GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_007990345.1	NC_053424	NC_053424.1	Gossypium hirsutum isolate 1008001.06 chromosome A01; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	38871044	38904588	20867536	20950891	167500	119761559	0.32	0.32	0.17	0.17	0.35	0.9329	0.0024	0.9976	1.9331	1814	1746	3560	3025007	3474274	1738883	1918240	1500	10157904	0.29	0.33	0.19	0.19	0.38	0.901	0.1816	0.841	1.9416	43775	1173	1101	2274	824002	792952	561813	667366	2846133	0.29	0.28	0.19	0.24	0.43	0.8728	0.3043	0.7547	1.9496	0	1239254	1562573	643714	701139	1000	4147680	0.28	0.41	0.15	0.16	0.32	0.8557	0.351	0.7205	1.8571	0	593	600	1193	152265	165428	97218	100165	515076	0.3	0.31	0.2	0.19	0	0.39	0.8736	0.3098	0.7501	1.9318	0	155686	182539	77379	83230	0	498834	0.29	0.4	0.15	0.16	0	0.31	0.8556	0.3432	0.7276	1.8443	17	22	39	593	710	717	933	2953	0.2	0.24	0.24	0.32	0.56	0.8876	0.2487	0.7842	1.9707	1	0	1	37	34	41	44	156	0.24	0.22	0.26	0.28	0	0.54	0.8747	0.0775	0.9254	1.9931	24354	28226	9709	15267	17081	22869	21930	22699	12339	15757	23738	30525	19437	5124	14145	16422	19739	14976	18669	23216	12938	16420	12302	28578	14367	10263	10188	24952	15422	18627	14593	22030	9449	13574	14769	12198	8383	6982	9960	10042	11832	3325	29074	9371	11036	22772	11523	18375	12720	15850	7593	4836	14805	14871	13893	15168	4259	5128	5784	6039	22600	5692	9812	7062
GCF_007990345.1	NC_053425	NC_053425.1	Gossypium hirsutum isolate 1008001.06 chromosome A02; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	35085523	35074367	18875312	18952241	154000	108141443	0.32	0.32	0.17	0.18	0.35	0.9321	0.0022	0.9978	1.9336	1408	1432	2840	2417577	2756516	1406297	1545202	3500	8129092	0.29	0.33	0.19	0.19	0.38	0.9018	0.1869	0.8374	1.9416	4020	941	943	1884	690436	658721	467969	559015	2376141	0.29	0.28	0.19	0.24	0.43	0.8734	0.3062	0.7539	1.9486	4	1024175	1274395	545585	577703	3500	3425358	0.28	0.41	0.15	0.17	0.32	0.8562	0.3465	0.7234	1.8575	0	437	462	899	135577	148363	86323	86764	457027	0.29	0.31	0.2	0.19	0	0.39	0.873	0.3155	0.7471	1.9297	7	122569	147055	59869	67487	0	396980	0.29	0.4	0.15	0.16	0	0.3	0.8527	0.3553	0.7191	1.8396	13	11	24	361	446	419	561	1787	0.2	0.25	0.23	0.32	0.55	0.8931	0.268	0.7714	1.9713	1	0	1	48	42	29	35	154	0.31	0.27	0.19	0.23	0	0.42	0.8682	0.1604	0.8518	1.9748	20577	23853	8169	12569	13980	18480	17468	18856	10056	13248	19991	25695	15562	4590	11768	13661	15291	12632	15626	19343	10721	14375	9973	23598	11776	9034	8275	20875	12906	15721	12480	17584	7984	11249	12434	10064	7436	5814	8550	8212	9921	2792	24998	7925	9263	19043	9759	15068	10987	13493	6638	4109	12145	12572	11344	12877	3759	4362	5353	4902	18370	4943	8535	5961
GCF_007990345.1	NC_053426	NC_053426.1	Gossypium hirsutum isolate 1008001.06 chromosome A03; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	36979489	36935716	19826088	19778916	173000	113693209	0.33	0.32	0.17	0.17	0.35	0.9312	0.0018	0.9982	1.9323	1620	1678	3298	2873566	3289766	1680590	1853512	3500	9700934	0.29	0.33	0.19	0.19	0.38	0.9028	0.1837	0.8394	1.9434	3589	1089	1119	2208	793472	756598	548997	658215	2757282	0.29	0.28	0.19	0.24	0.43	0.8733	0.3037	0.7553	1.9507	1	1172569	1471234	621191	665374	3000	3933368	0.27	0.41	0.15	0.17	0.32	0.8566	0.3515	0.72	1.8602	0	495	500	995	153004	166622	95255	97216	512097	0.29	0.31	0.2	0.19	0	0.39	0.8728	0.3125	0.7487	1.9301	68	149811	176944	73931	83400	0	484086	0.29	0.4	0.15	0.16	0	0.31	0.8583	0.3468	0.7254	1.8496	12	32	44	665	798	817	1002	3282	0.2	0.24	0.25	0.31	0.56	0.882	0.231	0.8021	1.9705	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23962	27344	9498	14411	17034	22726	20917	21316	11945	15185	22819	29651	18040	5384	13468	15460	18599	15017	17871	21697	13127	16435	11884	27412	14616	10297	9557	23737	14643	18027	14389	20179	9322	12736	14150	12099	8349	7079	9971	10253	11786	3483	27912	9822	10802	21873	11821	17713	11824	14720	7834	5243	13906	14678	13736	14339	4026	5148	6087	5999	21279	5219	9392	6970
