GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	fr_gene_N Frequency of 'N' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_N Number of 'N' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_N Number of 'N' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000001735.4	NC_003070	NC_003070.9	Arabidopsis thaliana chromosome 1 sequence.	9709674	9697113	5435374	5421151	163958	30427270	0.32	0.32	0.18	0.18	0.01	0.36	0.6021	0.002	0.998	1.9389	1593	1613	3206	1966037	2221907	1277541	1404805	0	6870290	0.29	0.32	0.19	0.2	0	0.39	0.9059	0.1666	0.8525	1.9538	11911	1318	1335	2653	954080	898111	683167	799936	3335294	0.29	0.27	0.2	0.24	0	0.44	0.8735	0.2998	0.7574	1.9552	64	486483	713939	280742	300305	1781469	0.27	0.41	0.16	0.17	0	0.33	0.8512	0.3833	0.6983	1.8623	207	238	445	65986	66352	44394	42217	0	218949	0.3	0.31	0.2	0.19	0	0.39	0.8793	0.2742	0.7749	1.9336	1247	4782	6879	3291	2947	17899	0.25	0.39	0.19	0.17	0	0.35	0.8539	0.4365	0.6685	1.8746	0	32	26	58	795	999	1099	1380	4273	0.18	0.23	0.26	0.32	0	0.58	0.8817	0.2729	0.7701	1.9578	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27831	33932	11059	17873	17529	31270	25732	22357	14226	17497	23302	34937	21422	9160	15573	21121	26562	18408	23204	23490	14579	19530	18643	33540	17800	11712	11876	25030	15522	23916	20240	25050	13714	14310	18295	16412	10776	6148	13694	10593	15006	4948	32183	10034	11667	26363	10834	25840	14537	16285	10839	8924	14307	17167	14093	16752	4805	6959	9344	9379	23524	6034	11496	9007
GCF_000001735.4	NC_003071	NC_003071.7	Arabidopsis thaliana chromosome 2; partial sequence.	6541183	6513873	3631288	3644111	369079	20699534	0.32	0.31	0.18	0.18	0.02	0.35	0.7999	0.0039	0.9962	1.9318	14	7	21	1899	1798	893	1059	2366	8015	0.24	0.23	0.11	0.12	0.3	0.23	0.8232	0.35	0.7422	1.6646	180	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	57	50	36	14	37	194	0.29	0.31	0.16	0.04	0.2	0.21	0.7992	0.8027	0.5027	1.598	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	0	2	137	98	45	41	227	548	0.23	0.2	0.09	0.08	0.4	0.16	0.7703	0.1911	0.8311	1.5423	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_000001735.4	NC_003074	NC_003074.8	Arabidopsis thaliana chromosome 3; partial sequence.	7484757	7448059	4258333	4262704	5966	23459819	0.32	0.32	0.18	0.18	0	0.36	0.631	0.003	0.997	1.9453	3259	3285	6544	3819693	4315675	2465484	2724385	0	13325237	0.29	0.32	0.19	0.2	0	0.39	0.904	0.1779	0.8444	1.9515	14127	2644	2759	5403	1884878	1787378	1339141	1570486	6581883	0.29	0.27	0.2	0.24	0	0.44	0.8746	0.3012	0.7566	1.9542	0	934926	1364406	531181	577189	3407702	0.27	0.41	0.16	0.17	0	0.33	0.8513	0.388	0.6956	1.8603	439	445	884	101863	107555	69226	64124	0	342768	0.3	0.31	0.2	0.19	0	0.39	0.8735	0.2924	0.7626	1.9292	1975	8719	12116	5246	5242	31323	0.27	0.39	0.17	0.17	0	0.34	0.8419	0.4067	0.6853	1.8634	0	59	33	92	1285	1637	1720	2163	6805	0.19	0.24	0.25	0.32	0	0.57	0.8887	0.2716	0.77	1.9643	2	0	2	494	499	439	540	0	1972	0.25	0.24	0.24	0.27	0	0.51	0.8898	0.1021	0.9066	1.9946	54750	67529	21797	35440	34004	60959	49149	44304	27761	34338	45272	69001	43107	18425	31564	41359	53665	35802	45411	48008	27532	39608	36251	66525	33138	23069	24057	49573	31068	47810	40572	50111	26497	28519	35709	32327	21572	11973	27231	19867	28449	9500	64159	19775	22744	52320	21056	50894	29616	32517	22091	17558	29844	33640	27250	33086	9522	13285	18212	18497	45899	12103	22565	17764
