GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_933775445.1	NC_065872	NC_065872.1	Argentina anserina chromosome 1; drPotAnse1.1; whole genome shotgun sequence.	7632486	7619433	4723446	4740416	500	24716281	0.31	0.31	0.19	0.19	0.38	0.9507	0.0026	0.9974	1.9601	1396	1209	2605	2576492	2892273	1684610	1873112	9026487	0.27	0.31	0.2	0.22	0.42	0.9117	0.1697	0.849	1.964	82548	1015	1069	2084	782017	740961	586433	696704	2806115	0.28	0.27	0.2	0.25	0.45	0.8735	0.3039	0.755	1.9536	0	832961	1106677	482418	534706	2956762	0.27	0.4	0.16	0.18	0.33	0.8595	0.3614	0.7142	1.8753	85	75	160	27389	31764	19165	21214	99532	0.28	0.3	0.2	0.22	0.42	0.8762	0.3401	0.7276	1.9378	0	81914	97424	44821	54325	278484	0.27	0.4	0.15	0.18	0.33	0.8658	0.3629	0.711	1.8738	19	17	36	525	634	677	844	2680	0.2	0.24	0.25	0.32	0.57	0.885	0.2401	0.7967	1.967	234	0	234	30827	28151	31776	38760	129514	0.24	0.22	0.25	0.29	0	0.54	0.8993	0.1224	0.8856	1.9899	23974	29903	8936	15021	17196	26743	19917	19842	13671	16021	20460	26253	17482	5282	14120	15624	18094	17388	18127	19861	15781	15225	15347	26113	17243	11101	9388	23053	13856	18903	14574	18722	11614	12161	14445	14977	10054	7930	11181	12484	12951	4996	24066	11832	11831	20015	12292	18520	12079	14570	8042	6871	10557	13642	14412	13825	4276	5624	7507	5219	19347	5108	10690	6028
GCF_933775445.1	NC_065873	NC_065873.1	Argentina anserina chromosome 2; drPotAnse1.1; whole genome shotgun sequence.	9205178	9532275	5713577	5762547	0	30213577	0.3	0.32	0.19	0.19	0.38	0.9455	0.0217	0.9786	1.9578	1578	1623	3201	3146427	3594950	2087722	2318678	11147777	0.27	0.31	0.19	0.22	0.41	0.9133	0.1706	0.8483	1.9633	56936	1414	1443	2857	1079127	1033187	825442	965813	3903569	0.28	0.27	0.2	0.25	0.45	0.8742	0.3028	0.756	1.9539	0	1098142	1474862	636025	706033	3915062	0.27	0.4	0.16	0.18	0.33	0.8592	0.361	0.714	1.8753	79	90	169	34092	38234	23859	26061	122246	0.27	0.3	0.2	0.23	0.42	0.8767	0.3273	0.7359	1.9423	0	55313	67685	31535	37180	191713	0.27	0.4	0.15	0.18	0.33	0.8642	0.3695	0.7087	1.8729	24	32	56	788	995	1050	1299	4132	0.19	0.24	0.26	0.32	0.57	0.8763	0.273	0.7731	1.9594	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	33105	41073	12845	20890	24354	36631	28879	27868	19423	22060	28731	36524	24646	7422	19604	21882	25992	24106	25786	27364	22066	20956	21865	36182	24672	15370	13028	31871	18843	25995	20105	26601	16064	16638	19998	20769	13906	11435	15477	17865	17701	7346	32350	16378	16505	28025	16931	24999	16550	19652	11010	9386	14512	19490	19802	19931	5780	8048	10307	7372	26531	6700	14557	8369