GCF_007990345.1	NC_053427	NC_053427.1	Gossypium hirsutum isolate 1008001.06 chromosome A04; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	28913514	28921290	15613498	15584520	148000	89180822	0.32	0.32	0.18	0.17	0.35	0.9284	0.0011	0.9989	1.9336	1260	1256	2516	2005808	2264631	1150035	1260018	2500	6682992	0.29	0.33	0.19	0.19	0.38	0.9016	0.1798	0.8426	1.9424	8156	817	806	1623	586756	561551	394476	466347	2009130	0.29	0.28	0.19	0.24	0.43	0.873	0.3056	0.7545	1.9481	1	769659	951533	398301	415848	1500	2536841	0.28	0.41	0.15	0.16	0.31	0.8554	0.3463	0.7238	1.8532	0	388	392	780	100227	109615	64394	67193	341429	0.29	0.31	0.2	0.19	0	0.4	0.8746	0.3086	0.7515	1.933	0	121424	141424	60557	68729	500	392634	0.29	0.4	0.14	0.16	0	0.31	0.8556	0.3467	0.7257	1.845	35	43	78	1168	1444	1425	1842	5879	0.2	0.25	0.24	0.31	0.56	0.8871	0.2603	0.7793	1.97	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16988	20116	6859	10549	11396	16153	14307	16446	8631	10694	17681	22432	13263	3931	9874	11951	13645	10718	13366	16617	8771	11474	8778	20077	9541	7319	7363	18712	10749	13215	10817	15578	6613	10080	10325	8560	5921	5091	6956	6788	8208	2374	21432	6759	7477	15841	8198	12281	8666	10908	5726	3345	11150	10631	9431	10868	2983	3459	4151	4184	16023	3879	6507	4984
GCF_007990345.1	NC_053428	NC_053428.1	Gossypium hirsutum isolate 1008001.06 chromosome A05; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	36456371	36422661	19048033	19022188	149500	111098753	0.33	0.33	0.17	0.17	0.34	0.9377	0.0011	0.9989	1.9271	2474	2656	5130	4899814	5698806	2904938	3219679	2500	16725737	0.29	0.33	0.18	0.2	0.38	0.9068	0.1702	0.8496	1.945	25366	1879	2041	3920	1455359	1394409	1020224	1203369	5073361	0.29	0.28	0.2	0.24	0.43	0.873	0.3009	0.7572	1.9521	0	1934704	2537194	1036132	1126228	1000	6635258	0.27	0.41	0.16	0.17	0.32	0.8568	0.347	0.7228	1.8613	0	515	506	1021	213554	232825	132571	140671	719621	0.29	0.31	0.19	0.2	0	0.39	0.8721	0.3197	0.7443	1.9278	0	227744	267947	105668	121185	0	722544	0.29	0.4	0.15	0.16	0	0.31	0.8574	0.3404	0.7288	1.8525	39	46	85	1241	1509	1553	1991	6294	0.2	0.24	0.25	0.32	0.56	0.8894	0.2487	0.7894	1.9674	1	12	13	5227	4807	5020	6248	21302	0.25	0.23	0.24	0.28	0	0.52	0.9083	0.1336	0.8771	1.9924	43677	49377	16817	26874	32043	40287	38666	39487	23115	29068	41399	52986	34473	9300	24993	29145	35087	27309	32872	39688	24687	29092	22015	49222	27872	18689	17442	43485	26776	34492	26506	37811	17043	23329	26467	21822	15565	13622	18345	19026	22282	6356	49911	18226	20723	39556	21318	32936	22109	27723	13270	8779	24251	27813	25528	27713	7791	8987	10153	10461	38881	10280	18631	11930
GCF_007990345.1	NC_053429	NC_053429.1	Gossypium hirsutum isolate 1008001.06 chromosome A06; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	41597323	41596503	22364677	22441335	195500	128195338	0.32	0.32	0.17	0.18	0.35	0.9328	0.0017	0.9983	1.9334	1702	1777	3479	2886752	3294578	1665067	1831263	3500	9681160	0.29	0.33	0.19	0.19	0.38	0.9015	0.1842	0.8392	1.9425	9795	1025	1124	2149	779040	745354	534010	633736	2692140	0.29	0.28	0.19	0.24	0.43	0.8728	0.3013	0.7565	1.9511	277	1158347	1454010	603498	652724	1000	3869579	0.28	0.41	0.15	0.17	0.32	0.8561	0.3487	0.7223	1.8576	0	637	595	1232	155159	168406	100779	100513	524857	0.29	0.31	0.2	0.19	0	0.39	0.8741	0.3055	0.754	1.933	0	166580	192751	79936	86776	500	526543	0.29	0.41	0.15	0.16	0	0.3	0.8544	0.353	0.7214	1.8404	15	36	51	705	909	959	1208	3781	0.19	0.24	0.25	0.32	0.57	0.8883	0.271	0.7715	1.9612	0	1	1	27	28	30	34	119	0.23	0.24	0.25	0.29	0	0.54	0.9153	0.0807	0.9233	1.9942	23228	26285	9309	14144	16349	21545	19920	21011	11843	14992	22305	28922	17759	5205	13378	15361	18372	14406	17551	21454	12059	15678	11558	26866	13640	10165	9624	23445	14583	17803	13928	19861	9037	12817	13948	11540	8105	6638	9663	9678	11165	3296	27659	8990	10511	21570	10989	17320	12202	14951	7556	4598	13966	14550	12857	14265	4096	4923	5977	5853	21405	5505	9448	6884
GCF_007990345.1	NC_053430	NC_053430.1	Gossypium hirsutum isolate 1008001.06 chromosome A07; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	32250984	32289652	17087957	17125938	148000	98902531	0.33	0.33	0.17	0.17	0.35	0.9354	0.0017	0.9983	1.9301	1827	1756	3583	3022960	3475421	1764491	1943507	2500	10208879	0.29	0.33	0.19	0.19	0.38	0.9027	0.1783	0.8433	1.9424	2608	1182	1162	2344	829236	784772	569980	676077	2860065	0.29	0.28	0.19	0.24	0.43	0.8719	0.3074	0.7533	1.9492	0	1147759	1473911	599074	649638	2000	3872382	0.27	0.41	0.15	0.16	0.32	0.8557	0.3504	0.721	1.8578	0	546	544	1090	191824	207100	118516	123991	641431	0.3	0.31	0.2	0.19	0	0.39	0.8732	0.3098	0.7504	1.9308	0	196009	230371	97459	101523	0	625362	0.29	0.4	0.15	0.16	0	0.31	0.8546	0.342	0.7277	1.8445	26	20	46	673	854	847	1070	3444	0.19	0.25	0.25	0.31	0.56	0.8861	0.2671	0.7718	1.9695	51	1	52	20279	18686	19284	24098	82347	0.25	0.23	0.24	0.28	0	0.52	0.9073	0.1288	0.8818	1.9921	24941	28492	9677	15058	17904	23002	21728	22083	12579	15918	23598	31088	19058	5310	14050	16639	19277	15130	18961	22260	12812	16563	12280	28336	14721	10838	9741	24122	15055	18990	15019	21199	9696	13333	14789	12490	8790	7612	10528	10503	11887	3519	29442	9993	11266	23033	11805	18417	12340	15835	7788	4793	13998	15123	14347	15314	4518	5089	5976	6078	22131	5915	10362	7090
