GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_011075055.1	NC_058137	NC_058137.1	Mangifera indica cultivar Alphonso chromosome 1; CATAS_Mindica_2.1; whole genome shotgun sequence.	9916893	9971314	4765533	4794860	8000	29456600	0.34	0.34	0.16	0.16	0.32	0.9407	0.0058	0.9942	1.9092	1375	1300	2675	2845468	3350912	1637692	1866074	1000	9701146	0.29	0.33	0.18	0.2	0.38	0.9091	0.1734	0.8457	1.9426	6043	1247	1181	2428	955735	925198	646794	768580	3296307	0.29	0.28	0.19	0.24	0.43	0.8729	0.2999	0.7576	1.9502	0	1244892	1650693	633623	717430	1000	4247638	0.28	0.41	0.15	0.16	0.31	0.8547	0.3565	0.7159	1.8483	0	83	78	161	38589	41639	22685	24937	127850	0.3	0.31	0.18	0.2	0.39	0.8745	0.2934	0.7638	1.925	96	41265	48517	19823	22039	131644	0.29	0.41	0.14	0.16	0.3	0.8511	0.3326	0.7306	1.8374	20	19	39	586	690	713	913	2902	0.2	0.24	0.25	0.32	0.56	0.8876	0.2439	0.7908	1.9703	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27323	32026	10609	18322	20425	27532	23945	27832	13329	18374	29829	35049	23938	5294	17553	18462	24882	18456	20877	28355	17120	17774	14751	32196	18712	10779	10823	29823	17770	22085	16285	26320	10612	15429	18166	14210	10190	7962	11214	12059	13763	4120	33463	11955	12657	25425	12583	22469	15006	17618	7050	5470	16192	16925	15248	18119	4669	4991	5765	6110	24955	6347	11617	6259
GCF_011075055.1	NC_058138	NC_058138.1	Mangifera indica cultivar Alphonso chromosome 2; CATAS_Mindica_2.1; whole genome shotgun sequence.	8240664	8222971	3964042	3963220	7000	24397897	0.34	0.34	0.16	0.16	0.32	0.9352	0.0012	0.9988	1.9096	1146	1112	2258	2878732	3343756	1578958	1801159	0	9602605	0.29	0.34	0.17	0.2	0.37	0.9078	0.1758	0.8438	1.9379	66024	1014	972	1986	818577	790140	528184	640251	2777152	0.29	0.28	0.19	0.24	0.43	0.872	0.3043	0.7547	1.9477	0	1153924	1506864	571955	648182	0	3880925	0.28	0.41	0.14	0.16	0.31	0.8546	0.3446	0.724	1.8472	0	95	97	192	56839	62293	33285	38452	190869	0.3	0.31	0.18	0.21	0.39	0.8751	0.3017	0.7563	1.929	144	93281	106716	42310	45458	287765	0.28	0.41	0.15	0.16	0.3	0.8551	0.333	0.7327	1.8437	16	21	37	533	641	698	865	2737	0.19	0.23	0.25	0.32	0.57	0.8833	0.2299	0.801	1.9694	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24049	28147	9477	15366	17585	23097	19642	25155	10693	15309	26208	30172	19875	4089	14707	14787	20376	15578	17199	24270	12990	14830	11841	27655	14650	8754	9749	26312	15544	17945	13615	21387	8843	14415	15641	11429	8387	6057	9651	9382	11216	3141	29359	9366	10654	22189	10257	18352	13172	14346	5451	4161	15394	13951	12407	15424	4150	4008	4320	5032	21524	5328	9594	5264
GCF_011075055.1	NC_058139	NC_058139.1	Mangifera indica cultivar Alphonso chromosome 3; CATAS_Mindica_2.1; whole genome shotgun sequence.	