GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000184155.1	NC_020491	NC_020491.1	Fragaria vesca subsp. vesca linkage group LG1; FraVesHawaii_1.0; whole genome shotgun sequence.	6591021	6567320	4114904	4098313	1309481	22681039	0.29	0.29	0.18	0.18	0.06	0.36	0.9518	0.0038	0.9962	1.9286	1256	1314	2570	2265708	2626152	1496185	1702000	99802	8189847	0.27	0.31	0.19	0.22	0.41	0.9131	0.1705	0.8482	1.9594	8722	1173	1238	2411	921379	877564	682489	812143	2	3293577	0.28	0.27	0.2	0.25	0.45	0.8738	0.3	0.7575	1.9546	0	971754	1294822	568817	629807	81774	3546974	0.27	0.4	0.16	0.18	0.33	0.8589	0.3623	0.7139	1.8716	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27	21	48	694	859	884	1128	3565	0.19	0.24	0.25	0.32	0.56	0.885	0.2542	0.7844	1.968	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	28146	35290	10787	17652	20029	31169	23125	23780	15606	19212	23884	31402	20563	6207	16569	18500	20938	20559	21719	23954	18192	17750	17936	30568	19567	12939	11357	27705	16334	22034	17330	22637	13343	14709	17228	17620	11591	8883	13373	14115	14845	5680	28428	13193	14123	24106	14002	21882	14442	17140	9122	7545	12262	16110	16548	16327	4852	6269	8248	6527	22988	5877	12424	7136
GCF_000184155.1	NC_020492	NC_020492.1	Fragaria vesca subsp. vesca linkage group LG2; FraVesHawaii_1.0; whole genome shotgun sequence.	9648140	9638098	6009125	5995376	2018104	33308843	0.29	0.29	0.18	0.18	0.06	0.36	0.951	0.0017	0.9983	1.9265	1822	1861	3683	3423745	3969637	2268483	2542960	137012	12341837	0.27	0.31	0.19	0.22	0.41	0.9135	0.1716	0.8473	1.9593	4911	1725	1750	3475	1294674	1244924	978206	1149055	16	4666875	0.28	0.27	0.2	0.25	0.45	0.8741	0.3005	0.7574	1.9545	0	1436022	1915571	840075	924710	107777	5224155	0.27	0.4	0.16	0.18	0.33	0.8597	0.3559	0.7173	1.8743	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27	25	52	719	926	976	1221	3842	0.18	0.24	0.26	0.32	0.58	0.8735	0.287	0.7625	1.9566	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	39531	49481	15144	25095	29343	43081	34477	33437	22451	26918	34251	43598	29634	8520	23337	26520	31299	28681	30834	33541	26221	25428	25652	43070	28498	18344	15973	39338	22805	31348	23918	32652	18972	20134	24260	24551	16266	13218	18476	20589	21157	8178	39124	18956	19813	33944	20140	30113	20167	24263	12722	10312	17491	23417	23683	23906	6994	9251	11604	9024	32422	8005	17282	9919
GCF_000184155.1	NC_020493	NC_020493.1	Fragaria vesca subsp. vesca linkage group LG3; FraVesHawaii_1.0; whole genome shotgun sequence.	8116646	8167868	5067468	5067793	1459796	27879571	0.29	0.29	0.18	0.18	0.05	0.36	0.9515	0.0032	0.9968	1.9314	1625	1529	3154	3173490	3592573	2065790	2302840	181706	11316399	0.27	0.31	0.19	0.22	0.41	0.9124	0.1709	0.8478	1.959	13767	1523	1429	2952	1135410	1085421	836774	985834	0	4043439	0.28	0.27	0.2	0.24	0.45	0.8743	0.2946	0.7617	1.9546	0	1179886	1555523	683358	754511	109395	4282673	0.27	0.4	0.16	0.17	0.33	0.8598	0.3541	0.7189	1.8736	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	46	38	84	1228	1484	1537	1910	6159	