GCF_007990345.1	NC_053431	NC_053431.1	Gossypium hirsutum isolate 1008001.06 chromosome A08; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	41414373	41425686	22224698	22248691	182500	127495948	0.32	0.32	0.17	0.17	0.35	0.9304	0.0007	0.9993	1.9328	1926	2007	3933	3260826	3767126	1908203	2108632	3000	11047787	0.29	0.33	0.19	0.19	0.38	0.9025	0.1804	0.8418	1.9428	11054	1274	1302	2576	906071	862719	632334	747589	3148713	0.29	0.28	0.19	0.24	0.43	0.8728	0.3048	0.7548	1.9499	0	1292267	1672485	679633	745991	2000	4392376	0.27	0.41	0.15	0.17	0.32	0.8564	0.3507	0.7205	1.8583	0	608	647	1255	178613	190224	114477	113321	596635	0.29	0.31	0.2	0.19	0	0.39	0.8744	0.2998	0.7577	1.9335	46	204851	234645	102249	108790	1000	651535	0.29	0.4	0.15	0.16	0	0.31	0.858	0.336	0.7321	1.8515	17	20	37	547	641	698	857	2743	0.2	0.23	0.25	0.31	0.57	0.8899	0.2422	0.7917	1.9677	0	7	7	2772	2522	2458	3081	10833	0.26	0.24	0.23	0.27	0	0.5	0.9059	0.1199	0.8905	1.9938	26862	31292	10917	16399	19632	25130	24150	24340	14062	17817	25568	32978	20331	6251	14967	18158	20991	17294	20464	24372	14552	17896	13778	31024	16558	12045	10777	26536	16260	20514	16638	23086	10783	14804	16093	13846	9774	8275	11512	11938	13109	4104	31695	10806	12803	24813	13109	20545	13945	17352	8882	5650	15673	17069	15915	16946	5036	5877	7057	6826	23998	6485	11722	7988
GCF_007990345.1	NC_053432	NC_053432.1	Gossypium hirsutum isolate 1008001.06 chromosome A09; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	27879170	27920852	14705969	14727485	102500	85335976	0.33	0.33	0.17	0.17	0.34	0.9325	0.0015	0.9985	1.9292	1907	1678	3585	3254640	3726338	1882532	2082683	3500	10949693	0.29	0.32	0.19	0.2	0.39	0.9043	0.1711	0.8491	1.9436	8250	1247	1246	2493	907121	864428	621175	742306	3135030	0.29	0.28	0.19	0.24	0.43	0.8724	0.3025	0.7565	1.95	0	1391611	1753055	722055	775360	2500	4644581	0.27	0.41	0.15	0.16	0.32	0.8556	0.3464	0.724	1.8569	0	391	370	761	140290	150630	84792	91663	467375	0.29	0.31	0.19	0.2	0	0.39	0.872	0.3276	0.7381	1.9278	0	160007	191290	80996	87588	0	519881	0.29	0.41	0.15	0.16	0	0.3	0.855	0.3411	0.7286	1.8401	41	30	71	1074	1285	1287	1686	5332	0.2	0.24	0.24	0.32	0.56	0.8816	0.2673	0.7739	1.9661	211	8	219	26998	25163	26596	32175	110932	0.23	0.22	0.26	0.29	0	0.54	0.904	0.0832	0.9219	1.9899	26978	31122	10484	16439	19236	25116	23606	25108	13821	17532	26225	33564	21151	5933	15254	17958	21060	16570	20206	24846	14261	18207	13457	30788	15994	11707	10654	27097	16671	20756	16530	23136	10501	14714	16366	13385	9297	8054	11054	11367	13477	3961	31801	10832	12602	25039	13036	20379	14216	17185	8710	5623	15639	16004	15406	16503	5143	5909	6719	6563	24504	6521	11540	7981
GCF_007990345.1	NC_053433	NC_053433.1	Gossypium hirsutum isolate 1008001.06 chromosome A10; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	38516273	38519081	20503938	20483395	160000	118182687	0.33	0.33	0.17	0.17	0.35	0.9314	0.0005	0.9995	1.931	1932	1775	3707	3214834	3695327	1858401	2048980	1500	10819042	0.29	0.33	0.19	0.19	0.38	0.9023	0.1804	0.842	1.9422	12221	1270	1173	2443	921017	878757	621787	743527	3165088	0.29	0.28	0.19	0.24	0.43	0.8731	0.3025	0.756	1.9495	0	1269407	1619802	664380	716582	1500	4271671	0.28	0.41	0.15	0.16	0.32	0.8554	0.3479	0.7225	1.8555	0	595	538	1133	177330	193628	114144	113849	598951	0.29	0.31	0.2	0.19	0	0.39	0.8731	0.3097	0.7504	1.9314	28	182623	216952	88993	98052	0	586620	0.29	0.4	0.15	0.16	0	0.31	0.8564	0.3466	0.7242	1.8475	36	36	72	1042	1302	1320	1663	5327	0.2	0.24	0.25	0.31	0.56	0.8919	0.2446	0.7894	1.9717	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27640	31389	10571	16600	19269	25044	23108	25333	13468	17583	27033	33958	20659	6038	15305	18640	21017	16589	21074	25357	14615	18427	13580	30691	16022	11558	11179	28286	16731	20821	16750	24182	10722	15565	16693	13389	9312	7576	11297	11363	13520	3691	32767	10468	12657	24682	13138	20650	14353	17512	8490	5302	16998	16354	15626	16641	5183	5651	6428	6581	24577	6741	11467	7837
