GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001659605.2	NC_035161	NC_035161.2	Manihot esculenta cultivar AM560-2 chromosome 1; M.esculenta_v8; whole genome shotgun sequence.	13502478	13449522	7966769	7934980	144525	42998274	0.31	0.31	0.19	0.18	0	0.37	0.9265	0.004	0.996	1.9498	1307	1383	2690	3239331	3770716	1941473	2150428	0	11101948	0.28	0.33	0.18	0.2	0.39	0.911	0.1592	0.8573	1.9484	26037	1205	1270	2475	962382	927613	663821	791489	3345305	0.29	0.28	0.19	0.24	0.43	0.8725	0.3022	0.756	1.9519	4	1590147	2006814	858471	932067	0	5387499	0.27	0.4	0.16	0.17	0.32	0.8591	0.3376	0.7298	1.8649	0	47	56	103	37202	43448	24021	25801	130472	0.29	0.32	0.19	0.2	0	0.4	0.875	0.3046	0.7563	1.9299	0	24052	30820	12397	13697	0	80966	0.27	0.41	0.15	0.17	0	0.31	0.8565	0.3584	0.721	1.8448	39	38	77	1111	1372	1419	1758	5660	0.2	0.24	0.25	0.31	0.56	0.8874	0.2254	0.8045	1.9715	1	0	1	935	747	735	891	3308	0.28	0.23	0.22	0.27	0	0.49	0.9248	0.2077	0.8119	1.9919	28895	33065	11254	18349	22878	29105	25978	27453	14909	18782	29397	34609	23109	4963	16475	17758	25715	18563	20898	26984	17693	17879	15074	33828	20044	11170	11737	28785	17995	23126	16388	25813	10910	15899	17660	14120	10427	8052	11144	11994	14768	4498	31276	12226	14135	24778	13419	23364	14471	18522	6655	5104	15117	18641	16833	18722	5118	4946	4762	6161	24684	6075	12028	6504
GCF_001659605.2	NC_035162	NC_035162.2	Manihot esculenta cultivar AM560-2 chromosome 2; M.esculenta_v8; whole genome shotgun sequence.	12099691	12111933	7099953	7170185	86093	38567855	0.31	0.31	0.18	0.19	0	0.37	0.9431	0.0054	0.9946	1.9502	1090	1109	2199	3160481	3599364	1841466	2022075	16300	10639686	0.29	0.33	0.18	0.2	0.38	0.911	0.1576	0.859	1.9458	48104	987	1021	2008	824447	786167	556002	668111	2834727	0.29	0.28	0.19	0.24	0.43	0.8726	0.2973	0.7593	1.9517	35	1495167	1855108	800195	863936	10100	5024506	0.28	0.4	0.15	0.17	0.32	0.8588	0.3328	0.7329	1.8617	0	65	39	104	37462	41941	23527	25036	127966	0.29	0.31	0.19	0.21	0	0.4	0.8752	0.3172	0.7499	1.924	0	53632	60863	27880	30182	0	172557	0.28	0.41	0.15	0.17	0	0.31	0.8544	0.3436	0.73	1.8441	23	23	46	654	800	873	1087	3414	0.19	0.23	0.26	0.32	0.57	0.886	0.2426	0.7914	1.9659	0	3	3	1260	1118	1348	1634	5360	0.24	0.21	0.26	0.29	0	0.55	0.904	0.1349	0.8764	1.9854	24386	28778	9782	15474	19591	24807	21499	23437	11980	16066	25644	30220	19330	4133	13876	14646	21212	15943	17695	23233	14996	14957	12836	28908	16420	9232	10065	24908	15317	19291	13783	21621	8804	13944	15147	11779	8811	6606	9774	10114	12524	3623	27664	10180	11798	20605	11055	19529	12415	15521	5620	4238	13154	15272	14265	16198	4147	3910	4017	5083	21282	5337	10081	5552
GCF_001659605.2	NC_035163	NC_035163.2	Manihot esculenta cultivar AM560-2 chromosome 3; M.esculenta_v8; whole genome shotgun sequence.	10432729	10438232	6067784	6072909	297603	33309257	0.31	0.31	0.18	0.18	0.01	0.36	0.9343	0.0007	0.9993	1.9444	1015	1109	2124	2831669	3295269	1686522	1859374	3100	9675934	0.29	0.33	0.18	0.2	0.38	0.9104	0.164	0.8537	1.9449	3849	943	1012	1955	786994	757196	536142	640695	2721027	0.29	0.28	0.19	0.24	0.43	0.8719	0.2999	0.7576	1.9515	0	1506207	1889075	821225	882874	3100	5102481	0.27	0.4	0.16	0.17	0.32	0.8589	0.3361	0.7305	1.8641	0	37	63	100	26430	30026	15934	16954	89344	0.3	0.32	0.18	0.2	0	0.39	0.8705	0.315	0.7499	1.9198	0	26293	29913	14885	17370	0	88461	0.28	0.42	0.14	0.16	0	0.31	0.8494	0.4102	0.6882	1.8225	21	23	44	667	743	845	1033	3288	0.2	0.23	0.26	0.31	0.57	0.8859	0.2148	0.8121	1.9703	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23588	27108	9249	14952	18685	22742	21022	22775	11529	15656	23631	28216	19044	3898	13374	13810	20724	14946	17327	22325	14482	14902	12251	26788	16201	8929	9511	22987	14750	19021	13424	20554	8728	13468	14852	11205	8398	6525	9314	9647	11924	3470	25916	9796	11425	20328	10749	18934	11902	15194	5184	4028	12560	14811	13479	15416	4368	3776	3864	4780	20459	5476	10350	5267