7747099	7780096	3780948	3826250	5000	23139393	0.33	0.34	0.16	0.17	0.33	0.9424	0.0081	0.992	1.9136	1203	1141	2344	2680771	3182943	1539291	1759401	1000	9163406	0.29	0.34	0.18	0.2	0.38	0.9095	0.1769	0.8426	1.942	73945	1095	1032	2127	837355	801664	560847	678461	2878327	0.29	0.28	0.19	0.24	0.43	0.8717	0.3057	0.7538	1.9497	0	1155081	1559498	596213	674547	500	3985839	0.28	0.41	0.15	0.16	0.31	0.8556	0.3538	0.7174	1.8513	0	70	82	152	39734	44709	24576	27091	136110	0.29	0.31	0.19	0.2	0.39	0.8734	0.282	0.7722	1.9306	0	34350	43798	17394	19490	115032	0.28	0.41	0.15	0.16	0.31	0.8497	0.3531	0.7184	1.8414	17	13	30	445	518	566	712	2241	0.2	0.23	0.25	0.32	0.57	0.8847	0.2548	0.7817	1.9656	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	24637	28863	9676	15901	18355	24144	21314	24183	11468	16089	25439	30324	20372	4305	15033	15150	21148	16994	17619	23891	15217	15933	12484	28050	16765	9276	9543	25479	15552	19117	13949	21673	9383	13714	15935	12167	9016	6945	9578	10436	11906	3487	29688	10404	11394	22598	11374	20071	13200	15566	5757	4675	13805	15057	13559	16305	4137	4287	4824	5327	21886	5617	10897	5370
GCF_011075055.1	NC_058140	NC_058140.1	Mangifera indica cultivar Alphonso chromosome 4; CATAS_Mindica_2.1; whole genome shotgun sequence.	7241255	7226207	3519876	3516662	3500	21507500	0.34	0.34	0.16	0.16	0.33	0.9401	0.0015	0.9985	1.912	1039	1094	2133	2435974	2898271	1400469	1597456	1000	8333170	0.29	0.34	0.18	0.2	0.38	0.91	0.1738	0.8451	1.9415	16541	958	972	1930	756120	738468	513902	620539	2629029	0.29	0.28	0.19	0.24	0.43	0.8708	0.3063	0.7538	1.9492	0	1140655	1514995	586075	659419	500	3901644	0.28	0.41	0.15	0.16	0.31	0.855	0.3539	0.7178	1.849	0	51	73	124	27850	30450	16270	18598	93168	0.3	0.32	0.18	0.21	0.39	0.8736	0.2848	0.7665	1.9304	0	32619	40070	16003	18331	107023	0.28	0.41	0.14	0.17	0.31	0.8585	0.3453	0.7266	1.8495	14	21	35	494	639	630	817	2580	0.19	0.25	0.24	0.32	0.56	0.8888	0.2718	0.7698	1.9689	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22381	25908	8540	14807	16650	21813	20045	22041	10491	15063	22587	27693	18690	4133	13409	13696	19861	15006	16547	22628	13762	14531	11549	25993	14937	8512	8365	23101	14667	17729	12798	20189	8575	12401	14237	11145	8205	6312	9257	9483	10840	3329	26056	9734	10486	20670	10450	17871	12040	14119	5590	4390	12782	13683	12408	14176	3811	4162	4583	4968	19456	5109	9893	5137
GCF_011075055.1	NC_058141	NC_058141.1	Mangifera indica cultivar Alphonso chromosome 5; CATAS_Mindica_2.1; whole genome shotgun sequence.	7055002	7045264	3488713	3491392	3000	21083371	0.33	0.33	0.17	0.17	0.33	0.9414	0.0011	0.9989	1.916	1063	1150	2213	2320990	2775378	1355770	1549666	500	8002304	0.29	0.34	0.18	0.2	0.37	0.91	0.1714	0.8466	1.9422	9596	949	1029	1978	759419	731543	513554	617859	2622375	0.29	0.28	0.19	0.24	0.43	0.8721	0.3042	0.7554	1.9499	0	968993	1330052	506695	570412	500	3376652	0.27	0.42	0.15	0.16	0.31	0.8541	0.358	0.7144	1.8494	0	76	82	158	46514	50660	27368	30995	155537	0.3	0.31	0.18	0.21	0.39	0.8766	0.2605	0.7854	1.9345	0	40932	50609	19633	22577	133751	0.29	0.41	0.14	0.16	0.3	0.8537	0.358	0.7159	1.8379	9	18	27	395	482	503	643	2023	0.19	0.24	0.25	0.32	0.57	0.8916	0.2528	0.7822	1.9695	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22574	25692	8758	14659	16912	21439	19699	21518	10586	14914	22900	27325	18788	4176	13679	13837	19726	14873	15855	22152	13782	14323	11150	25980	15473	8623	8636	22505	14290	17616	12599	19596	8545	12530	14489	11108	8104	6413	8983	9355	10888	3261	25994	9276	10369	20538	10423	18315	11960	14452	5352	4226	12708	14185	12615	14526	3989	4095	4399	5127	19686	5146	10286	5263