GCF_007990345.1	NC_053434	NC_053434.1	Gossypium hirsutum isolate 1008001.06 chromosome A11; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	40492694	40502653	21507217	21499687	179500	124181751	0.33	0.33	0.17	0.17	0.35	0.9361	0.0003	0.9997	1.9305	2380	2342	4722	4221773	4849152	2485254	2726302	2500	14284981	0.29	0.33	0.19	0.2	0.38	0.9045	0.1756	0.8453	1.9445	16406	1720	1703	3423	1281422	1223369	873152	1038915	4416858	0.29	0.28	0.19	0.24	0.43	0.8728	0.3064	0.7538	1.9495	0	1583623	2048489	847688	906765	1500	5388065	0.27	0.41	0.15	0.17	0.32	0.8563	0.3514	0.7199	1.8592	0	576	560	1136	207602	226728	132132	133929	700391	0.29	0.31	0.2	0.2	0	0.39	0.8718	0.316	0.7469	1.9306	200	193948	231144	94474	98951	0	618517	0.29	0.41	0.15	0.15	0	0.3	0.8547	0.3399	0.7296	1.8437	47	29	76	1136	1335	1402	1746	5619	0.2	0.23	0.25	0.31	0.56	0.8871	0.2525	0.7868	1.9659	0	16	16	4742	4053	4320	5325	18440	0.26	0.23	0.24	0.27	0	0.51	0.8884	0.1161	0.8927	1.9957	37523	43791	15129	23020	26713	36069	32791	35009	19545	24785	37219	48046	29417	8124	21770	25611	30094	22689	28401	35780	20514	24781	19342	44448	22588	16074	15241	39369	23212	28858	23123	34634	14651	20819	22493	18992	13193	10922	15276	16080	18988	5493	46076	14893	17596	34121	18111	28702	20013	24357	12053	7596	22613	23029	21621	23541	6798	7836	8872	9086	34348	8907	15920	11068
GCF_007990345.1	NC_053435	NC_053435.1	Gossypium hirsutum isolate 1008001.06 chromosome A12; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	35683004	35615925	18988548	19013837	173000	109474314	0.33	0.33	0.17	0.17	0.35	0.9308	0.0016	0.9984	1.9312	1909	1908	3817	3352969	3850889	1981840	2184849	3500	11374047	0.29	0.33	0.19	0.19	0.38	0.9047	0.1754	0.8459	1.9447	12946	1329	1347	2676	961143	915677	667053	795483	3339356	0.29	0.28	0.19	0.24	0.43	0.873	0.3074	0.753	1.9498	0	1315819	1682831	707115	758320	2000	4466085	0.27	0.41	0.15	0.17	0.32	0.8564	0.3495	0.7215	1.8603	0	513	509	1022	161768	174802	101098	104927	542595	0.3	0.31	0.2	0.19	0	0.39	0.8711	0.3177	0.7458	1.9293	0	184098	213180	86920	97256	0	581454	0.29	0.4	0.15	0.16	0	0.31	0.8556	0.3559	0.721	1.8422	28	14	42	614	773	757	973	3117	0.19	0.25	0.25	0.31	0.56	0.8709	0.2982	0.7541	1.9585	5	0	5	1788	1712	1691	2117	7308	0.25	0.24	0.24	0.28	0	0.52	0.9074	0.1253	0.8848	1.993	29243	33002	11568	17417	20807	27480	25881	25402	14834	18190	27083	35853	21847	6421	16665	19181	22551	18106	21457	26322	15988	19758	14458	33147	18173	12517	11309	28769	17447	21824	17185	24660	11358	15688	17279	14611	10226	8675	11912	12396	14192	4344	33544	11701	13052	26123	14209	21502	14583	18489	9002	5906	16448	18071	16546	17610	5183	6317	6954	7284	25542	6686	11409	8256
GCF_007990345.1	NC_053436	NC_053436.1	Gossypium hirsutum isolate 1008001.06 chromosome A13; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	36334401	36334774	19408582	19416867	152000	111646624	0.33	0.33	0.17	0.17	0.35	0.9302	0.0002	0.9998	1.9318	1753	1902	3655	2998579	3463281	1738579	1917348	2000	10119787	0.29	0.33	0.19	0.19	0.38	0.9014	0.1865	0.8374	1.9409	5755	1133	1262	2395	825545	792315	571880	677596	2867336	0.29	0.28	0.19	0.24	0.43	0.872	0.3096	0.7515	1.9486	0	1208012	1545714	630498	682604	1500	4068328	0.28	0.41	0.15	0.17	0.32	0.857	0.3471	0.7231	1.8585	0	569	581	1150	172459	184674	107835	109944	574912	0.3	0.31	0.2	0.19	0	0.39	0.8728	0.3051	0.7533	1.932	0	183556	212968	89655	99326	500	586005	0.29	0.4	0.15	0.16	0	0.31	0.8555	0.3416	0.7283	1.8466	29	41	70	991	1307	1223	1594	5115	0.19	0.26	0.24	0.31	0.55	0.8866	0.3134	0.7422	1.964	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24709	28125	9603	15146	17714	23365	21908	22375	12447	15997	23523	30958	18975	5503	13955	15954	19586	15121	18808	23188	12877	16819	12441	28937	14646	10609	9562	24603	15408	18894	14976	21025	9583	13388	14758	12091	8824	7343	10532	10498	11982	3471	28821	9960	11343	22855	11691	18135	12802	16093	7998	5014	14180	15714	14010	16104	4273	5186	6260	6110	22094	5817	10601	7299
GCF_007990345.1	NC_053437	NC_053437.1	Gossypium hirsutum isolate 1008001.06 chromosome D01; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	21606604	21655977	10927219	10958208	57000	65205008	0.33	0.33	0.17	0.17	0.34	0.9394	0.0026	0.9974	1.9205	1571	1489	3060	2944285	3403750	1692453	1877956	2500	9920944	0.29	0.33	0.18	0.19	0.37	0.9039	0.1835	0.8392	1.9381	13105	1212	1106	2318	862087	832674	588432	696250	2979443	0.29	0.28	0.19	0.24	0.43	0.873	0.3004	0.7574	1.9497	0	1155681	1481930	600046	653609	2000	3893266	0.28	0.41	0.15	0.16	0.32	0.8554	0.3498	0.7214	1.8567	0	316	338	654	143153	159304	89439	90981	482877	0.29	0.32	0.19	0.19	0	0.39	0.8693	0.3454	0.7246	1.9207	0	159416	190919	72234	84277	0	506846	0.29	0.41	0.14	0.16	0	0.3	0.8527	0.3793	0.704	1.8347	15	28	43	656	761	802	1000	3219	0.2	0.24	0.25	0.31	0.56	0.8896	0.2256	0.8033	1.9707	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25431	29264	10274	15805	17940	23374	22684	23857	13016	16605	24960	32111	20502	5337	14711	17587	20766	15545	19707	24358	13541	17107	12911	29673	14932	10821	10770	26673	16052	19696	15635	23250	9894	14394	15608	12700	8786	7279	10415	10658	12319	3483	30443	9743	11654	23739	12119	18719	13238	16345	8083	5076	15865	15399	14294	15728	4606	5345	5988	6196	23406	6041	10210	7370
