GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_012489685.1	NC_080041	NC_080041.1	Lotus japonicus ecotype B-129 chromosome 1; LjGifu_v1.2.	42781715	42755757	25826378	25848898	37900	137250648	0.31	0.31	0.19	0.19	0.38	0.9373	0.0007	0.9993	1.9555	5029	5076	10105	11025210	12670250	6868515	7528318	2300	38094593	0.28	0.32	0.18	0.21	0.39	0.9084	0.1717	0.8484	1.9497	34972	4267	4329	8596	3200421	3098989	2274656	2708134	11282200	0.29	0.28	0.2	0.24	0.43	0.8723	0.3049	0.7547	1.9491	48	4941873	6085241	2797025	2953317	2000	16779456	0.28	0.4	0.16	0.16	0.32	0.8584	0.3278	0.7372	1.8635	627	632	1259	493921	566495	317734	350649	1728799	0.28	0.31	0.19	0.21	0.4	0.8709	0.3252	0.7397	1.9325	0	475813	625021	272240	307760	0	1680834	0.26	0.41	0.16	0.17	0.33	0.8591	0.3743	0.7059	1.8615	65	64	129	1904	2290	2404	3004	9602	0.2	0.24	0.25	0.31	0.56	0.8823	0.2473	0.7898	1.9666	0	1	1	31	28	26	33	118	0.26	0.24	0.22	0.28	0.5	0.8929	0.1695	0.8456	1.994	100245	114887	34429	60112	69219	98493	83241	88772	51135	66114	90222	112659	76097	18108	54005	63769	78755	71544	73971	88831	57364	64944	55598	112021	62404	44765	38083	98707	58790	74033	56100	81059	38449	50156	62281	52406	40028	29568	40195	40793	46280	19119	104074	40070	45959	88352	46631	73850	51418	62206	21867	23284	48354	60915	59496	60558	17073	17994	21635	22566	83397	20223	42142	20392
GCF_012489685.1	NC_080042	NC_080042.1	Lotus japonicus ecotype B-129 chromosome 2; LjGifu_v1.2.	29325422	29258028	18504544	18499471	41000	95628465	0.31	0.31	0.19	0.19	0.39	0.9322	0.0013	0.9987	1.9627	2814	3452	6266	6316766	7170168	4005391	4380088	700	21873113	0.28	0.31	0.19	0.21	0.41	0.9079	0.165	0.8543	1.9551	9989	2271	2517	4788	1793515	1727975	1269782	1505661	6296933	0.29	0.28	0.2	0.24	0.43	0.8722	0.306	0.7539	1.9485	34	2735874	3324357	1582822	1667260	400	9310713	0.28	0.4	0.15	0.16	0.32	0.8582	0.3298	0.736	1.8626	402	377	779	249601	293463	170208	181484	894756	0.28	0.31	0.19	0.21	0.4	0.8684	0.3438	0.7267	1.9305	0	318433	406127	190866	216316	200	1131942	0.27	0.41	0.16	0.17	0.33	0.8599	0.3752	0.7033	1.8636	27	38	65	943	1154	1193	1486	4776	0.2	0.24	0.25	0.31	0.56	0.8879	0.2333	0.7996	1.9702	88	491	579	69522	67168	67951	85166	289807	0.23	0.23	0.25	0.28	0.54	0.9011	0.0785	0.9266	1.9933	55142	66072	19295	33818	38255	54585	47016	50058	28307	36606	51300	63709	41997	10079	30452	35874	44667	39547	41297	50149	31717	36113	30788	62016	34681	24731	21729	54600	33170	41464	31461	44738	21519	27360	34561	29380	22172	16682	22791	22900	25208	10511	58793	22151	25357	48342	26429	41091	28266	34121	11804	13039	27336	34660	32732	34532	9261	9830	11965	12435	47125	11157	23233	11335
GCF_012489685.1	NC_080043	NC_080043.1	Lotus japonicus ecotype B-129 chromosome 3; LjGifu_v1.2.	30347652	30369876	18417068	18469739	30800	97635135	0.31	0.31	0.19	0.19	0.38	0.9387	0.0018	0.9982	1.9564	3462	3399	6861	7677175	8768251	4754735	5198751	900	26399812	0.28	0.32	0.18	0.21	0.39	0.9085	0.1691	0.8505	1.9494	33996	2981	2944	5925	2217831	2129372	1563514	1854306	7765023	0.29	0.28	0.19	0.24	0.43	0.872	0.3003	0.7578	1.9498	12	3570375	4368950	2017287	2126611	900	12084123	0.28	0.4	0.15	0.16	0.32	0.8589	0.3218	0.7411	1.8631	396	373	769	267022	313708	176387	192835	949952	0.28	0.32	0.19	0.21	0.4	0.8712	0.3363	0.7327	1.9292	0	297539	375580	171579	191356	0	1036054	0.26	0.41	0.16	0.17	0.32	0.8589	0.3799	0.701	1.8578	52	51	103	1494	1823	1930	2422	7669	0.19	0.24	0.25	0.32	0.57	0.8844	0.237	0.7966	1.9685	2	2	4	137	136	127	150	550	0.25	0.25	0.23	0.27	0.5	0.8898	0.099	0.9081	1.995	67749	80678	23265	41898	47574	67181	58471	60677	34784	44881	63247	78485	53235	11885	37507	44286	54641	48860	50301	61508	39072	44289	38066	76759	43586	30424	26399	66106	41514	51153	38662	56527	26005	34381	42716	36117	27529	20269	27507	27904	31847	13030	72954	27329	31322	60109	32616	51234	34871	42855	14687	15766	33086	42640	40117	41482	11552	11835	14089	14865	58954	14397	29619	13644
