GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_019359855.1	NC_067244	NC_067244.1	Lolium perenne isolate Kyuss_39 chromosome 1; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	73262524	73281915	58425286	58462170	2500	263434395	0.28	0.28	0.22	0.22	0.44	0.9341	0.0004	0.9996	1.9908	3006	3054	6060	7269859	7961140	6393363	6402328	100	28026790	0.24	0.27	0.25	0.24	0.49	0.9135	0.1405	0.8741	1.9728	94305	2332	2393	4725	1380248	1267762	1590045	1642618	5880673	0.25	0.23	0.25	0.27	0.52	0.8694	0.2868	0.7669	1.9387	0	3067537	3500390	2392431	2386572	0	11346930	0.25	0.36	0.2	0.19	0.38	0.8725	0.3072	0.7517	1.9152	256124	600	593	1193	459061	540595	416280	422927	1838863	0.25	0.28	0.23	0.24	0.47	0.8807	0.2685	0.778	1.9505	72	683836	815749	527531	522260	2549376	0.25	0.37	0.19	0.18	0.38	0.8743	0.322	0.742	1.9089	53	48	101	1415	1752	1939	2411	7517	0.19	0.23	0.26	0.32	0.58	0.8744	0.2774	0.7673	1.9543	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	47009	57244	13548	20748	34837	63566	36230	24399	36526	31896	25952	38517	26836	22822	18293	33237	25662	42740	42805	23577	44471	25931	51332	40705	42029	31463	16589	29257	18003	30869	36433	28870	36406	17218	25666	50017	29437	26853	27569	57790	34184	33708	30096	51022	30618	26944	29537	26502	17062	24602	24938	43820	11946	26417	32540	29768	5697	25766	35257	14819	29703	6139	15998	14556
GCF_019359855.1	NC_067245	NC_067245.1	Lolium perenne isolate Kyuss_39 chromosome 2; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	96885694	96761196	76837410	76817823	4000	347306123	0.28	0.28	0.22	0.22	0.44	0.9294	0.0008	0.9992	1.9904	4206	4199	8405	9584088	10506183	8422038	8425328	200	36937837	0.24	0.27	0.25	0.25	0.49	0.9134	0.1377	0.8767	1.9732	205077	3241	3123	6364	1840051	1692476	2141422	2202977	7876926	0.25	0.23	0.25	0.27	0.52	0.87	0.2866	0.7675	1.9381	0	3980321	4568251	3104482	3081101	100	14734255	0.26	0.36	0.2	0.19	0.38	0.8734	0.3	0.7566	1.9169	0	740	796	1536	577686	678907	518589	526453	2301635	0.26	0.28	0.23	0.24	0.47	0.8799	0.2744	0.7738	1.9496	388	907818	1082669	677888	679096	3347471	0.25	0.38	0.19	0.18	0.37	0.8743	0.3293	0.7373	1.9065	50	61	111	1627	1917	2085	2640	8269	0.19	0.23	0.25	0.32	0.57	0.8784	0.2585	0.781	1.9622	154	201	355	16460	14541	17593	20160	68754	0.24	0.21	0.26	0.29	0	0.55	0.8959	0.1159	0.8913	1.9901	62430	76226	17984	28342	47187	84327	48630	31981	49876	44045	33208	51024	36201	31559	24646	44527	35249	56581	56982	30908	59772	33294	68980	53079	55617	42963	21592	38725	23780	41871	47840	37861	49047	22722	34122	65634	39620	36726	36922	77698	46490	45441	39694	67694	41918	36036	39752	36084	22999	32796	34377	58968	15647	35612	43482	40038	8165	35286	47742	20312	39223	8504	22374	20038