GCF_011075055.1	NC_058142	NC_058142.1	Mangifera indica cultivar Alphonso chromosome 6; CATAS_Mindica_2.1; whole genome shotgun sequence.	6334773	6376338	3031456	3065893	3500	18811960	0.34	0.34	0.16	0.16	0.32	0.9398	0.0089	0.9911	1.9088	925	778	1703	2238323	2565650	1230560	1400362	500	7435395	0.29	0.33	0.17	0.2	0.37	0.909	0.1693	0.849	1.9409	36284	824	701	1525	634395	610146	413522	503284	2161347	0.29	0.28	0.19	0.24	0.43	0.8721	0.2976	0.7595	1.9497	4	871424	1131156	436539	491737	500	2931356	0.28	0.41	0.15	0.16	0.31	0.8544	0.3444	0.7244	1.8493	0	64	56	120	29883	32625	18028	19948	100484	0.3	0.32	0.18	0.2	0.39	0.8754	0.2683	0.7786	1.9338	182	25096	30892	12489	15254	83731	0.29	0.41	0.15	0.16	0.31	0.8556	0.3132	0.7454	1.8502	10	8	18	256	313	345	426	1340	0.19	0.23	0.26	0.32	0.58	0.8891	0.2265	0.8027	1.9672	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18417	21215	7078	12015	13700	17823	15891	19115	8445	12677	19805	23504	15378	3266	11226	11680	15253	12183	13653	18594	11200	11160	9531	20949	11842	6747	7111	20188	12054	14420	10495	16916	6638	10686	12159	9162	6485	4749	7261	7365	8940	2549	22977	7670	8463	16593	8375	15042	10265	11684	4196	3291	11458	10806	9817	11311	3175	3138	3436	3869	16702	4224	8210	4092
GCF_011075055.1	NC_058143	NC_058143.1	Mangifera indica cultivar Alphonso chromosome 7; CATAS_Mindica_2.1; whole genome shotgun sequence.	6963177	6961590	3347187	3348122	3044	20623120	0.34	0.34	0.16	0.16	0.32	0.936	0.0003	0.9997	1.9093	905	1127	2032	2495929	2878560	1361637	1545251	0	8281377	0.28	0.32	0.18	0.21	0.39	0.9072	0.1679	0.8505	1.943	205705	803	780	1583	642263	613488	419493	510368	2185612	0.29	0.28	0.19	0.24	0.43	0.871	0.3079	0.7524	1.9476	0	967618	1275152	483889	552304	0	3278963	0.28	0.41	0.15	0.16	0.31	0.8557	0.3495	0.7205	1.8507	0	71	96	167	39557	43639	23762	26355	133313	0.29	0.31	0.19	0.2	0.39	0.8717	0.2993	0.7574	1.9295	211	41939	50887	19776	22350	134952	0.29	0.41	0.15	0.16	0.3	0.8529	0.3283	0.7355	1.849	9	11	20	283	326	389	468	1466	0.19	0.22	0.27	0.32	0.59	0.8679	0.2527	0.7891	1.9561	223	223	6203	5469	7230	7631	26533	0.23	0.21	0.27	0.29	0	0.56	0.9032	0.0934	0.9121	1.9866	18563	22173	7390	11886	13900	18320	15764	19408	8462	12225	19650	24490	15435	3181	11236	11185	16089	12424	12922	18674	11371	11790	9672	21959	12237	6940	7509	19630	12040	14395	10621	16961	6847	10687	12285	8944	6348	4763	7263	7693	9033	2722	23494	7982	8289	17196	8204	14874	10110	11694	4300	3280	10999	11492	10038	12146	3401	3209	3452	4019	16743	4125	7966	4122
