9095	0.1449	0.8737	1.968	0	6	11	17	238	284	306	398	1226	0.19	0.23	0.25	0.32	0	0.57	0.8776	0.2357	0.8001	1.9669	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4423	5459	1303	2796	3947	6146	4275	2478	4386	4846	2520	4602	3338	2169	2582	3316	3216	5189	3857	2970	7842	2213	4385	2864	6891	4207	1501	2852	1719	4111	3434	3055	2964	1466	3609	3879	3538	5900	2410	6525	5038	2549	3989	5028	4042	2030	4229	4225	2587	2535	1691	2898	1459	4874	4367	4835	615	3001	3089	1262	2925	793	2647	1560
GCF_000003025.6	NC_010461	NC_010461.5	Sus scrofa isolate TJ Tabasco breed Duroc chromosome X; Sscrofa11.1; whole genome shotgun sequence.	37468889	37547506	25353964	25408542	160694	125939595	0.3	0.3	0.2	0.2	0	0.4	0.9449	0.0021	0.9979	1.9723	523	477	1000	15791429	17478029	11661754	11987874	17637	56936723	0.26	0.28	0.23	0.24	0	0.47	0.9219	0.1064	0.9036	1.9722	76436	370	316	686	285602	238446	281806	288873	1094727	0.27	0.22	0.24	0.26	0.5	0.8655	0.3073	0.7531	1.9414	0	8920876	10012968	6389713	6575692	0	31899249	0.25	0.29	0.22	0.23	0	0.46	0.8962	0.1945	0.835	1.945	0	112	120	232	132799	133107	105483	109058	480447	0.27	0.25	0.23	0.25	0	0.48	0.8784	0.2616	0.7864	1.9524	0	1943223	2139445	1436736	1473555	0	6992959	0.27	0.29	0.22	0.22	0	0.44	0.9108	0.1453	0.8732	1.9656	0	4	4	8	109	161	144	163	577	0.19	0.28	0.25	0.28	0	0.53	0.8805	0.2579	0.7837	1.9778	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8321	10272	2613	4909	6755	11016	6845	4961	6501	6901	5262	9634	5786	2516	4770	5562	5808	7718	6224	5502	11493	3843	6833	6295	11154	6247	3142	5344	3432	7306	5668	5233	4543	3143	5901	6238	5124	7471	4012	9441	7388	3407	8684	7144	5550	3667	6012	7359	4067	4332	2240	3257	3109	7311	6285	8032	1477	3588	3836	1936	6020	1836	4622	2426
GCF_000003025.6	NC_010462	NC_010462.3	Sus scrofa isolate TJ Tabasco breed Duroc chromosome Y; Sscrofa11.1; whole genome shotgun sequence.	4465465	4375120	3376856	3350872	27979515	43547828	0.1	0.1	0.08	0.08	0.64	0.15	0.9451	0.0141	0.986	1.2407	52	50	102	915451	1064444	759991	789475	81713	3611074	0.26	0.28	0.22	0.23	0.01	0.45	0.9225	0.1028	0.9051	1.9739	0	35	32	67	28374	24469	26344	25399	104586	0.28	0.24	0.23	0.25	0.48	0.8701	0.2918	0.7661	1.9406	0	429278	531681	344400	359656	45300	1710315	0.26	0.32	0.2	0.22	0.01	0.42	0.8946	0.1947	0.834	1.9326	0	14	15	29	18722	19909	19068	19645	77344	0.25	0.24	0.25	0.26	0	0.51	0.8786	0.2704	0.7853	1.9464	0	217162	242143	180325	185543	10613	835786	0.24	0.28	0.23	0.24	0	0.47	0.9093	0.1558	0.8629	1.972	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	688	709	283	580	641	766	745	634	624	703	726	1072	684	302	477	536	929	684	564	677	832	441	398	710	1015	577	338	589	312	706	369	568	343	311	690	463	574	600	334	683	593	303	900	496	422	379	452	805	392	496	238	274	285	817	561	1015	121	278	329	193	655	150	402	304
NA	NC_000845	NC_000845.1	Sus scrofa mitochondrion; complete genome.	5766	4292	4353	2202	0	16613	0.35	0.26	0.26	0.13	0	0.39	0.9253	0.4747	0.6251	1.927	28	9	37	5202	4177	3882	2190	0	15451	0.33	0.29	0.21	0.17	0	0.38	0.8748	0.3935	0.692	1.9096	52	5	1	6	1332	1327	1067	669	4395	0.31	0.31	0.23	0.14	0.38	0.8683	0.5437	0.6092	1.884	43	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	14	8	22	489	461	267	294	1511	0.32	0.3	0.18	0.19	0	0.37	0.8694	0.3018	0.7488	1.9152	1	2	2	958	589	554	430	2531	0.38	0.23	0.22	0.17	0	0.39	0.9116	0.366	0.6944	1.9359	20	4	50	22	40	6	28	81	23	1	17	28	39	5	7	40	14	9	54	50	18	30	15	13	1	25	100	14	29	43	59	16	9	66	57	19	30	23	25	29	9	5	28	21	6	21	17	1	4	9	3	3	40	15	0	34	0	0	2	4	27	5	38	14