GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_022539505.1	NC_061508	NC_061508.1	Lolium rigidum isolate FL_2022 chromosome 1; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	100683040	100605650	81464957	81472468	492800	364718915	0.28	0.28	0.22	0.22	0.45	0.9387	0.0004	0.9996	1.9912	4195	4171	8366	7791932	8725617	6896503	7002941	8100	30425093	0.24	0.27	0.25	0.25	0.49	0.9129	0.1327	0.8802	1.9682	11781	3409	3424	6833	2022910	1886551	2399528	2477987	5	8786981	0.25	0.23	0.25	0.27	0.52	0.8692	0.2797	0.772	1.9405	2	3938639	4647800	3004245	2999759	6895	14597338	0.26	0.36	0.2	0.19	0.38	0.8735	0.2995	0.7567	1.9172	646	605	1251	334300	395289	274205	294621	1298415	0.26	0.28	0.22	0.24	0.47	0.8741	0.2911	0.7631	1.9458	15	497391	628463	364368	368596	300	1859118	0.25	0.37	0.19	0.18	0.37	0.8763	0.3177	0.7439	1.9116	74	87	161	2295	2799	3007	3840	11941	0.19	0.23	0.25	0.32	0.57	0.8877	0.2544	0.782	1.9652	13	3	16	5928	5150	6446	7731	25255	0.23	0.21	0.27	0.3	0.56	0.9057	0.1199	0.8892	1.9822	70167	84522	20119	30250	51320	95260	52654	34716	55959	49346	35669	52935	40457	35784	26248	50510	38442	66831	66054	33753	70337	37007	81070	56386	63426	47972	23459	41976	25715	46020	56494	41960	56824	25103	37275	76231	43725	39412	43044	88692	52454	49789	41331	79135	46743	39294	45559	37677	25216	35907	38001	68356	17299	37102	47686	42374	9050	40042	52412	21796	42218	9397	25963	22421
GCF_022539505.1	NC_061509	NC_061509.1	Lolium rigidum isolate FL_2022 chromosome 2; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	80960821	80922900	65590131	65580340	397700	293451892	0.28	0.28	0.22	0.22	0.45	0.9395	0.0003	0.9997	1.9913	3592	3493	7085	6482596	7284216	5703740	5794653	6800	25272005	0.24	0.27	0.24	0.24	0.49	0.9127	0.1372	0.8764	1.969	9014	2786	2772	5558	1672468	1543817	1922518	1995449	0	7134252	0.25	0.23	0.24	0.27	0.51	0.8691	0.2893	0.7651	1.9391	0	3170321	3781994	2441950	2422406	5200	11821871	0.26	0.36	0.2	0.19	0.38	0.8737	0.2984	0.7573	1.9167	658	603	1261	307300	361209	248891	267440	1184840	0.26	0.28	0.22	0.24	0.46	0.8755	0.2774	0.7725	1.9486	60	416460	527706	301931	309688	300	1556085	0.25	0.37	0.19	0.18	0.37	0.876	0.3134	0.7472	1.9109	89	58	147	2105	2579	2733	3486	10903	0.19	0.24	0.25	0.32	0.57	0.8678	0.2997	0.7517	1.9543	13	12	25	9622	8216	10708	12604	41150	0.23	0.2	0.27	0.3	0.57	0.902	0.1197	0.8893	1.9805	56639	70021	16724	25173	42222	77524	43737	29490	45102	38812	30506	46299	33594	27769	22913	40052	32265	52243	51805	28027	54617	30755	64145	48349	51636	38418	19301	35223	21756	38843	44134	35120	44884	20696	30824	60069	34874	31949	33601	70389	42411	40454	35589	62149	37795	32891	35658	32686	21327	29682	29977	52485	14549	30950	38317	34799	7523	30826	40297	17423	35364	8073	21511	17750