0.2	0.24	0.25	0.31	0.56	0.8885	0.2393	0.7939	1.9721	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	34360	42171	13106	21687	25106	36231	28113	29617	18950	23766	30261	38703	25861	7333	20223	23267	26634	24675	27324	29590	22101	21826	21769	37165	24630	16075	14202	35063	20408	27288	21289	28479	16299	18120	22130	20823	14021	11023	16017	16675	18340	6319	34527	15780	17092	28937	17212	26775	18128	20929	10646	8237	15584	19810	20714	21023	6390	7864	9385	7552	28888	7484	15362	8530
GCF_000184155.1	NC_020494	NC_020494.1	Fragaria vesca subsp. vesca linkage group LG4; FraVesHawaii_1.0; whole genome shotgun sequence.	6722413	6727705	4217958	4196350	1428451	23292877	0.29	0.29	0.18	0.18	0.06	0.36	0.9496	0.003	0.997	1.9268	1165	1157	2322	2042531	2391864	1343625	1526633	45295	7349948	0.27	0.31	0.19	0.22	0.41	0.9127	0.1745	0.845	1.9592	4037	1086	1073	2159	805919	770727	601468	708796	38	2886948	0.28	0.27	0.2	0.24	0.45	0.873	0.3037	0.7552	1.9526	0	884233	1182718	512256	567905	41243	3188355	0.27	0.4	0.16	0.18	0.33	0.8595	0.3595	0.7157	1.873	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	20	38	543	664	705	910	2822	0.19	0.24	0.25	0.32	0.57	0.8882	0.2572	0.7786	1.9672	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24678	30754	9282	15377	17659	26563	21057	21048	13917	16744	21269	27006	18470	5288	14292	16234	18937	17587	19098	21137	15853	15468	15554	26505	17356	11213	9889	23999	14207	19136	15099	19903	11416	12595	15331	15127	9940	7807	11449	12344	13337	5054	24696	11671	12209	21029	12508	19070	12633	15103	7738	6519	11147	14683	14736	15140	4474	5606	7229	5499	20089	5062	11137	6206
GCF_000184155.1	NC_020495	NC_020495.1	Fragaria vesca subsp. vesca linkage group LG5; FraVesHawaii_1.0; whole genome shotgun sequence.	8576933	8565031	5318114	5326267	1542348	29328693	0.29	0.29	0.18	0.18	0.05	0.36	0.9521	0.0015	0.9985	1.9309	1733	1670	3403	2995827	3477814	1972131	2233071	125092	10803935	0.27	0.31	0.19	0.22	0.41	0.9132	0.1676	0.8505	1.9597	9823	1638	1567	3205	1207232	1152233	903912	1064499	14	4327890	0.28	0.27	0.2	0.25	0.45	0.8736	0.3	0.7575	1.9541	0	1307525	1742835	757618	837100	75340	4720418	0.27	0.4	0.16	0.18	0.33	0.8607	0.3541	0.7189	1.8741	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27	36	63	927	1100	1195	1484	4706	0.19	0.23	0.26	0.32	0.57	0.8805	0.2526	0.7864	1.9638	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	37054	46162	13894	22943	26885	40870	31146	30806	20819	24532	32040	41686	27342	7982	21796	24664	28105	26880	28525	31360	23913	23383	23646	40209	26588	17074	14449	36345	21627	28316	22859	29816	17669	19142	22688	22986	15140	12166	17107	19100	19345	7512	36924	17431	18190	31537	18666	27863	18550	22688	11758	9905	16366	22286	22026	21896	6318	8349	10750	8238	29856	7326	15836	8976