GCF_933775445.1	NC_065874	NC_065874.1	Argentina anserina chromosome 3; drPotAnse1.1; whole genome shotgun sequence.	11021844	10808774	6659842	6653639	200	35144299	0.31	0.31	0.19	0.19	0.38	0.95	0.0102	0.9899	1.9572	1737	1714	3451	3727897	4224893	2411902	2663817	13028509	0.28	0.32	0.19	0.22	0.41	0.9124	0.1716	0.8476	1.9603	56335	1545	1491	3036	1165181	1111047	864420	1010124	4150772	0.28	0.27	0.2	0.24	0.44	0.8739	0.297	0.7599	1.9532	2080	1356697	1766146	787109	857781	4767733	0.27	0.4	0.16	0.17	0.33	0.8605	0.3477	0.7229	1.876	103	121	224	40261	47015	28274	31063	146613	0.27	0.31	0.2	0.22	0.42	0.876	0.3324	0.7334	1.9385	0	67603	87662	36712	47506	239483	0.27	0.4	0.15	0.18	0.33	0.8643	0.3849	0.6955	1.8738	35	34	69	1000	1215	1271	1573	5059	0.2	0.24	0.25	0.31	0.56	0.8832	0.2555	0.7831	1.9672	1	0	1	37	25	32	25	119	0.31	0.21	0.27	0.21	0	0.48	0.8617	0.3164	0.7285	1.9793	35580	43846	13693	22516	25744	37199	29044	30437	19876	23746	31426	39649	27011	7648	20997	23504	27652	25163	27624	30649	22667	22291	22561	37804	25390	16392	14630	34793	21116	27693	21698	28971	16716	18604	22290	21515	14503	11656	16459	17846	18644	6934	35341	16641	17292	29226	17399	27097	17757	21486	11030	8782	16383	20227	21194	21895	6468	8208	9789	7674	29184	7559	15655	8858
GCF_933775445.1	NC_065875	NC_065875.1	Argentina anserina chromosome 4; drPotAnse1.1; whole genome shotgun sequence.	8662333	8564952	5286291	5258489	500	27772565	0.31	0.31	0.19	0.19	0.38	0.9473	0.0083	0.9917	1.9578	1373	1380	2753	2917688	3313798	1901224	2109854	10242564	0.28	0.31	0.19	0.22	0.41	0.9133	0.1709	0.8483	1.9615	27740	1236	1228	2464	930317	881343	703835	822093	3337588	0.28	0.27	0.2	0.25	0.45	0.8731	0.3041	0.7549	1.9532	0	1033283	1372821	591865	663641	3661610	0.27	0.4	0.16	0.18	0.33	0.8596	0.3594	0.7158	1.8747	67	85	152	29920	34859	19881	23091	107751	0.28	0.31	0.19	0.22	0.41	0.8708	0.3268	0.7384	1.9362	0	38728	49847	21662	25217	135454	0.27	0.39	0.16	0.18	0.33	0.8633	0.3482	0.7197	1.8791	20	21	41	593	725	752	971	3041	0.2	0.24	0.25	0.32	0.57	0.8869	0.2651	0.7743	1.9668	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28704	35546	10842	17623	20481	30912	24165	23892	16531	19050	24220	31303	21288	6484	16748	18658	22017	20489	21863	23580	18598	17762	18305	30548	20841	13142	11402	26604	16304	21999	17457	22182	13682	14643	17642	17662	12166	9550	13191	15029	15532	6144	27933	13961	14166	23813	14270	21976	14091	17180	9271	7702	12614	16698	17120	17579	5208	6603	8747	6247	23062	5975	12869	7060
GCF_933775445.1	NC_065876	NC_065876.1	Argentina anserina chromosome 5; drPotAnse1.1; whole genome shotgun sequence.	9006506	8904536	5489760	5457952	500	28859254	0.31	0.31	0.19	0.19	0.38	0.9507	0.0086	0.9914	1.9576	1441	1474	2915	2951177	3381766	1932975	2153181	10419099	0.28	0.31	0.19	0.22	0.41	0.9132	0.1717	0.8472	1.9612	25086	1266	1296	2562	971167	920919	734581	860289	3486956	0.28	0.27	0.2	0.25	0.45	0.8738	0.3015	0.7566	1.9534	0	1051832	1398947	604380	671515	3726674	0.27	0.4	0.16	0.18	0.33	0.8605	0.3559	0.7173	1.8765	64	94	158	29839	34204	19780	22813	106636	0.28	0.31	0.19	0.22	0.41	0.8733	0.3478	0.7228	1.9339	0	48103	62363	27487	31786	169739	0.27	0.4	0.15	0.18	0.33	0.8633	0.3708	0.704	1.8747	28	26	54	812	960	1008	1266	4046	0.2	0.24	0.25	0.31	0.56	0.8828	0.2392	0.7952	1.9687	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29624	37236	11269	18490	21759	33430	25110	24792	17245	19180	26303	33052	22275	6433	17478	19475	23030	21439	22511	24827	19600	18911	18995	32598	22020	13764	11627	28525	17052	23045	17967	23454	14287	15049	18141	18744	12333	10092	13510	15838	15873	6243	29097	14390	14529	24781	14872	22294	14700	18240	9564	8175	13047	17941	18229	18242	4975	7092	9029	6664	24277	5944	12732	7361