GCF_022539505.1	NC_061510	NC_061510.1	Lolium rigidum isolate FL_2022 chromosome 3; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	114102612	114226777	92217888	92227089	572900	413347266	0.28	0.28	0.22	0.22	0.45	0.9391	0.0006	0.9994	1.9911	4814	4561	9375	8593676	9662859	7567516	7673350	8600	33506001	0.24	0.27	0.24	0.25	0.49	0.912	0.1363	0.8775	1.9677	14975	3851	3679	7530	2229149	2056270	2594596	2690857	0	9570872	0.25	0.23	0.24	0.27	0.52	0.8694	0.285	0.7683	1.9394	0	4301705	5150818	3257686	3236976	6600	15953785	0.26	0.36	0.2	0.19	0.38	0.8738	0.2977	0.7582	1.9171	804	719	1523	368078	434634	302681	320330	1425723	0.26	0.28	0.22	0.24	0.46	0.8746	0.2847	0.7675	1.9465	0	513415	649324	385220	389154	200	1937313	0.25	0.37	0.19	0.18	0.37	0.8748	0.3191	0.7437	1.9088	86	98	184	2692	3264	3402	4214	13572	0.2	0.24	0.25	0.31	0.56	0.8846	0.2436	0.7923	1.9675	2	9	11	4612	4006	4941	5951	19510	0.23	0.21	0.26	0.3	0.56	0.9075	0.1239	0.8855	1.9827	75759	95607	21720	33154	56179	104154	57664	39250	61985	53125	39692	60278	44237	37280	29610	53983	41811	71520	71919	36397	74886	40330	87094	62475	69030	52486	25542	45663	28402	50534	61986	45983	61723	26898	40719	82535	46895	43032	45476	96253	57039	53904	47035	85419	51633	43145	48495	43727	28055	38739	40953	73138	18540	39681	52585	46039	10081	41333	55461	22356	46179	10922	29646	23413
GCF_022539505.1	NC_061511	NC_061511.1	Lolium rigidum isolate FL_2022 chromosome 4; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	77953310	77971227	63393071	63403791	371100	283092499	0.28	0.28	0.22	0.22	0.45	0.9408	0.0002	0.9998	1.9916	3431	3396	6827	6514846	7302210	5749358	5825975	7400	25399789	0.24	0.27	0.24	0.25	0.49	0.9123	0.1363	0.8775	1.9682	3928	2725	2749	5474	1636644	1525317	1910848	1978509	0	7051318	0.25	0.23	0.24	0.27	0.52	0.8687	0.2835	0.7693	1.9395	5	3239729	3827991	2478327	2451460	5800	12003307	0.26	0.36	0.2	0.19	0.38	0.8735	0.3007	0.7559	1.9168	536	509	1045	274307	321178	223085	241372	1059942	0.26	0.27	0.22	0.25	0.47	0.875	0.2878	0.7651	1.9479	12	376788	486327	275816	284038	100	1423069	0.25	0.37	0.19	0.18	0.37	0.8751	0.3217	0.7414	1.9113	94	80	174	2492	3046	3321	4145	13004	0.19	0.23	0.26	0.32	0.58	0.8823	0.2558	0.7819	1.9606	23	11	34	13407	11712	14513	17521	57153	0.23	0.21	0.26	0.3	0.56	0.907	0.1264	0.884	1.9823	56081	67866	16192	24607	41353	76257	42813	28836	44632	38083	29601	44587	33064	27706	21844	39680	31180	52719	52746	27723	55633	30772	64126	46883	50143	37884	19404	34448	21279	36921	44457	34685	45369	20481	31128	60667	34882	31005	33368	70206	41377	40212	34687	63156	37476	32256	35903	30871	20742	29071	30539	53495	14123	30035	38337	33857	7148	31330	40913	17162	34472	7732	20242	17113
GCF_022539505.1	NC_061512	NC_061512.1	Lolium rigidum isolate FL_2022 chromosome 5; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	74827477	74884436	60657754	60681985	375400	271427052	0.28	0.28	0.22	0.22	0.45	0.9404	0.0006	0.9994	1.9913	3203	3178	6381	5846858	6575085	5162064	5239108	6500	22829615	0.24	0.27	0.24	0.25	0.49	0.9123	0.1353	0.8779	1.9677	1644	2569	2574	5143	1543087	1443364	1802049	1861983	0	6650483	0.25	0.23	0.24	0.27	0.51	0.8701	0.2803	0.7717	1.9404	0	2945934	3485069	2254341	2239071	5800	10930215	0.26	0.36	0.2	0.19	0.38	0.8734	0.2964	0.7588	1.9159	501	482	983	267749	311602	215216	232783	1027350	0.26	0.28	0.22	0.25	0.47	0.8731	0.2936	0.7614	1.9454	48	370961	473544	275533	281492	500	1402030	0.25	0.38	0.19	0.18	0.37	0.877	0.3144	0.7463	1.9098	79	74	153	2203	2720	2876	3605	11404	0.19	0.24	0.25	0.32	0.57	0.8892	0.2523	0.7845	1.964	11	3	14	2363	1993	2504	2996	9856	0.24	0.21	0.26	0.29	0.55	0.8993	0.1214	0.8872	1.9887	53613	64372	15555	23166	38841	71408	40327	27132	42412	37166	27666	41297	30933	25711	20516	37764	29210	49644	48931	26263	53032	28201	61386	43658	47379	35934	18548	33293	19657	35357	42005	33135	41965	19452	28367	56382	33200	29102	32275	66302	39855	37730	32048	58659	36426	30058	33700	29440	20152	28098	27842	49435	13580	28259	35929	32052	7091	29000	37963	16522	32728	7254	19415	16636