GCF_007990345.1	NC_053438	NC_053438.1	Gossypium hirsutum isolate 1008001.06 chromosome D02; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	23942309	23935761	12107634	12126292	74500	72186496	0.33	0.33	0.17	0.17	0.34	0.938	0.0009	0.9991	1.9205	1610	1644	3254	3226550	3684581	1851411	2041669	3500	10807711	0.29	0.33	0.18	0.19	0.38	0.9046	0.1833	0.8399	1.9399	28458	1235	1217	2452	905098	872854	620482	738019	3136453	0.29	0.28	0.19	0.24	0.43	0.8736	0.3028	0.7561	1.9496	0	1296383	1622788	670026	720590	1500	4311287	0.28	0.41	0.15	0.16	0.32	0.8565	0.3463	0.7237	1.8593	0	337	381	718	148693	165941	91478	97070	503182	0.29	0.32	0.19	0.2	0	0.39	0.8706	0.3456	0.7253	1.9211	0	169129	202530	79423	88059	0	539141	0.29	0.41	0.14	0.16	0	0.3	0.8525	0.374	0.7064	1.8355	13	23	36	536	682	630	843	2691	0.2	0.25	0.23	0.32	0.55	0.8859	0.292	0.7555	1.9653	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26805	30972	10832	16542	18893	24709	23199	24966	13416	17396	26739	33611	20738	6022	15514	17888	20919	16588	20787	25847	14475	18928	13403	31652	15710	11523	10755	27692	17161	20445	16546	23950	10470	14804	16243	13487	9644	7992	11608	11201	13061	3810	32361	10856	12674	24553	13056	19675	14551	17724	8510	5663	15772	16400	14868	16566	4628	5657	6705	6571	24088	6044	10806	7752
GCF_007990345.1	NC_053439	NC_053439.1	Gossypium hirsutum isolate 1008001.06 chromosome D03; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	18252688	18207577	9232042	9214965	49000	54956272	0.33	0.33	0.17	0.17	0.34	0.9407	0.0022	0.9978	1.9205	1114	1268	2382	2156792	2495370	1261399	1396411	500	7310472	0.29	0.33	0.18	0.19	0.38	0.9038	0.185	0.8381	1.94	9186	847	941	1788	645255	611458	440948	525636	2223297	0.29	0.28	0.19	0.24	0.43	0.8729	0.3026	0.7561	1.9494	0	808354	1046672	426104	458745	500	2740375	0.27	0.41	0.15	0.16	0.32	0.855	0.3518	0.72	1.856	0	228	282	510	104852	119733	64213	67972	356770	0.29	0.32	0.19	0.2	0	0.39	0.8694	0.3473	0.7234	1.9204	49	115444	141635	55435	62392	0	374906	0.28	0.41	0.15	0.16	0	0.31	0.8542	0.3866	0.6979	1.839	27	18	45	663	812	826	1066	3367	0.2	0.24	0.25	0.32	0.56	0.8857	0.2508	0.7856	1.9685	1	1	2	993	821	761	935	3510	0.28	0.24	0.21	0.26	0	0.48	0.9057	0.1665	0.8482	1.9929	19635	22090	7548	11495	13317	17724	16179	17261	9559	12473	18565	24241	14589	4350	10695	13044	14385	11915	14648	17633	10239	13215	9628	22173	11126	8587	7632	19405	11771	14650	11776	16280	7502	10340	11638	9635	6750	5598	7948	8128	9460	2730	23060	7674	8559	17704	9262	14126	9708	12397	6323	3925	11626	11593	10791	11884	3372	4158	5018	4645	17614	4471	7769	5496
GCF_007990345.1	NC_053440	NC_053440.1	Gossypium hirsutum isolate 1008001.06 chromosome D04; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	19283324	19323585	9766877	9796402	59000	58229188	0.33	0.33	0.17	0.17	0.34	0.9408	0.0026	0.9975	1.9208	1300	1345	2645	2500219	2881309	1449805	1599506	1500	8432339	0.29	0.33	0.18	0.2	0.38	0.9045	0.1857	0.8375	1.94	7680	993	985	1978	704649	676194	487571	578283	2446697	0.29	0.28	0.19	0.24	0.43	0.8728	0.3051	0.7546	1.9494	2	1022956	1293654	531384	569544	1500	3419038	0.28	0.41	0.15	0.16	0.32	0.856	0.3496	0.7214	1.8574	0	262	296	558	119970	134403	74321	78225	406919	0.29	0.32	0.19	0.19	0	0.39	0.8695	0.355	0.7183	1.9193	12	144331	174416	71038	79143	0	468928	0.29	0.41	0.15	0.16	0	0.31	0.8551	0.3695	0.7085	1.8437	28	27	55	811	1001	1004	1277	4093	0.2	0.24	0.24	0.31	0.56	0.8877	0.2393	0.797	1.9716	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21140	24253	8196	12929	15450	19508	18571	19444	10884	13845	19992	26205	16170	4667	11946	14066	16707	13441	16061	19547	11153	14153	10545	23883	12734	9052	8538	21302	13251	16221	12802	18034	8346	11756	12760	10576	7514	6441	8911	9016	10239	3044	24704	8433	9535	19658	10305	15490	10592	13350	6666	4222	12216	13443	11997	12911	3665	4368	5104	4959	18684	4841	8589	5952