GCF_000001735.4	NC_003075	NC_003075.7	Arabidopsis thaliana chromosome 4; partial sequence.	5940546	5914038	3371349	3356091	3030	18585054	0.32	0.32	0.18	0.18	0	0.36	0.7733	0.0045	0.9955	1.9443	1892	1810	3702	2178341	2451434	1379570	1531017	0	7540362	0.29	0.32	0.19	0.2	0	0.39	0.9032	0.1782	0.8445	1.9498	14924	1540	1492	3032	1055173	1006952	745929	873350	3681404	0.29	0.27	0.2	0.24	0	0.44	0.8742	0.2989	0.7582	1.9539	31	567753	804201	306969	339761	2018684	0.27	0.41	0.16	0.17	0	0.32	0.85	0.3851	0.6978	1.8575	259	252	511	58812	60995	39812	38293	0	197912	0.29	0.31	0.2	0.2	0	0.4	0.8725	0.3138	0.7494	1.9284	375	6638	8855	3685	4002	23180	0.28	0.39	0.16	0.17	0	0.33	0.8491	0.3772	0.7065	1.8628	0	28	28	56	825	1016	1035	1312	4188	0.2	0.24	0.25	0.31	0	0.56	0.8869	0.2521	0.7845	1.9672	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30331	37387	12276	19492	18262	33336	26595	25048	15115	19928	25798	38117	23866	10165	17591	23590	29649	20054	25746	27313	14989	21936	20938	37060	18470	12991	13621	27899	18270	26625	22467	27959	14782	16259	20147	17434	11964	6622	15551	11072	15682	5138	35800	10579	13067	29388	11610	28307	17601	18094	12225	9524	16839	18693	15108	18747	5834	7761	10264	10136	25980	7338	13011	9824
GCF_000001735.4	NC_003076	NC_003076.8	Arabidopsis thaliana chromosome 5; partial sequence.	8621974	8652238	4832253	4858759	10278	26975502	0.32	0.32	0.18	0.18	0	0.36	0.9489	0.0045	0.9955	1.942	946	914	1860	1164440	1332303	766259	838129	0	4101131	0.28	0.32	0.19	0.21	0	0.4	0.906	0.1698	0.8501	1.9547	5488	795	773	1568	565061	534758	412008	474831	1986658	0.29	0.27	0.2	0.24	0	0.44	0.8737	0.2975	0.7592	1.9557	0	300622	445152	174398	187484	1107656	0.27	0.41	0.16	0.17	0	0.33	0.8518	0.3845	0.6975	1.8634	107	106	213	25057	26968	16953	16545	0	85523	0.3	0.31	0.2	0.19	0	0.39	0.872	0.3129	0.7519	1.9225	1792	5660	6270	3268	3101	18299	0.28	0.37	0.17	0.18	0	0.35	0.8657	0.3253	0.7417	1.8915	241	20	20	40	590	703	766	958	3017	0.2	0.23	0.25	0.32	0	0.57	0.8863	0.2378	0.7945	1.969	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16624	20249	6482	10372	10255	18220	14888	13046	8768	10561	13295	20309	13138	5431	9180	12607	16215	10946	13914	13847	8914	11240	11340	19874	10575	7215	7183	14936	9115	13994	12083	14796	8477	8444	10905	9689	6710	3890	8124	6325	8952	2978	18717	5948	7078	15200	6356	15573	8745	9812	6870	5132	8506	10560	8706	10235	2939	4340	5678	5559	13677	3863	6984	5428
NA	NC_037304	NC_037304.1	Arabidopsis thaliana ecotype Col-0 mitochondrion; complete genome.	102130	100929	82530	82219	0	367808	0.28	0.27	0.22	0.22	0	0.45	0.9522	0.0078	0.9922	1.9921	32	26	58	14221	14924	12054	13371	0	54570	0.25	0.29	0.21	0.25	0	0.46	0.9015	0.225	0.8105	1.9688	134	18	12	30	7456	8661	5836	6127	28080	0.27	0.31	0.2	0.22	0	0.42	0.8958	0.234	0.8063	1.9542	134	4157	3751	3787	4273	15968	0.26	0.23	0.24	0.27	0	0.51	0.9247	0.1094	0.8079	1.9947	21	27	48	490	450	342	415	0	1697	0.29	0.26	0.21	0.25	0	0.46	0.826	0.4815	0.6454	1.8912	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	14	8	22	387	454	371	477	1689	0.23	0.27	0.22	0.28	0	0.5	0.8938	0.2193	0.8093	1.9822	0	3	3	1375	1141	1184	1522	0	5222	0.26	0.21	0.24	0.29	0	0.53	0.9146	0.1874	0.8312	1.9902	219	162	161	156	127	116	213	310	118	160	207	259	152	79	145	119	192	116	271	367	94	196	110	204	79	113	132	186	214	214	186	224	107	181	112	103	67	89	90	113	112	69	237	92	86	171	125	153	96	190	122	76	241	164	103	141	32	76	79	102	188	56	41	135
NA	NC_000932	NC_000932.1	Arabidopsis thaliana chloroplast; complete genome.	48546	49866	28496	27570	0	154478	0.31	0.32	0.18	0.18	0	0.36	0.9345	0.0299	0.9705	1.9449	51	78	129	33566	33168	19398	22799	0	108931	0.29	0.3	0.19	0.23	0	0.42	0.8944	0.2189	0.8108	1.9447	73	30	53	83	24132	24720	13419	15336	77607	0.31	0.32	0.17	0.21	0	0.37	0.8874	0.2592	0.7863	1.9223	73	2708	2496	1188	1440	7832	0.34	0.32	0.15	0.19	0	0.34	0.9007	0.1372	0.7848	1.915	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	18	19	37	622	702	659	806	2789	0.22	0.25	0.24	0.29	0	0.53	0.8787	0.2244	0.8143	1.9677	3	4	7	2300	1679	2110	2840	0	8929	0.26	0.2	0.22	0.31	0	0.54	0.911	0.3005	0.7408	1.9767	584	339	496	523	359	333	615	1117	302	445	968	1025	401	137	404	310	562	197	526	1063	164	557	187	820	211	237	376	513	781	700	410	573	166	702	406	190	146	193	176	209	131	118	1136	164	83	516	284	454	246	456	207	137	879	408	164	279	32	118	130	329	725	70	23	351