GCF_012489685.1	NC_080044	NC_080044.1	Lotus japonicus ecotype B-129 chromosome 4; LjGifu_v1.2.	25949789	25864836	15952255	15912261	32200	83711341	0.31	0.31	0.19	0.19	0.38	0.9372	0.0029	0.9971	1.9584	2934	2928	5862	6300890	7206059	3939836	4321771	900	21769456	0.28	0.32	0.19	0.21	0.39	0.9084	0.1725	0.8479	1.9507	14701	2531	2553	5084	1895241	1823275	1352391	1608118	6679025	0.29	0.28	0.2	0.24	0.43	0.8723	0.303	0.7556	1.9499	2	2905687	3588848	1647963	1747223	700	9890421	0.28	0.4	0.16	0.16	0.32	0.8579	0.3313	0.7351	1.8634	324	315	639	202525	234289	135397	145865	718076	0.28	0.32	0.19	0.21	0.4	0.8687	0.3377	0.7319	1.9288	0	219277	284032	126266	144346	0	773921	0.27	0.41	0.16	0.17	0.32	0.8582	0.3819	0.699	1.8586	42	39	81	1218	1414	1483	1896	6011	0.2	0.24	0.25	0.32	0.56	0.8857	0.2495	0.7871	1.9685	0	4	4	2248	2083	1948	2482	8761	0.26	0.24	0.22	0.28	0.5	0.9189	0.1507	0.8622	1.9938	58451	69753	19940	35358	41217	58702	50302	52486	30836	38926	53517	67078	44391	10537	31441	38067	46569	42245	43879	51606	34079	38759	33803	66210	37903	26478	22766	57039	34523	43901	33672	47247	23055	29079	35991	31664	24188	17591	23952	24981	27451	11255	62014	23978	27065	51968	28082	43324	29743	36521	12950	14271	28005	35827	34778	34723	9947	10901	13128	13325	49260	12239	24967	12036
GCF_012489685.1	NC_080045	NC_080045.1	Lotus japonicus ecotype B-129 chromosome 5; LjGifu_v1.2.	21142417	21125425	12926226	12943101	24300	68161469	0.31	0.31	0.19	0.19	0.38	0.9398	0.0011	0.9989	1.9576	2328	2255	4583	5005611	5734319	3130217	3442383	700	17313230	0.28	0.32	0.19	0.21	0.39	0.9082	0.1752	0.8456	1.9506	16558	1987	1924	3911	1472657	1409544	1044839	1244871	5171911	0.29	0.28	0.2	0.24	0.43	0.8724	0.3072	0.7528	1.949	9	2370541	2907849	1352233	1438083	700	8069406	0.28	0.4	0.16	0.17	0.32	0.8586	0.3312	0.7347	1.8636	267	282	549	178428	211558	119153	128244	637383	0.28	0.32	0.19	0.21	0.4	0.8694	0.3372	0.7314	1.9291	184	175960	231816	101358	113210	0	622344	0.26	0.41	0.16	0.17	0.32	0.8572	0.3806	0.7003	1.8593	43	33	76	1063	1394	1373	1757	5587	0.19	0.25	0.25	0.31	0.56	0.8874	0.2926	0.7572	1.9635	7	1	8	3074	2946	2856	3683	12559	0.24	0.24	0.23	0.29	0.52	0.9073	0.1428	0.87	1.9925	45382	53681	15516	27885	31543	45564	38795	40174	23525	30173	41636	52208	34737	8107	24819	29151	36420	33127	33133	39774	26417	29878	25258	51139	29436	20879	17292	44462	26624	33573	25819	36242	17767	22353	28561	24037	18630	13597	18262	18895	21282	8722	48083	17966	20749	39896	21597	34216	23151	28341	10082	10994	21579	28128	27196	28095	8152	8529	9846	10180	38394	9713	20290	9361
GCF_012489685.1	NC_080046	NC_080046.1	Lotus japonicus ecotype B-129 chromosome 6; LjGifu_v1.2.	20978516	20980679	12956472	12971180	24000	67910847	0.31	0.31	0.19	0.19	0.38	0.9385	0.0006	0.9994	1.9592	2309	2354	4663	4844858	5560999	3034025	3331292	400	16771574	0.28	0.32	0.19	0.21	0.39	0.9081	0.1748	0.8462	1.9504	4196	1934	2047	3981	1487152	1438591	1051613	1250580	5227936	0.29	0.28	0.2	0.24	0.43	0.8721	0.3027	0.7563	1.9492	108	2126591	2633795	1205092	1273572	300	7239350	0.28	0.4	0.15	0.16	0.32	0.8579	0.3315	0.7346	1.8625	286	260	546	176491	207056	116857	124599	625003	0.28	0.32	0.19	0.21	0.4	0.8683	0.3393	0.7299	1.929	0	195626	253565	113111	126438	0	688740	0.26	0.41	0.16	0.17	0.32	0.8586	0.3842	0.6977	1.8581	32	22	54	802	912	1002	1242	3958	0.2	0.23	0.25	0.31	0.57	0.8905	0.2573	0.7811	1.9678	32	14	46	15959	15214	15136	19477	65786	0.24	0.23	0.24	0.29	0.53	0.9079	0.1248	0.8858	1.9886	46332	54759	15786	28000	32025	45460	38921	42356	23696	30348	42385	52049	34600	8149	24563	29635	36535	33251	34144	41218	26677	29908	25941	51681	28970	20769	17543	45939	27655	34553	26456	37724	17906	23417	28651	24320	18353	13619	19006	19264	20926	8613	48795	18575	21134	40776	21595	33806	23808	28935	9537	10573	22266	28331	27255	27907	7693	8205	9638	10202	38769	9464	19454	9055