GCF_007990345.1	NC_053441	NC_053441.1	Gossypium hirsutum isolate 1008001.06 chromosome D05; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	22110837	22093303	11098333	11095746	86500	66484719	0.33	0.33	0.17	0.17	0.33	0.9428	0.0005	0.9995	1.9186	2223	2334	4557	4630325	5344236	2744349	3009702	3000	15731612	0.29	0.33	0.18	0.2	0.38	0.908	0.1647	0.8537	1.9439	22864	1873	1974	3847	1464956	1408904	1016403	1191797	5082060	0.29	0.28	0.2	0.24	0.43	0.8731	0.2988	0.7591	1.9514	1	1735308	2269176	928924	991311	2500	5927219	0.27	0.41	0.16	0.16	0.32	0.8565	0.3451	0.7241	1.8606	0	270	277	547	156490	171916	95332	101131	524869	0.29	0.32	0.19	0.2	0	0.39	0.8669	0.3545	0.7199	1.916	0	172894	205442	83878	92292	500	555006	0.29	0.41	0.15	0.16	0	0.31	0.8524	0.3843	0.7007	1.839	47	33	80	1145	1422	1500	1919	5986	0.19	0.24	0.25	0.32	0.57	0.8825	0.277	0.7665	1.9612	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	43623	49763	16723	26420	31107	40227	37424	40486	23039	28729	43041	54322	34663	9375	24679	30011	35592	27005	33483	40332	24423	28645	22661	49486	26719	18687	17910	45903	26699	34430	26957	39369	17048	23776	26704	21572	15274	13294	18023	18271	21949	6022	50917	17659	20527	39471	21342	31954	22154	27822	13301	8459	25815	27334	24524	27846	7474	8685	10050	10215	40016	9923	17507	12002
GCF_007990345.1	NC_053442	NC_053442.1	Gossypium hirsutum isolate 1008001.06 chromosome D06; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	22167899	22119509	11183917	11156381	56500	66684206	0.33	0.33	0.17	0.17	0.34	0.9403	0.0023	0.9977	1.9198	1472	1508	2980	2773623	3200308	1610441	1764052	1000	9349424	0.29	0.33	0.18	0.19	0.38	0.9047	0.1821	0.8402	1.9396	7112	1101	1127	2228	798151	764443	552359	647751	2762704	0.29	0.28	0.19	0.24	0.43	0.8726	0.3016	0.7565	1.9506	0	1105431	1407033	574362	614584	1000	3702410	0.28	0.41	0.15	0.16	0.32	0.855	0.3481	0.7229	1.8561	0	330	320	650	143070	161150	88913	94946	488079	0.29	0.32	0.19	0.2	0	0.39	0.8684	0.3471	0.7229	1.9228	0	156747	190466	74097	82070	0	503380	0.29	0.41	0.15	0.16	0	0.3	0.8536	0.3692	0.7091	1.839	17	32	49	683	862	915	1158	3618	0.19	0.24	0.25	0.32	0.57	0.8938	0.263	0.775	1.9639	5	8	13	4063	3642	3953	4812	16470	0.25	0.23	0.24	0.27	0	0.52	0.8975	0.1131	0.8957	1.9923	24025	26624	9463	14192	16766	21427	20439	21648	12268	15569	22725	29604	18366	5357	13503	16088	18838	14785	18073	21911	12261	15957	12016	27248	13921	10722	9828	23984	14707	18039	14609	20526	9408	13151	14485	11733	8404	6926	10113	10177	11455	3364	28207	9318	10964	21853	11185	17717	12564	15406	7847	4810	14453	14858	12935	14817	4221	5091	6331	5984	22177	5563	9772	7196
GCF_007990345.1	NC_053443	NC_053443.1	Gossypium hirsutum isolate 1008001.06 chromosome D07; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	19761282	19773892	9922147	9920606	63000	59440927	0.33	0.33	0.17	0.17	0.33	0.9407	0.0004	0.9996	1.9186	1487	1556	3043	2869238	3321683	1660130	1842174	3000	9696225	0.29	0.33	0.18	0.2	0.37	0.9054	0.1754	0.8453	1.9396	10759	1168	1222	2390	847596	803471	582591	690859	2924517	0.29	0.28	0.19	0.24	0.43	0.8716	0.3056	0.7544	1.9494	0	1112200	1445844	577390	626127	2000	3763561	0.27	0.41	0.15	0.16	0.32	0.8555	0.3539	0.7188	1.8575	0	262	294	556	141052	154962	86532	91202	473748	0.3	0.31	0.19	0.2	0	0.39	0.8708	0.3456	0.7242	1.9242	3	166629	195359	77093	89858	0	528939	0.29	0.41	0.14	0.16	0	0.3	0.8534	0.3756	0.7048	1.8373	25	17	42	608	761	786	974	3129	0.19	0.24	0.25	0.31	0.56	0.8816	0.2715	0.7706	1.964	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25200	29357	9847	15399	18335	23649	22388	22502	12956	16195	24408	31890	19573	5253	14366	17034	19986	15435	19305	22895	12853	17140	12567	29644	15009	11104	9856	24846	15513	19511	15256	21722	9995	13552	15129	12893	8933	7708	10621	10581	12166	3583	30146	10027	11314	23730	12112	18570	12537	16123	7946	4933	14386	15707	14633	15993	4391	5179	6028	6163	22570	5715	10182	7135
GCF_007990345.1	NC_053444	NC_053444.1	Gossypium hirsutum isolate 1008001.06 chromosome D08; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	23027300	23030093	11627521	11670733	71500	69427147	0.33	0.33	0.17	0.17	0.34	0.9389	0.0019	0.9981	1.9204	1664	1705	3369	3130396	3657340	1854199	2040659	2000	10684594	0.29	0.33	0.18	0.19	0.38	0.9051	0.1788	0.8428	1.9409	7230	1269	1321	2590	917289	881440	647639	759187	3205555	0.29	0.28	0.2	0.24	0.43	0.8727	0.305	0.7549	1.9505	822	1211194	1598258	641899	696206	1500	4149057	0.27	0.41	0.15	0.17	0.32	0.8564	0.3535	0.7186	1.8591	0	338	332	670	133133	148816	84748	86434	453131	0.29	0.32	0.2	0.19	0	0.39	0.8703	0.3419	0.7266	1.9225	0	136815	169886	66732	74460	500	448393	0.28	0.41	0.15	0.16	0	0.31	0.8562	0.3718	0.7074	1.8423	19	22	41	650	728	755	940	3073	0.21	0.24	0.25	0.31	0.55	0.8914	0.2207	0.8105	1.972	2	7	9	3071	2732	3102	3814	12719	0.24	0.22	0.25	0.28	0	0.53	0.8965	0.1213	0.8876	1.9911	27552	31482	11119	16644	19903	24911	24520	24723	14489	17949	25907	33119	20993	6348	15229	18729	21445	17556	21121	25192	14958	18498	14382	31314	16824	12375	10990	27197	16348	20840	17006	23890	11114	14938	16422	14198	10153	8524	11777	12057	13548	4162	31755	11177	13203	25216	13361	20321	14332	17826	9099	5919	15821	17222	15908	17128	5035	6091	7255	6830	24450	6559	11840	8147