GCF_011075055.1	NC_058144	NC_058144.1	Mangifera indica cultivar Alphonso chromosome 8; CATAS_Mindica_2.1; whole genome shotgun sequence.	6068332	6068442	3049159	3054536	3000	18243469	0.33	0.33	0.17	0.17	0.33	0.9438	0.0009	0.9991	1.9195	1042	959	2001	1907598	2274584	1125920	1291716	0	6599818	0.29	0.33	0.18	0.2	0.38	0.9098	0.1748	0.8445	1.9439	3339	922	865	1787	665843	638965	449271	542052	2296131	0.29	0.28	0.19	0.24	0.43	0.8721	0.3064	0.7538	1.9496	0	789551	1078812	411763	467929	0	2748055	0.27	0.41	0.15	0.16	0.31	0.8546	0.3531	0.718	1.8511	0	82	62	144	35089	38515	20581	23127	117312	0.3	0.32	0.18	0.2	0.38	0.8775	0.274	0.7758	1.9299	150	35036	43228	17557	19693	115514	0.29	0.4	0.14	0.17	0.31	0.8584	0.3271	0.7377	1.8513	18	16	34	469	595	641	805	2510	0.19	0.24	0.26	0.32	0.58	0.8806	0.296	0.7521	1.957	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	19355	22796	7590	12879	14541	19348	17212	18964	9099	12959	20200	24949	16154	3840	11945	12186	17297	12997	13717	19523	11667	12666	9872	23171	13483	7534	7540	19507	12585	15228	11052	17193	7210	10532	12175	9966	7184	5629	7853	8225	9689	3045	22952	8342	9227	18150	9091	15942	10506	12625	4781	3827	11128	12331	10843	12719	3297	3537	3905	4423	17192	4461	8487	4662
GCF_011075055.1	NC_058145	NC_058145.1	Mangifera indica cultivar Alphonso chromosome 9; CATAS_Mindica_2.1; whole genome shotgun sequence.	6129257	6170604	2967216	2961697	4500	18233274	0.34	0.34	0.16	0.16	0.33	0.9412	0.0043	0.9957	1.9099	856	821	1677	1922470	2283280	1103042	1262626	500	6571918	0.29	0.33	0.18	0.2	0.38	0.9088	0.1727	0.846	1.9424	4659	773	747	1520	588627	564947	400433	481062	2035069	0.29	0.28	0.19	0.24	0.43	0.8717	0.3029	0.7554	1.9508	0	863907	1149398	443799	503199	500	2960803	0.28	0.41	0.14	0.16	0.31	0.8555	0.3536	0.7184	1.8484	0	54	44	98	24720	26822	14425	15953	81920	0.29	0.32	0.19	0.2	0.39	0.8716	0.2947	0.7616	1.9261	140	62763	70275	30229	31281	194548	0.29	0.42	0.14	0.15	0.29	0.849	0.3375	0.7308	1.8219	11	17	28	410	488	525	658	2081	0.2	0.23	0.25	0.32	0.57	0.8882	0.2344	0.7965	1.9695	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17351	20566	6471	11426	13054	17199	15497	16666	8084	11609	17878	21532	14599	3084	10487	11128	15158	11694	12824	17122	10642	11088	8907	19948	11907	6677	6363	17247	11136	13720	9798	15527	6649	9438	10868	8912	6146	4950	7086	7651	8400	2447	20369	7733	7946	15657	8032	13809	9061	10892	4329	3415	9521	10856	9859	11462	2910	3201	3619	3943	15305	3908	7558	3940
GCF_011075055.1	NC_058146	NC_058146.1	Mangifera indica cultivar Alphonso chromosome 10; CATAS_Mindica_2.1; whole genome shotgun sequence.	5940567	5992575	2841404	2873454	4500	17652500	0.34	0.34	0.16	0.16	0.32	0.9394	0.01	0.9901	1.9084	786	756	1542	1915911	2222740	1060554	1204246	500	6403951	0.29	0.33	0.18	0.2	0.38	0.9085	0.1773	0.8423	1.9414	118072	706	681	1387	522539	506312	353410	424224	1806485	0.29	0.28	0.19	0.24	0.43	0.8726	0.3004	0.7573	1.9509	0	760852	995339	382284	435119	500	2574094	0.28	0.41	0.15	0.16	0.31	0.8549	0.3552	0.7167	1.8501	0	50	51	101	28624	32134	17124	19263	97145	0.3	0.31	0.19	0.2	0.39	0.878	0.2782	0.7716	1.9331	0	35431	42699	16899	19176	114205	0.28	0.42	0.14	0.16	0.3	0.8539	0.3493	0.7214	1.8341	11	14	25	335	441	468	589	1833	0.18	0.24	0.26	0.32	0.58	0.8924	0.2678	0.7718	1.9627	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15165	17654	5671	9898	11438	15572	13475	15166	7311	10091	16188	19108	12847	2821	9289	9673	13312	10370	11119	15405	9415	9554	7892	17741	10475	5803	5700	16388	9988	11860	8927	13884	5989	8519	9801	7772	5672	4268	6199	6742	7304	2326	18287	6750	6937	14412	7049	11993	8279	9860	3881	3155	8825	9115	7991	9955	2773	2695	3251	3535	13896	3590	6837	3490