GCF_019359855.1	NC_067246	NC_067246.1	Lolium perenne isolate Kyuss_39 chromosome 3; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	86219533	86127564	68393507	68392721	3800	309137125	0.28	0.28	0.22	0.22	0.44	0.9308	0.0005	0.9995	1.9904	3757	3651	7408	8890847	9762278	7809069	7784386	100	34246680	0.24	0.27	0.25	0.24	0.49	0.9138	0.1383	0.8761	1.9729	17959	2928	2787	5715	1633258	1512983	1910418	1955478	7012137	0.25	0.23	0.25	0.27	0.52	0.8696	0.2846	0.7686	1.9392	1334	3770311	4293684	2935750	2909810	0	13909555	0.26	0.36	0.2	0.19	0.38	0.8732	0.3015	0.7557	1.9165	0	746	750	1496	577204	682775	520381	526675	2307035	0.26	0.28	0.23	0.24	0.47	0.8803	0.2709	0.7763	1.9498	187	877083	1060047	673481	666501	3277112	0.25	0.37	0.19	0.18	0.38	0.8746	0.3217	0.742	1.9096	60	43	103	1493	1824	1906	2420	7643	0.19	0.24	0.25	0.32	0.57	0.8875	0.2496	0.7867	1.9664	0	51	51	20686	18343	22071	26721	87821	0.23	0.21	0.26	0.3	0	0.56	0.9098	0.1236	0.8859	1.9837	56793	67890	16095	24694	41080	75514	42445	28282	44766	39376	29633	44104	31718	27970	21604	39380	30707	51744	51558	27997	53749	29751	62994	46887	50194	38254	19567	35106	21188	36471	44152	34062	44152	20660	30380	59419	35304	32830	33558	69285	41046	40737	35268	60945	37565	31679	34423	30943	20341	28962	29894	51306	13921	31170	38294	35225	7142	31037	42336	18173	35318	7344	18961	17785
GCF_019359855.1	NC_067247	NC_067247.1	Lolium perenne isolate Kyuss_39 chromosome 4; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	94740697	94730776	75335909	75441396	3400	340252178	0.28	0.28	0.22	0.22	0.44	0.9312	0.0008	0.9992	1.9906	3938	4013	7951	9151502	10087946	8048348	8065043	100	35352939	0.24	0.27	0.25	0.24	0.49	0.9137	0.14	0.8747	1.9722	72781	3037	3173	6210	1785137	1635216	2073931	2132671	7626955	0.25	0.23	0.25	0.27	0.52	0.8697	0.2882	0.7662	1.9381	0	4239231	4867349	3321898	3325227	100	15753805	0.26	0.36	0.2	0.19	0.38	0.8733	0.3031	0.7547	1.9162	38027	821	745	1566	576099	681160	510770	515158	2283187	0.26	0.28	0.23	0.24	0.46	0.8807	0.2692	0.7773	1.9499	258	817349	975097	613697	604274	3010417	0.25	0.38	0.19	0.18	0.37	0.873	0.3297	0.7368	1.9052	60	70	130	1932	2307	2416	3010	9665	0.2	0.24	0.25	0.31	0.56	0.889	0.2334	0.7993	1.9698	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	60801	75162	17310	26969	45015	82563	46480	31134	48536	42296	32450	48852	34336	29862	23718	42933	33570	54624	55501	29902	56807	32673	67590	51461	54370	41769	20858	37259	23191	40864	47813	36637	47546	21660	33035	65367	38053	36000	35574	76051	44849	44816	38600	66063	40682	34023	37806	34688	22438	31658	32765	57227	14839	33617	41997	38276	7904	33151	45827	19430	37777	8454	22399	19445
GCF_019359855.1	NC_067248	NC_067248.1	Lolium perenne isolate Kyuss_39 chromosome 5; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	76759122	76875884	60750945	60848322	3100	275237373	0.28	0.28	0.22	0.22	0.44	0.9301	0.0016	0.9984	1.9902	3112	3077	6189	7534165	8225121	6579410	6583499	200	28922395	0.24	0.27	0.24	0.24	0.49	0.9134	0.1415	0.8735	1.9717	20013	2444	2400	4844	1413404	1296790	1608013	1664649	5982856	0.25	0.23	0.24	0.27	0.52	0.8701	0.2844	0.7691	1.9393	0	3044837	3472980	2352447	2337946	100	11208310	0.26	0.36	0.2	0.19	0.38	0.8725	0.3018	0.7556	1.9141	68739	601	616	1217	461655	544580	408748	414184	1829167	0.26	0.28	0.23	0.24	0.47	0.879	0.2723	0.7758	1.949	5	776105	923036	601548	595356	2896045	0.25	0.37	0.19	0.18	0.38	0.8747	0.3244	0.7399	1.9094	40	50	90	1272	1563	1693	2108	6636	0.19	0.24	0.26	0.32	0.57	0.8891	0.2537	0.784	1.9628	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	48712	58755	14190	21314	35346	64496	37094	24918	37148	33133	26140	39506	26980	22888	18788	33928	26883	42757	42182	24244	45600	26069	52352	41665	42548	31561	16977	30594	18443	32235	36386	29735	35687	17842	26287	50002	29897	27033	28157	57595	35185	33759	31131	49964	32042	27551	29399	27216	17944	26021	24457	43094	12327	26925	32985	30440	6423	26246	34679	15720	30940	6131	16754	15675