GCF_007990345.1	NC_053445	NC_053445.1	Gossypium hirsutum isolate 1008001.06 chromosome D09; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	18152193	18119169	9079180	9047254	48000	54445796	0.33	0.33	0.17	0.17	0.33	0.9383	0.0027	0.9973	1.9178	1608	1688	3296	3080781	3554980	1784193	1975162	2500	10397616	0.29	0.32	0.19	0.2	0.39	0.9057	0.1682	0.8514	1.9438	20217	1219	1233	2452	903098	862202	620888	737616	3123804	0.29	0.28	0.19	0.24	0.43	0.8724	0.3016	0.7572	1.9503	0	1233369	1588871	637686	691304	1500	4152730	0.27	0.41	0.15	0.16	0.32	0.8559	0.3464	0.7237	1.8583	0	229	232	461	126377	138558	76667	79407	421009	0.3	0.31	0.19	0.2	0	0.39	0.8672	0.3593	0.7163	1.9165	54	122582	149684	58555	67491	0	398312	0.29	0.41	0.14	0.16	0	0.3	0.852	0.3871	0.6967	1.8345	30	29	59	873	1050	1087	1432	4442	0.2	0.24	0.24	0.32	0.57	0.8853	0.2775	0.765	1.9646	101	166	267	7219	7162	8451	8910	31742	0.23	0.23	0.27	0.28	0	0.55	0.9063	0.0759	0.9286	1.9908	27026	30761	10430	16383	19376	24691	23619	25048	13822	17277	26308	33456	21387	5969	15257	17992	20965	16561	20158	24873	13901	18299	13527	30829	15910	11646	10633	27076	16449	20499	16465	23271	10386	14505	16421	13419	9338	7936	11060	11306	13611	3930	31696	10909	12475	24967	12936	20102	14043	17208	8662	5588	15727	16248	15194	16634	4980	5849	6811	6358	24225	6311	11234	7895
GCF_007990345.1	NC_053446	NC_053446.1	Gossypium hirsutum isolate 1008001.06 chromosome D10; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	22666151	22630957	11387222	11351364	53500	68089194	0.33	0.33	0.17	0.17	0.33	0.9389	0.0024	0.9976	1.9188	1781	1711	3492	3411852	3935946	1969434	2171970	4000	11493202	0.29	0.33	0.18	0.2	0.38	0.9043	0.1764	0.8449	1.9405	8346	1363	1285	2648	988642	950332	672052	797808	3408834	0.29	0.28	0.19	0.24	0.43	0.8732	0.2984	0.7591	1.9504	2	1320056	1690940	687360	740615	1500	4440471	0.27	0.41	0.15	0.16	0.32	0.8555	0.3477	0.7226	1.8562	0	356	369	725	154414	174276	95093	100224	524007	0.29	0.32	0.19	0.2	0	0.39	0.8691	0.346	0.7248	1.9224	194	147023	186763	70372	79773	0	483931	0.28	0.42	0.15	0.16	0	0.3	0.8518	0.3835	0.701	1.8341	42	30	72	1053	1324	1301	1655	5333	0.2	0.25	0.24	0.31	0.55	0.8929	0.2471	0.786	1.9734	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	29472	33313	11523	17713	20959	26781	25007	27514	14994	18735	29197	36462	22338	6469	16313	20469	22673	17889	22752	27636	15433	19858	14937	33042	17018	12395	12277	30975	17915	22752	18234	26497	11370	16825	17880	14524	9971	8352	12301	12086	14383	3901	34914	11350	13546	27051	14170	21766	15413	18808	9206	5805	18550	17496	16200	17937	5403	6092	7033	6843	26669	7083	11889	8452
GCF_007990345.1	NC_053447	NC_053447.1	Gossypium hirsutum isolate 1008001.06 chromosome D11; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	24241449	24199685	12152247	12166897	63500	72823778	0.33	0.33	0.17	0.17	0.33	0.9401	0.0015	0.9985	1.9188	2131	2199	4330	4378248	5026998	2567241	2815010	2500	14789997	0.29	0.33	0.18	0.2	0.38	0.9066	0.1709	0.8488	1.9426	6541	1703	1818	3521	1375445	1313418	931214	1106617	4726694	0.29	0.28	0.19	0.24	0.43	0.8732	0.3028	0.7565	1.9494	19	1596767	2080333	851023	902379	2000	5432502	0.27	0.41	0.15	0.16	0.32	0.856	0.3488	0.7217	1.8576	0	356	313	669	178698	197295	110422	115141	601556	0.29	0.32	0.19	0.19	0	0.39	0.871	0.3334	0.7343	1.9221	198	180727	213439	90610	98269	0	583045	0.28	0.41	0.15	0.16	0	0.31	0.8541	0.3779	0.7039	1.8444	38	24	62	922	1089	1156	1430	4597	0.2	0.24	0.25	0.31	0.56	0.885	0.2578	0.7823	1.9651	0	1	1	945	787	700	854	3286	0.29	0.24	0.21	0.26	0	0.47	0.9262	0.1903	0.8262	1.9914	40013	46874	15789	24566	28585	38073	34449	37743	20947	26721	40003	51827	31723	8697	23507	27301	32060	23946	30607	38644	21541	26243	20840	47539	23830	17136	16526	42937	24336	30904	24818	37699	15539	22432	24575	20252	13872	11484	16350	16981	20061	5770	50017	15708	19230	36446	19188	30701	21695	26371	12747	8073	24650	24110	22710	24898	7388	8394	9511	9464	37177	9800	17192	11743