GCF_011075055.1	NC_058147	NC_058147.1	Mangifera indica cultivar Alphonso chromosome 11; CATAS_Mindica_2.1; whole genome shotgun sequence.	5749553	5756169	2809892	2825960	3000	17144574	0.34	0.34	0.16	0.16	0.33	0.9404	0.0034	0.9966	1.9136	727	753	1480	1737449	2018241	996280	1119019	1000	5871989	0.29	0.33	0.18	0.2	0.37	0.9111	0.1651	0.852	1.9427	7454	655	674	1329	544360	531395	366847	436855	1879457	0.29	0.28	0.19	0.24	0.43	0.8736	0.2917	0.7634	1.9506	591	728369	949302	373927	411686	1000	2464284	0.28	0.41	0.15	0.16	0.31	0.8552	0.3482	0.7214	1.852	0	52	51	103	23239	25938	14044	15658	78879	0.3	0.32	0.18	0.21	0.39	0.8714	0.2774	0.7737	1.9279	37	35054	40705	18036	19958	113753	0.29	0.41	0.15	0.16	0.31	0.8568	0.3123	0.7471	1.8531	4	7	11	151	199	206	262	818	0.18	0.24	0.26	0.32	0.58	0.8598	0.3461	0.7204	1.9472	2	2	818	684	910	1127	3539	0.23	0.21	0.26	0.3	0	0.56	0.8961	0.1135	0.8962	1.9837	16473	18016	6229	10537	11418	14988	13570	16416	7709	10358	17243	19367	13563	3270	9925	10229	14098	10477	11475	16562	9798	10450	8160	18001	10695	5955	6393	16908	10079	12261	8874	14688	5903	8995	10406	7933	5671	4540	6578	6714	7706	2446	19249	6879	7516	14706	7381	12667	8888	10058	3955	3003	9560	9774	8592	10509	2748	2858	3142	3568	14147	3865	6768	3692
GCF_011075055.1	NC_058148	NC_058148.1	Mangifera indica cultivar Alphonso chromosome 12; CATAS_Mindica_2.1; whole genome shotgun sequence.	5393980	5379297	2627518	2626171	3000	16029966	0.34	0.34	0.16	0.16	0.33	0.9346	0.0016	0.9984	1.9126	761	810	1571	1717732	2052912	990085	1142950	0	5903679	0.29	0.34	0.18	0.2	0.38	0.9096	0.1749	0.844	1.942	1694	683	724	1407	546822	527830	371268	445729	1891649	0.29	0.28	0.19	0.24	0.43	0.8722	0.2994	0.7587	1.9501	0	754688	1019786	385662	445850	0	2605986	0.28	0.41	0.15	0.16	0.31	0.855	0.3541	0.7172	1.8512	0	53	52	105	28440	29777	17049	18907	94173	0.3	0.31	0.18	0.21	0.39	0.8761	0.2775	0.7723	1.9346	0	31919	39272	15646	18141	104978	0.28	0.41	0.14	0.17	0.31	0.8581	0.3423	0.7245	1.8509	11	12	23	340	410	420	526	1696	0.2	0.24	0.25	0.31	0.56	0.8922	0.2231	0.8078	1.9739	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15952	18663	5935	10264	11738	15391	13625	16003	7866	10915	16857	19347	13470	3032	9866	10311	14175	10653	11679	16021	9915	10492	8148	18171	11144	6362	6000	16924	10308	12809	9048	14317	5811	9015	10398	8095	5945	4527	6582	7145	7968	2618	18864	7235	7768	14517	7401	13125	8605	10355	3995	3293	9029	9700	8759	10035	2903	3181	3342	3570	14361	3892	7254	3799