GCF_000184155.1	NC_020496	NC_020496.1	Fragaria vesca subsp. vesca linkage group LG6; FraVesHawaii_1.0; whole genome shotgun sequence.	11162536	11129178	6910849	6891318	2128314	38222195	0.29	0.29	0.18	0.18	0.06	0.36	0.9516	0.0029	0.9971	1.9286	2252	2231	4483	3881290	4527347	2546583	2897568	162867	14015655	0.27	0.31	0.19	0.22	0.41	0.9127	0.174	0.8454	1.9587	17717	2112	2100	4212	1594519	1534847	1181976	1394492	64	5705898	0.28	0.27	0.2	0.24	0.45	0.8733	0.2991	0.7583	1.9543	0	1652730	2206228	956548	1060099	156723	6032328	0.27	0.4	0.16	0.17	0.33	0.86	0.355	0.7184	1.8733	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	42	42	84	1213	1505	1559	1938	6215	0.2	0.24	0.25	0.31	0.56	0.8899	0.2478	0.7888	1.9701	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	47908	60207	18665	31089	35297	53333	41253	42348	27035	32579	42486	55247	37235	10070	28670	32744	38268	34908	37670	42474	30719	31219	30644	54196	34089	22332	19602	48566	29312	38040	29982	40554	22772	25084	30674	29598	19614	15689	22699	24167	25289	9387	48262	22385	23587	41930	24845	36834	24793	29665	14877	12020	22113	28630	28670	29271	8267	10773	13366	10975	39489	9528	20342	11845
GCF_000184155.1	NC_020497	NC_020497.1	Fragaria vesca subsp. vesca linkage group LG7; FraVesHawaii_1.0; whole genome shotgun sequence.	6891017	6867841	4278207	4256226	1110600	23403891	0.29	0.29	0.18	0.18	0.05	0.36	0.9512	0.0043	0.9957	1.9338	1424	1464	2888	2642237	3065311	1724525	1960257	89379	9481709	0.27	0.31	0.19	0.22	0.41	0.913	0.1714	0.8475	1.9586	16666	1339	1393	2732	1053608	1014094	778403	920522	20	3766647	0.28	0.27	0.2	0.25	0.45	0.874	0.2999	0.7584	1.9534	0	1136464	1505860	655240	727802	82346	4107712	0.27	0.4	0.16	0.18	0.33	0.8594	0.3579	0.7168	1.8726	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23	23	46	668	821	848	1077	3414	0.19	0.24	0.25	0.32	0.56	0.8868	0.2605	0.7769	1.9686	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	32443	39290	12278	19988	23260	34549	26638	27504	17685	22053	28449	35590	24272	6914	18973	21431	24526	23324	24956	27688	21163	20421	20324	34638	22235	14757	13308	32503	18892	24914	19861	26991	14926	16934	20509	19308	12971	10102	14733	15450	16919	6328	31911	14304	15708	27537	16204	24549	16763	20031	10119	8232	15039	18507	19264	19190	5941	7189	9007	7156	26553	6679	14004	7973
NA	NC_015206	NC_015206.1	Fragaria vesca subsp. vesca chloroplast; complete genome.	48400	49354	29490	28447	0	155691	0.31	0.32	0.19	0.18	0	0.37	0.9364	0.0278	0.9727	1.9522	51	79	130	33062	32722	19807	23448	0	109039	0.28	0.29	0.19	0.23	0.43	0.8964	0.2214	0.8082	1.9514	53	30	54	84	24317	24968	14003	16119	0	79407	0.3	0.31	0.17	0.21	0.39	0.8916	0.2653	0.7811	1.9293	53	2449	2254	1099	1378	0	7180	0.34	0.31	0.15	0.19	0.35	0.8919	0.1513	0.7641	1.9245	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	20	37	614	693	672	830	2809	0.22	0.25	0.24	0.3	0.54	0.8779	0.2378	0.802	1.9658	4	4	8	2338	1702	2138	2870	9048	0.26	0.2	0.23	0.31	0	0.54	0.9108	0.2788	0.7584	1.979	620	354	542	538	373	362	630	1110	321	453	982	1039	394	160	399	317	558	205	525	1005	190	584	191	854	230	261	364	555	789	676	427	596	165	715	404	209	163	222	196	218	138	110	1059	197	68	528	345	465	234	474	205	167	911	404	182	299	20	119	175	337	710	49	14	362