GCF_019359855.1	NC_067249	NC_067249.1	Lolium perenne isolate Kyuss_39 chromosome 6; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	59648714	59704770	47491246	47461719	2800	214309249	0.28	0.28	0.22	0.22	0.44	0.9355	0.0008	0.9992	1.9906	2688	2590	5278	6186000	6807327	5459072	5457424	100	23909923	0.24	0.27	0.24	0.24	0.49	0.9135	0.1426	0.8724	1.9723	94285	2019	2011	4030	1180198	1073676	1347052	1392192	4993118	0.25	0.23	0.24	0.27	0.52	0.8697	0.2933	0.7627	1.9374	4	2599607	2982465	2051626	2035527	0	9669225	0.26	0.36	0.2	0.19	0.38	0.8727	0.3056	0.7526	1.9147	47711	583	527	1110	399072	470174	363194	366563	1599003	0.26	0.28	0.23	0.24	0.47	0.8799	0.2715	0.7758	1.9499	3	710334	847825	544261	538627	2641047	0.25	0.37	0.19	0.18	0.37	0.8742	0.3252	0.7396	1.908	46	26	72	1060	1274	1334	1683	5351	0.2	0.24	0.25	0.32	0.57	0.8775	0.274	0.7699	1.9612	22	20	42	17402	15072	18802	22175	73451	0.23	0.21	0.27	0.3	0	0.56	0.9085	0.1276	0.8825	1.9816	39940	49305	11531	17640	29798	54606	31277	20657	30697	27117	21908	33497	22926	18993	15838	28209	22123	35451	35672	20045	36336	21774	43244	35444	35957	26836	13891	24575	15519	27259	30559	24266	30317	14423	21709	41964	24717	23440	23699	48787	28971	29481	26081	42154	26031	22984	24379	23009	14575	21070	21017	36196	9958	22523	27490	25114	5093	22030	29609	12904	25306	5256	13808	12968
GCF_019359855.1	NC_067250	NC_067250.1	Lolium perenne isolate Kyuss_39 chromosome 7; MPB_Lper_Kyuss_1697; whole genome shotgun sequence.	71121032	71152405	56633747	56646646	3800	255557630	0.28	0.28	0.22	0.22	0.44	0.9349	0.0003	0.9997	1.9907	3021	3062	6083	7065296	7739084	6242127	6256922	0	27303429	0.24	0.27	0.25	0.24	0.49	0.9138	0.1372	0.877	1.9721	18751	2335	2444	4779	1369776	1267780	1607481	1655220	5900257	0.25	0.23	0.25	0.27	0.52	0.8697	0.2837	0.7694	1.9393	0	3081309	3503178	2412752	2398163	0	11395402	0.26	0.36	0.2	0.19	0.38	0.8728	0.3052	0.753	1.9157	0	624	563	1187	450508	530386	402093	404552	1787539	0.26	0.28	0.23	0.24	0.47	0.8797	0.2751	0.773	1.949	8	666571	793950	508939	507238	2476698	0.25	0.37	0.19	0.18	0.38	0.874	0.3239	0.7407	1.9085	27	37	64	919	1117	1184	1502	4722	0.19	0.24	0.25	0.32	0.57	0.8906	0.2473	0.7869	1.9679	19	0	19	7329	6560	7650	9174	30713	0.23	0.21	0.26	0.29	0	0.55	0.9095	0.1119	0.8964	1.9849	47294	56818	13449	20881	34866	63977	36139	23762	36720	32891	24962	36793	26609	24099	17972	33867	26416	43386	42662	23498	45134	25563	52554	39780	42424	32155	16467	28582	17814	30970	37075	28161	36662	16800	25410	50010	29143	27108	28121	58440	34678	34207	28687	50909	30800	26633	30165	25969	17110	24618	25809	44987	11653	26648	32263	29789	5930	26742	36350	15552	28899	6077	16329	15255