GCF_011075055.1	NC_058149	NC_058149.1	Mangifera indica cultivar Alphonso chromosome 13; CATAS_Mindica_2.1; whole genome shotgun sequence.	5219765	5212014	2517286	2506929	2000	15457994	0.34	0.34	0.16	0.16	0.33	0.9343	0.0028	0.9972	1.9097	674	629	1303	1495778	1792896	866675	987537	500	5143386	0.29	0.34	0.18	0.2	0.37	0.9101	0.174	0.8447	1.9408	3577	611	581	1192	483883	471953	329423	394375	1679634	0.29	0.28	0.19	0.24	0.43	0.8722	0.2956	0.7604	1.9511	0	710646	951339	364092	408005	500	2434582	0.28	0.41	0.15	0.16	0.31	0.8549	0.3515	0.7191	1.8494	0	44	35	79	19210	21025	11299	12827	64361	0.3	0.32	0.18	0.2	0.38	0.8753	0.2854	0.7664	1.9298	0	20305	24077	9587	10744	64713	0.28	0.41	0.14	0.16	0.31	0.8559	0.3532	0.7192	1.8474	8	5	13	164	240	242	315	961	0.17	0.25	0.25	0.33	0.58	0.8911	0.3299	0.7289	1.9548	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14437	16156	5525	9232	10845	13552	12841	13958	6795	10135	14460	17282	12100	2681	8702	8678	12566	9418	10427	14433	8785	8956	7334	16214	9858	5406	5463	14777	9359	11299	7950	12827	5537	8016	9199	7185	5184	4019	5928	6050	6962	2057	16864	6245	6812	13055	6439	11537	7752	9235	3581	2792	8075	9009	7566	9315	2609	2554	2866	3066	12564	3517	6821	3169
GCF_011075055.1	NC_058150	NC_058150.1	Mangifera indica cultivar Alphonso chromosome 14; CATAS_Mindica_2.1; whole genome shotgun sequence.	4984921	4979928	2417835	2422525	5000	14810209	0.34	0.34	0.16	0.16	0.33	0.9406	0.0015	0.9985	1.9116	694	740	1434	1532524	1807383	871908	1000646	0	5212461	0.29	0.34	0.17	0.2	0.37	0.9087	0.1756	0.8439	1.941	13943	617	649	1266	482741	467476	322108	391358	1663683	0.29	0.28	0.19	0.24	0.43	0.8724	0.3048	0.755	1.9492	0	613837	829825	312245	356886	0	2112793	0.28	0.41	0.15	0.16	0.31	0.8558	0.3498	0.7205	1.8513	0	49	61	110	28967	31677	17223	18655	96522	0.3	0.31	0.18	0.2	0.39	0.8681	0.2861	0.7706	1.9243	0	41447	48560	18845	22407	131259	0.29	0.4	0.14	0.17	0.31	0.8591	0.334	0.7316	1.852	7	8	15	229	261	280	351	1121	0.2	0.23	0.25	0.31	0.57	0.8748	0.2758	0.7712	1.962	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13989	16560	5495	9173	10613	13963	12217	14192	6540	9529	14921	18274	11857	2628	8644	8959	12097	9518	10422	14571	8480	9028	7305	16748	9412	5334	5210	14615	9275	10925	8027	12916	5306	7962	8837	7229	5021	3842	5517	5829	6916	2086	17013	5940	6605	12969	6590	11401	7973	8870	3680	2750	8305	8707	7760	9123	2275	2588	2855	3140	12161	3130	5851	3189
GCF_011075055.1	NC_058151	NC_058151.1	Mangifera indica cultivar Alphonso chromosome 15; CATAS_Mindica_2.1; whole genome shotgun sequence.	5006760	4992644	2383727	2376329	6500	14765960	0.34	0.34	0.16	0.16	0.32	0.9389	0.003	0.997	1.9069	555	575	1130	1317582	1549756	754531	863020	500	4485389	0.29	0.33	0.18	0.2	0.38	0.9089	0.1692	0.8489	1.9423	9982	510	520	1030	414934	398479	276903	335073	1425389	0.29	0.28	0.19	0.24	0.43	0.8716	0.305	0.754	1.9492	0	597946	786763	307730	344640	0	2037079	0.28	0.41	0.15	0.16	0.31	0.8563	0.348	0.7219	1.853	0	28	41	69	16217	18187	9780	11095	55279	0.3	0.32	0.18	0.2	0.38	0.8684	0.3039	0.7542	1.9237	0	34782	39519	17290	19869	111460	0.28	0.41	0.15	0.16	0.31	0.8569	0.3272	0.7406	1.8477	6	7	13	196	227	229	305	957	0.2	0.24	0.24	0.32	0.56	0.8774	0.2405	0.7916	1.9727	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12396	14744	4626	7993	9207	12174	10693	12110	5474	7990	12362	15328	10135	2135	7144	7597	10351	8371	9130	12200	7528	7320	6348	13721	8155	4728	4552	12909	7786	9278	7136	11097	4555	6829	7960	6000	4405	3245	4883	5437	5753	1623	14806	5245	5421	11060	5533	9779	6467	7545	3008	2356	7004	7297	6961	7538	2014	2173	2400	2540	10628	2690	5078	2710