GCF_022539505.1	NC_061513	NC_061513.1	Lolium rigidum isolate FL_2022 chromosome 6; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	99807449	99588324	80957833	80966915	478500	361799021	0.28	0.28	0.22	0.22	0.45	0.9395	0.0012	0.9988	1.9915	4239	4179	8418	7999750	8960040	7067688	7158492	7600	31193570	0.24	0.27	0.24	0.25	0.49	0.9127	0.1346	0.8789	1.9686	18042	3456	3388	6844	2052516	1913637	2410540	2471273	0	8847966	0.25	0.23	0.24	0.27	0.51	0.8696	0.2815	0.7706	1.9404	0	3964862	4695783	3020505	3005134	5500	14691784	0.26	0.36	0.2	0.19	0.38	0.8738	0.296	0.7592	1.918	620	655	1275	335187	394360	273304	294503	1297354	0.26	0.28	0.22	0.24	0.47	0.8742	0.2873	0.7649	1.9477	73	552781	680883	413593	427445	600	2075302	0.25	0.37	0.19	0.19	0.37	0.8774	0.3122	0.747	1.9135	95	72	167	2382	2901	3146	3932	12361	0.19	0.23	0.25	0.32	0.57	0.8867	0.2449	0.7903	1.9638	9	19	28	8973	7947	9703	11727	38350	0.23	0.21	0.26	0.29	0.56	0.9026	0.1125	0.8959	1.9841	70345	84516	20724	31339	51802	94149	53068	35781	57050	49470	36583	54815	41949	35517	27494	49294	39369	65611	66916	34590	68784	37583	80836	56680	63900	48524	24410	43195	26014	46916	56024	42852	56881	26215	38659	74114	44249	40499	42659	88093	51866	50064	43118	78818	47446	40229	44275	39370	26297	36201	38290	65975	17638	37822	47418	43675	9339	38872	51626	21929	44408	9935	25973	22410
GCF_022539505.1	NC_061514	NC_061514.1	Lolium rigidum isolate FL_2022 chromosome 7; APGP_CSIRO_Lrig_0.1; whole genome shotgun sequence.	100039074	99914303	80994676	81000719	503500	362452272	0.28	0.28	0.22	0.22	0.45	0.9396	0.0007	0.9993	1.9913	4578	4591	9169	8402693	9418910	7389141	7492857	8900	32712501	0.24	0.27	0.25	0.25	0.49	0.9128	0.131	0.8815	1.9695	5813	3633	3608	7241	2174844	2022504	2541131	2631649	0	9370128	0.25	0.23	0.24	0.27	0.51	0.8696	0.2817	0.7708	1.9396	4	4246687	5028977	3242551	3209481	7600	15735296	0.26	0.36	0.2	0.19	0.38	0.8738	0.2934	0.7609	1.918	659	686	1345	363023	425131	296010	315393	1399557	0.26	0.28	0.22	0.24	0.47	0.8736	0.2871	0.7655	1.9467	31	478594	617631	342212	352562	200	1791199	0.25	0.37	0.19	0.18	0.37	0.8761	0.3194	0.7432	1.9089	89	80	169	2512	2879	3177	3919	12487	0.2	0.23	0.26	0.31	0.57	0.8842	0.2193	0.8096	1.9688	132	146	278	12629	11080	13594	15709	53012	0.24	0.21	0.26	0.29	0.55	0.8953	0.1186	0.8889	1.9895	73537	89757	21560	33355	55685	99603	56798	38079	59090	52794	38029	58979	44232	37953	29453	53479	41997	69793	69739	35887	73198	39051	83678	60528	65707	51373	25592	45685	27984	49815	58156	45133	59857	27385	40517	79052	46078	41382	44625	91982	56088	52305	45961	83317	51677	42721	47657	42200	27892	38278	41857	72006	19009	40446	50558	45808	10098	42237	55404	23401	45558	10944	28257	23689