GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000005505.3	NC_016131	NC_016131.3	Brachypodium distachyon strain Bd21 chromosome 1; Brachypodium_distachyon_v3.0; whole genome shotgun sequence.	20176196	20112975	17347082	17335292	100000	75071545	0.27	0.27	0.23	0.23	0.46	0.9597	0.0019	0.9981	1.9952	4211	4399	8610	7899508	8997634	7033577	7146983	0	31077702	0.24	0.27	0.24	0.24	0.49	0.9162	0.125	0.8865	1.9775	20728	3591	3754	7345	2319848	2160899	2610464	2767911	9859122	0.25	0.24	0.24	0.27	0.51	0.869	0.2863	0.7672	1.9401	545	3382159	4293653	2433752	2453859	0	12563423	0.26	0.37	0.19	0.19	0.38	0.8725	0.3058	0.7522	1.9153	0	474	524	998	285894	318601	266287	267337	1138119	0.25	0.26	0.24	0.24	0	0.48	0.8792	0.2815	0.7722	1.9461	297	226441	268003	173263	171471	0	839178	0.25	0.36	0.2	0.19	0	0.39	0.8731	0.3278	0.7406	1.9162	0	86	71	157	2351	2716	2949	3615	11631	0.2	0.23	0.25	0.31	0.57	0.8825	0.2319	0.8017	1.9672	2	0	2	488	484	430	517	1919	0.26	0.26	0.22	0.26	0	0.48	0.921	0.0936	0.914	1.995	79275	96691	22568	35366	59770	105293	61879	42803	62080	54395	44685	65945	47513	38114	31891	54577	45866	72908	71898	40561	76513	42254	84376	68794	70340	47874	25628	50591	31073	52947	60253	49245	59002	28892	43454	78265	45501	42916	44822	94399	57105	51083	50691	83600	52261	46769	53901	45945	30003	41364	41579	73286	20688	43519	54321	48087	10439	44136	56542	23837	49959	11613	30957	23597
GCF_000005505.3	NC_016132	NC_016132.3	Brachypodium distachyon strain Bd21 chromosome 2; Brachypodium_distachyon_v3.0; whole genome shotgun sequence.	15795959	15805823	13724884	13703809	100100	59130575	0.27	0.27	0.23	0.23	0.46	0.9601	0.0011	0.9989	1.9955	3322	3331	6653	6251442	7085747	5554245	5646363	0	24537797	0.24	0.27	0.24	0.24	0.49	0.9167	0.1229	0.8881	1.9782	18685	2832	2866	5698	1784922	1661993	2016510	2132764	7596189	0.26	0.24	0.24	0.27	0.51	0.8687	0.2867	0.7667	1.9404	0	2681494	3362670	1940287	1958141	0	9942592	0.26	0.36	0.19	0.19	0.38	0.8728	0.3024	0.7547	1.9154	0	372	379	751	252582	280786	227706	232430	993504	0.25	0.27	0.23	0.24	0	0.48	0.881	0.2652	0.7822	1.9486	174	227108	261416	174005	174409	0	836938	0.25	0.36	0.2	0.19	0	0.39	0.8741	0.3128	0.7509	1.9195	0	68	53	121	1751	2095	2299	2874	9019	0.19	0.23	0.26	0.32	0.57	0.8868	0.2354	0.798	1.9643	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	60147	73482	17270	27213	46181	80483	47201	32812	48834	42074	33906	50454	36793	29756	24561	41730	35461	56597	55445	31216	59042	32051	64326	51204	54366	36879	19741	39525	23394	41304	46003	38236	45740	22632	33848	59954	35703	32933	34709	72992	44291	39846	39469	65171	40276	35781	41665	35656	22923	32122	32141	56510	16137	33200	41880	36947	8025	34341	43680	18217	38861	9122	23563	18395
GCF_000005505.3	NC_016133	NC_016133.3	Brachypodium distachyon strain Bd21 chromosome 3; Brachypodium_distachyon_v3.0; whole genome shotgun sequence.	15941318	15984646	13796702	13806979	110500	59640145	0.27	0.27	0.23	0.23	0.46	0.959	0.0017	0.9983	1.9952	3302	3306	6608	6163914	7003411	5455113	5562625	100	24185163	0.24	0.27	0.24	0.24	0.49	0.9162	0.127	0.8848	1.9772	25250	2814	2817	5631	1790864	1662361	2005011	2133115	7591351	0.26	0.24	0.24	0.27	0.51	0.8691	0.2871	0.7667	1.9404	77	2641561	3331621	1902605	1925573	100	9801460	0.26	0.37	0.19	0.19	0.38	0.8724	0.3037	0.7537	1.9144	6450	409	398	807	229709	257691	210307	213072	910779	0.25	0.27	0.23	0.24	0	0.48	0.8796	0.2761	0.7748	1.9481	484	236081	271781	174560	174369	0	856791	0.26	0.36	0.2	0.19	0	0.39	0.8759	0.3026	0.7578	1.919	6151	51	60	111	1600	1917	2075	2625	8217	0.19	0.23	0.25	0.32	0.57	0.8844	0.2584	0.78	1.9634	2	0	2	493	477	458	538	1966	0.25	0.21	0.26	0.27	0	0.54	0.9048	0.1477	0.8672	1.9859	60950	74149	17581	26981	46590	82151	48666	33046	47459	41980	34856	51865	37094	28387	24610	41698	36025	55455	53760	31185	59123	32860	64538	53260	54486	36412	19768	40015	23822	41912	45068	38681	44250	22263	33544	59976	35702	32737	33487	72835	44578	39024	39017	64395	39669	35864	41215	35473	23075	32455	31443	55762	16478	33841	41816	37222	7729	34156	42776	18134	39071	8581	23073	18750