GCF_011075055.1	NC_058152	NC_058152.1	Mangifera indica cultivar Alphonso chromosome 16; CATAS_Mindica_2.1; whole genome shotgun sequence.	4680233	4658308	2238300	2234886	5500	13817227	0.34	0.34	0.16	0.16	0.32	0.9407	0.0031	0.9969	1.9084	533	653	1186	1444104	1653335	809062	907708	1000	4815209	0.29	0.33	0.18	0.2	0.38	0.9086	0.164	0.8536	1.9399	6785	443	547	990	404299	387207	268090	320425	1380021	0.29	0.28	0.19	0.24	0.43	0.8727	0.2978	0.7596	1.9494	0	655536	822272	330940	360653	500	2169901	0.28	0.41	0.15	0.16	0.31	0.8536	0.346	0.7243	1.8453	0	68	70	138	41183	45975	25236	28901	141295	0.29	0.32	0.18	0.21	0.39	0.8771	0.2851	0.7684	1.9321	0	33600	42137	17069	18705	111511	0.28	0.41	0.15	0.16	0.31	0.8547	0.3219	0.7404	1.8516	8	19	27	381	475	511	622	1989	0.19	0.24	0.26	0.31	0.57	0.8817	0.2335	0.8	1.9674	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11427	13223	4348	7538	8506	11507	9784	11820	5590	7923	12449	14940	9904	2183	7116	7591	10482	7386	8501	11787	7066	6934	6181	13293	7670	4394	4721	12049	7725	9261	7010	10913	4380	6489	7589	5738	4181	3240	4811	5012	5769	1737	14740	4830	5642	10564	5322	9920	6559	7734	2859	2242	6874	6732	6390	7263	2126	2096	2357	2528	10349	3003	5438	2860
GCF_011075055.1	NC_058153	NC_058153.1	Mangifera indica cultivar Alphonso chromosome 17; CATAS_Mindica_2.1; whole genome shotgun sequence.	4580162	4546170	2186045	2192896	1000	13506273	0.34	0.34	0.16	0.16	0.32	0.9425	0.0053	0.9947	1.9089	536	585	1121	1343844	1595462	772045	866891	0	4578242	0.29	0.34	0.18	0.2	0.38	0.9093	0.1751	0.8439	1.9417	15158	460	495	955	378479	369048	259016	306182	1312725	0.29	0.28	0.19	0.24	0.43	0.8712	0.2994	0.7584	1.9505	0	617044	807710	316817	351920	0	2093491	0.28	0.41	0.15	0.16	0.31	0.8565	0.3527	0.7186	1.8509	583	53	69	122	35510	40285	21452	23366	120613	0.28	0.32	0.19	0.21	0.4	0.8762	0.2798	0.7703	1.9354	190	36692	46578	20003	20704	123977	0.26	0.42	0.15	0.17	0.31	0.8581	0.3899	0.6929	1.8471	8	9	17	240	307	321	416	1284	0.19	0.24	0.25	0.32	0.57	0.89	0.2648	0.7755	1.9636	1	1	33	28	29	29	119	0.28	0.24	0.24	0.24	0	0.49	0.8809	0.082	0.9242	1.9971	10974	12764	4105	7327	8137	10631	9531	10940	5419	7837	11451	13607	9330	2058	6515	6964	9921	7237	8336	11162	6930	6878	5797	12297	7461	4249	4274	11708	7283	8789	6559	10150	4336	6326	7243	5705	4053	3266	4592	4635	5329	1637	12931	4874	5482	9915	4964	9002	6211	7118	2960	2198	6479	7049	5944	7453	2069	2015	2378	2332	9931	2900	5616	2583
GCF_011075055.1	NC_058154	NC_058154.1	Mangifera indica cultivar Alphonso chromosome 18; CATAS_Mindica_2.1; whole genome shotgun sequence.	