GCF_007990345.1	NC_053448	NC_053448.1	Gossypium hirsutum isolate 1008001.06 chromosome D12; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	21021717	20979316	10585221	10606892	62000	63255146	0.33	0.33	0.17	0.17	0.34	0.9409	0.002	0.998	1.9198	1657	1755	3412	3134979	3639778	1877118	2069115	2000	10722990	0.29	0.33	0.18	0.2	0.38	0.9069	0.1748	0.8459	1.9442	7517	1339	1400	2739	989329	947753	695386	822941	3455409	0.29	0.28	0.19	0.24	0.43	0.8732	0.3065	0.7534	1.9506	44	1188767	1556261	633395	684380	500	4063303	0.27	0.41	0.16	0.17	0.32	0.8564	0.3502	0.721	1.861	822	266	303	569	132324	149589	84202	85741	451856	0.29	0.32	0.19	0.2	0	0.39	0.8691	0.3477	0.7232	1.9221	74	140382	171189	70121	77319	500	459511	0.28	0.41	0.15	0.16	0	0.31	0.8528	0.3732	0.7069	1.8441	30	19	49	698	887	886	1139	3610	0.19	0.25	0.25	0.32	0.56	0.8792	0.2804	0.7638	1.963	0	4	4	966	839	887	1093	3785	0.26	0.23	0.24	0.27	0	0.51	0.8875	0.1106	0.8969	1.9964	30119	33672	11884	17916	21598	28370	26663	26092	15484	19062	27580	36684	22782	6682	16996	19952	23423	18832	22258	27329	16707	20238	15285	33940	18746	13056	11689	30030	17949	22750	17925	25584	11697	16021	17907	15278	10933	9030	12471	12923	14777	4576	33982	12123	13630	27069	14678	21981	15129	19248	9487	6186	16834	18776	17040	18614	5307	6597	7429	7395	26509	6855	11996	8456
GCF_007990345.1	NC_053449	NC_053449.1	Gossypium hirsutum isolate 1008001.06 chromosome D13; Gossypium_hirsutum_v2.1; whole genome shotgun sequence.	21610781	21587581	10919288	10905648	76500	65099798	0.33	0.33	0.17	0.17	0.34	0.9406	0.0012	0.9988	1.92	1530	1647	3177	2928857	3398980	1702266	1878303	1000	9909406	0.29	0.33	0.18	0.19	0.38	0.9038	0.1835	0.8394	1.9394	8469	1170	1272	2442	843787	810475	586867	695087	2936216	0.29	0.28	0.19	0.24	0.43	0.8717	0.3105	0.751	1.9486	0	1159278	1496423	603191	652605	500	3911997	0.27	0.41	0.15	0.17	0.32	0.8562	0.3491	0.7219	1.8573	0	309	318	627	143461	158373	86494	90738	479066	0.3	0.32	0.19	0.19	0	0.39	0.8708	0.3409	0.7272	1.922	0	149762	181067	73091	81387	0	485307	0.29	0.4	0.15	0.16	0	0.31	0.855	0.3707	0.7078	1.8476	28	35	63	902	1142	1123	1435	4602	0.2	0.25	0.24	0.31	0.56	0.8878	0.2769	0.7688	1.9671	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25626	28659	9957	15343	18287	23699	22489	22987	12997	16413	23922	31615	19416	5602	14190	16552	19930	15590	19284	23480	13239	17397	12730	29506	14960	11099	9737	25395	15608	19416	15521	21679	9964	13502	15181	12555	8745	7504	10715	10889	12261	3620	29577	10192	11576	23677	12051	18608	12814	16286	8267	5107	14430	16111	14315	16363	4183	5510	6482	6208	22585	5893	10606	7434
NA	NC_027406	NC_027406.1	Gossypium hirsutum mitochondrion; complete genome.	184049	183822	149923	150790	0	668584	0.28	0.27	0.22	0.23	0.45	0.9518	0.0035	0.9965	1.9927	39	28	67	15233	15364	13096	14515	0	58208	0.25	0.28	0.22	0.25	0.47	0.9027	0.1988	0.8262	1.9762	116	20	11	31	7366	8190	5783	5997	27336	0.27	0.3	0.2	0.22	0.42	0.9035	0.1916	0.8334	1.9656	102	4448	3936	4312	4842	0	17538	0.25	0.22	0.25	0.28	0.53	0.9208	0.1268	0.8826	1.9921	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12	17	29	515	597	499	613	2224	0.23	0.27	0.23	0.28	0.5	0.8906	0.2036	0.8221	1.9829	4	0	4	2299	1987	2011	2527	8824	0.27	0.22	0.23	0.28	0	0.51	0.9203	0.1981	0.8226	1.9904	201	172	161	139	126	114	209	283	129	145	193	269	137	74	130	119	169	110	270	339	85	182	97	192	65	116	132	191	211	200	184	197	108	201	117	105	71	106	83	109	99	71	264	90	71	176	130	179	92	176	127	80	211	172	100	147	21	80	76	122	181	30	30	140
NA	NC_007944	NC_007944.1	Gossypium hirsutum chloroplast; complete genome.	49673	50924	30174	29530	0	160301	0.31	0.32	0.19	0.18	0.37	0.9357	0.0232	0.977	1.9524	57	71	128	33006	32554	19932	23470	0	108962	0.28	0.29	0.19	0.23	0.43	0.8967	0.2129	0.8151	1.9518	57	36	45	81	23365	23860	13644	15667	76536	0.3	0.31	0.17	0.21	0.39	0.8889	0.263	0.7832	1.9304	57	2730	2496	1231	1506	0	7963	0.34	0.31	0.16	0.19	0.35	0.8976	0.142	0.7812	1.922	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16	21	37	621	690	667	823	2801	0.22	0.25	0.24	0.3	0.53	0.8808	0.2257	0.8113	1.9675	4	4	8	2338	1690	2146	2876	9050	0.26	0.2	0.23	0.31	0	0.53	0.9099	0.2805	0.7571	1.9788	583	355	491	493	350	353	609	1076	314	451	954	994	413	146	394	298	569	201	517	932	182	553	181	843	220	262	380	557	743	683	435	548	171	658	378	214	157	193	192	239	125	127	998	186	77	479	326	447	222	458	187	168	800	398	180	291	19	125	151	323	702	54	25	358