GCF_000005505.3	NC_016134	NC_016134.3	Brachypodium distachyon strain Bd21 chromosome 4; Brachypodium_distachyon_v3.0; whole genome shotgun sequence.	13013908	13052360	11221491	11195226	111909	48594894	0.27	0.27	0.23	0.23	0.46	0.9585	0.0026	0.9974	1.9946	2586	2421	5007	4647458	5225379	4076495	4149437	100	18098869	0.24	0.27	0.24	0.24	0.48	0.9159	0.1261	0.8857	1.9779	26205	2088	1959	4047	1299184	1211403	1441028	1527611	5479226	0.26	0.24	0.24	0.27	0.51	0.8705	0.2805	0.7712	1.9424	0	1823267	2266052	1305522	1321133	0	6715974	0.26	0.37	0.19	0.18	0.37	0.8723	0.2972	0.7582	1.914	0	348	379	727	224090	251218	206663	207965	889936	0.26	0.27	0.23	0.24	0	0.47	0.8802	0.281	0.7726	1.9421	28	255284	295476	198045	195627	100	944532	0.25	0.36	0.2	0.19	0	0.39	0.8752	0.3079	0.7544	1.9184	0	42	51	93	1307	1655	1724	2173	6859	0.19	0.24	0.25	0.32	0.57	0.8872	0.2643	0.7764	1.9626	73	0	73	2109	2039	2061	2473	8682	0.24	0.23	0.24	0.28	0	0.52	0.9031	0.1196	0.89	1.9938	44426	53784	12487	19890	33400	57801	34396	23770	34535	30321	25091	37311	26693	20159	18081	30492	26202	39981	38858	23160	43059	23818	46938	37996	38708	26093	14843	29333	17311	30001	33523	28263	32342	16164	24046	43421	25842	22963	24629	51430	32331	26768	28674	46093	29517	25914	29242	25977	17398	24436	22168	38656	11834	24393	29955	26674	5990	24215	29966	13173	29132	6614	17167	13463
GCF_000005505.3	NC_016135	NC_016135.3	Brachypodium distachyon strain Bd21 chromosome 5; Brachypodium_distachyon_v3.0; whole genome shotgun sequence.	7596969	7580277	6726323	6725118	1449	28630136	0.27	0.26	0.23	0.23	0.47	0.9544	0.0012	0.9988	1.9973	1512	1410	2922	2696952	3045049	2430324	2474394	0	10646719	0.24	0.27	0.24	0.25	0.49	0.9166	0.1233	0.888	1.9778	6652	1187	1200	2387	752106	707043	849145	901894	3210188	0.25	0.24	0.24	0.27	0.51	0.8703	0.283	0.7697	1.9408	0	1108656	1375603	822556	828812	0	4135627	0.26	0.36	0.19	0.19	0.38	0.8735	0.2973	0.758	1.9171	0	204	173	377	125652	142267	115288	114864	498071	0.25	0.27	0.24	0.24	0	0.48	0.8795	0.2771	0.7742	1.9487	0	100077	118033	72626	71578	0	362314	0.25	0.36	0.2	0.19	0	0.38	0.8723	0.334	0.736	1.9125	0	19	26	45	691	800	815	1021	3327	0.21	0.24	0.25	0.31	0.55	0.8834	0.223	0.8077	1.9714	74	2	76	30944	27475	33574	40242	132235	0.23	0.21	0.26	0.3	0	0.56	0.9095	0.127	0.8837	1.9811	25538	30434	7453	11674	19831	33479	20121	13941	20131	18103	14263	21759	15484	12992	10454	17873	15200	23944	23288	13358	25550	13939	26919	21884	22548	15398	8590	17219	9903	17451	19124	16338	19206	9776	14282	24930	15025	13645	14313	30133	18880	16406	16434	27166	17116	15333	17472	14741	9787	13637	14258	23938	7085	14103	17622	15653	3410	14737	18395	7959	16395	3525	9395	7953
NA	NC_011032	NC_011032.1	Brachypodium distachyon chloroplast; complete genome.	41691	41360	25994	26152	1	135198	0.31	0.31	0.19	0.19	0.39	0.8518	0.007	0.993	1.962	59	70	129	25643	25364	16292	19309	0	86608	0.28	0.29	0.19	0.23	0.43	0.8958	0.2291	0.8031	1.9528	67	34	44	78	15561	16756	9606	11045	52968	0.3	0.31	0.17	0.21	0.38	0.8861	0.2735	0.7741	1.9293	67	1933	1721	916	1062	0	5632	0.34	0.3	0.16	0.19	0.35	0.901	0.1219	0.7635	1.93	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	18	20	38	680	761	705	870	3016	0.22	0.25	0.24	0.29	0.53	0.8739	0.2251	0.8107	1.968	4	4	8	2420	1742	2156	2873	9191	0.27	0.21	0.22	0.3	0	0.52	0.9094	0.3012	0.7453	1.9757	426	259	395	403	319	219	508	738	240	331	489	655	210	120	270	197	351	137	363	675	79	422	141	487	147	163	279	351	487	522	289	433	123	453	250	117	105	163	142	158	99	102	640	125	52	379	230	297	149	283	111	130	640	308	105	193	33	69	91	251	439	55	30	223