4491722	4511849	2179528	2183455	5200	13371754	0.34	0.34	0.16	0.16	0.33	0.9392	0.0031	0.9969	1.911	548	501	1049	1187151	1400276	685399	779252	100	4052178	0.29	0.34	0.18	0.2	0.38	0.9091	0.1734	0.8452	1.9418	2860	491	441	932	370529	361289	251636	300777	1284231	0.29	0.28	0.19	0.24	0.43	0.872	0.3002	0.7571	1.9498	0	524600	681657	268331	300115	100	1774803	0.27	0.41	0.15	0.17	0.31	0.8555	0.3546	0.7173	1.8519	0	40	37	77	22560	25050	13966	14650	76226	0.29	0.31	0.19	0.2	0.39	0.8743	0.2672	0.7801	1.9379	0	18353	24061	8894	10107	61415	0.28	0.41	0.15	0.16	0.31	0.8554	0.3337	0.7318	1.8462	7	10	17	246	299	321	407	1273	0.19	0.23	0.25	0.32	0.57	0.8915	0.2346	0.7961	1.97	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10557	12540	4166	7283	7987	10976	9253	10716	5230	7218	11722	13654	9590	1914	6860	7021	10007	7204	8047	11256	6821	7154	5758	12699	7094	4121	4130	11744	6793	8692	6351	10355	4051	5963	6968	5553	3940	3144	4265	4607	5330	1592	12657	4691	4786	9788	4984	8731	5618	6887	2643	2103	6326	6749	6162	7017	1767	2043	2214	2359	9590	2342	4516	2475
GCF_011075055.1	NC_058155	NC_058155.1	Mangifera indica cultivar Alphonso chromosome 19; CATAS_Mindica_2.1; whole genome shotgun sequence.	4419663	4418980	2118333	2131990	4100	13093066	0.34	0.34	0.16	0.16	0.32	0.9325	0.0033	0.9967	1.9093	574	514	1088	1282387	1497708	726403	826296	0	4332794	0.29	0.34	0.18	0.2	0.37	0.9095	0.1706	0.8479	1.941	9694	497	467	964	401498	386845	266066	320467	1374876	0.29	0.28	0.19	0.24	0.43	0.8732	0.299	0.7589	1.9504	0	558358	726495	283566	314116	0	1882535	0.28	0.41	0.15	0.16	0.31	0.855	0.3458	0.7231	1.8487	0	54	39	93	27792	31177	16409	18368	93746	0.29	0.31	0.18	0.21	0.39	0.8738	0.3046	0.7567	1.9276	0	16419	22132	8123	9375	56049	0.27	0.42	0.15	0.16	0.31	0.8486	0.374	0.7046	1.8385	8	4	12	169	209	222	286	886	0.19	0.23	0.25	0.32	0.58	0.8628	0.3133	0.7418	1.9525	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11564	13680	4571	7641	8279	11500	9905	11473	5545	7483	12782	14957	10076	2246	7372	7255	10591	7413	8335	11861	7332	7361	5900	13642	7935	3976	4596	12606	7500	8919	6564	10678	4349	6541	7412	5906	4273	3214	4676	4915	5704	1731	14473	4728	5540	10373	5152	9542	6633	7104	3206	2221	6946	6845	6293	7577	2031	2060	2365	2646	10298	2828	5108	2727
GCF_011075055.1	NC_058156	NC_058156.1	Mangifera indica cultivar Alphonso chromosome 20; CATAS_Mindica_2.1; whole genome shotgun sequence.	4176270	4150217	1983079	1982196	2500	12294262	0.34	0.34	0.16	0.16	0.32	0.9397	0.0034	0.9967	1.9071	457	534	991	1110680	1299696	637159	721110	500	3769145	0.29	0.33	0.18	0.2	0.38	0.9089	0.1706	0.8482	1.9417	4322	408	474	882	344057	332272	232721	277660	1186710	0.29	0.28	0.19	0.24	0.43	0.8723	0.3032	0.7555	1.951	1	475364	623379	241473	267828	500	1608544	0.28	0.41	0.15	0.16	0.31	0.8558	0.3562	0.7166	1.85	0	32	42	74	22653	23550	13429	15432	75064	0.31	0.3	0.18	0.22	0.39	0.8743	0.3083	0.7532	1.93	77	25430	30657	11939	14403	82429	0.29	0.41	0.14	0.16	0.3	0.8496	0.3423	0.7259	1.8386	4	9	13	204	219	247	303	973	0.21	0.23	0.25	0.31	0.57	0.8874	0.224	0.8059	1.9702	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9997	11479	3838	6632	7841	9963	8753	9899	4761	6706	10780	12545	8399	1850	6322	6783	8852	6758	7298	10114	6562	6269	5311	11173	6673	3906	4093	11022	6322	7643	5887	8972	3819	5553	6338	4967	3732	2838	4103	4299	4789	1473	11816	4344	4704	8744	4633	8060	5354	6479	2584	2019	5931	6005	5488	6453	1935	1743	2039	2240	8984	2500	4652	2396