GCF_933775445.1	NC_065877	NC_065877.1	Argentina anserina chromosome 6; drPotAnse1.1; whole genome shotgun sequence.	11524298	11684825	7053464	7085659	700	37348946	0.31	0.31	0.19	0.19	0.38	0.9505	0.0092	0.9909	1.957	2043	2013	4056	4086991	4666237	2660396	2964881	14378505	0.28	0.32	0.19	0.22	0.41	0.9124	0.1724	0.8469	1.961	61963	1833	1807	3640	1400220	1339065	1040490	1224490	5004265	0.28	0.27	0.2	0.24	0.45	0.8738	0.2983	0.7588	1.9543	1	1517486	2000204	873551	967188	5358429	0.27	0.4	0.16	0.18	0.33	0.8603	0.3518	0.7203	1.8758	95	99	194	33096	38139	23341	25828	120404	0.28	0.31	0.19	0.23	0.42	0.8715	0.337	0.7306	1.9367	21	57767	73584	30880	37900	200131	0.26	0.4	0.15	0.18	0.34	0.8636	0.3762	0.7022	1.8757	37	42	79	1154	1440	1454	1826	5874	0.2	0.24	0.25	0.31	0.56	0.8908	0.2492	0.7871	1.9716	0	1	1	29	30	27	33	119	0.24	0.25	0.23	0.28	0	0.5	0.9099	0.1169	0.8924	1.9962	42579	53039	16381	27644	31199	46768	35831	36534	23891	28214	37734	48039	32849	9123	25465	28087	33572	30245	32880	36587	27574	27264	26837	46831	30770	19301	17205	41648	25428	33125	26174	34676	19888	22149	26525	25866	17426	14070	19720	21592	22487	8518	42405	19779	20662	36305	21821	32307	21624	26158	13348	10977	19660	24886	25488	25999	7423	9421	12058	9452	34419	8768	17997	10285
GCF_933775445.1	NC_065878	NC_065878.1	Argentina anserina chromosome 7; drPotAnse1.1; whole genome shotgun sequence.	7442518	7526205	4632388	4658743	500	24260354	0.31	0.31	0.19	0.19	0.38	0.9469	0.0084	0.9916	1.9601	1235	1199	2434	2964707	3324021	1938006	2135047	10361781	0.27	0.31	0.19	0.22	0.41	0.9128	0.1741	0.8452	1.9614	9216	1091	995	2086	782292	746855	586907	693375	2809429	0.28	0.27	0.2	0.25	0.45	0.8732	0.3047	0.7549	1.9527	0	1004584	1291785	589116	651451	3536936	0.27	0.4	0.16	0.18	0.34	0.8605	0.3607	0.7146	1.8764	68	68	136	28519	33177	19851	21736	103283	0.28	0.3	0.19	0.22	0.42	0.8741	0.3246	0.7388	1.938	0	69365	81939	42525	46618	240447	0.27	0.4	0.15	0.18	0.33	0.8662	0.354	0.7191	1.8773	20	18	38	549	698	701	867	2815	0.19	0.25	0.25	0.31	0.56	0.8928	0.2457	0.7889	1.9708	0	69	69	29300	26742	30038	37115	123195	0.24	0.22	0.25	0.29	0	0.54	0.9093	0.136	0.8746	1.9884	24037	29870	9151	15027	17250	26287	19875	20481	13831	16197	21022	26372	17814	5361	14167	15620	18095	17336	18442	20064	16089	14845	15453	25730	17453	11035	9679	23288	13735	18472	14481	19440	11324	12146	14831	14602	9944	7835	10864	12435	12694	4884	23452	11368	11802	19922	12495	18200	12281	14665	7712	6601	11066	13742	14703	14302	4444	5935	7107	5221	19429	5016	10664	5914