GCF_001659605.2	NC_035164	NC_035164.2	Manihot esculenta cultivar AM560-2 chromosome 4; M.esculenta_v8; whole genome shotgun sequence.	11307088	11303652	6586641	6578005	162825	35938211	0.31	0.31	0.18	0.18	0	0.37	0.9272	0.0008	0.9992	1.9468	797	852	1649	2367511	2719935	1358783	1496729	7200	7950158	0.29	0.33	0.18	0.2	0.38	0.909	0.1635	0.8543	1.9412	19785	716	782	1498	603274	580173	404719	482713	2070879	0.29	0.28	0.19	0.24	0.43	0.8716	0.3011	0.7572	1.9487	0	1185326	1463193	634133	678565	3100	3964317	0.28	0.41	0.15	0.16	0.32	0.8564	0.3385	0.7291	1.8553	0	55	49	104	29446	32593	18064	20185	100288	0.3	0.31	0.18	0.21	0	0.4	0.8725	0.321	0.7442	1.9257	0	80500	86366	36467	43388	4100	250821	0.28	0.42	0.14	0.16	0	0.31	0.8526	0.3781	0.7063	1.8272	15	14	29	388	537	537	706	2168	0.18	0.25	0.25	0.33	0.57	0.8944	0.3082	0.7402	1.9597	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17979	20640	6811	11387	13981	16811	15553	17309	8592	12111	18416	21397	14684	2868	10297	10484	15745	11280	13088	16875	10851	11006	9077	21001	12509	6651	7284	18564	11636	13957	10490	15633	6478	10456	11607	8471	6246	4631	7238	6758	8975	2556	19888	7101	8686	15380	7909	14573	9276	11522	3739	2834	9773	11574	10157	12234	3509	2802	2756	3701	16060	4143	8173	3888
GCF_001659605.2	NC_035165	NC_035165.2	Manihot esculenta cultivar AM560-2 chromosome 5; M.esculenta_v8; whole genome shotgun sequence.	10634668	10648968	6147973	6176561	73400	33681570	0.32	0.32	0.18	0.18	0	0.37	0.9371	0.003	0.997	1.947	1039	1021	2060	2579889	2970535	1563319	1705947	4100	8823790	0.29	0.33	0.18	0.2	0.39	0.9112	0.1547	0.8613	1.949	6483	932	924	1856	712085	687947	499546	590929	2490507	0.29	0.28	0.2	0.24	0.43	0.8735	0.2997	0.7583	1.9523	37	1265147	1570089	691784	736865	0	4263885	0.27	0.4	0.16	0.17	0.32	0.8586	0.3336	0.7327	1.8648	0	58	58	116	45236	53095	28215	32046	158592	0.29	0.31	0.19	0.21	0	0.4	0.8769	0.293	0.7606	1.9314	0	72055	77526	42823	42122	0	234526	0.27	0.4	0.16	0.17	0	0.33	0.861	0.346	0.7296	1.8587	38	29	67	985	1190	1243	1585	5003	0.2	0.24	0.25	0.32	0.57	0.8846	0.239	0.7943	1.9709	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21046	24358	8512	13594	16900	21315	19571	20099	10968	14155	21126	25359	17149	3824	12020	12618	19275	14149	15931	20191	13459	13425	11674	24859	15031	8153	8630	20705	13268	17317	12331	18750	8390	11970	13412	10779	7925	6362	8461	9246	11040	3498	23162	9149	10313	18317	10000	17561	10450	13515	5350	4151	11225	13816	12579	14355	3694	3782	3790	4778	18072	4730	8947	5052
GCF_001659605.2	NC_035166	NC_035166.2	Manihot esculenta cultivar AM560-2 chromosome 6; M.esculenta_v8; whole genome shotgun sequence.	9653549	9693005	5668045	5726246	78498	30819343	0.31	0.31	0.18	0.19	0	0.37	0.9293	0.0071	0.9929	1.9499	903	889	1792	2337365	2723302	1389472	1536129	0	7986268	0.29	0.33	0.18	0.2	0.38	0.91	0.1618	0.8554	1.9446	13401	813	790	1603	642391	619662	440306	527739	2230098	0.29	0.28	0.19	0.24	0.43	0.872	0.3027	0.7562	1.9504	0	1227624	1535293	668033	720663	0	4151613	0.28	0.41	0.15	0.16	0.32	0.8587	0.3326	0.7327	1.8606	0	60	58	118	34143	38807	21111	23442	117503	0.3	0.31	0.18	0.21	0	0.39	0.8747	0.2891	0.766	1.9304	196	24526	31118	11578	13236	0	80458	0.28	0.42	0.14	0.16	0	0.3	0.8542	0.3719	0.708	1.8261	24	26	50	689	881	931	1185	3686	0.19	0.24	0.25	0.32	0.57	0.888	0.2635	0.7734	1.9663	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	19217	22411	7666	11990	15591	19095	17193	18263	9649	13018	19174	22648	15202	3409	11165	11309	16951	12451	13930	18066	11800	11898	10107	21984	13030	7372	7771	19319	12192	15473	11054	17215	7207	11098	11937	9303	6756	5330	7649	7838	9814	2876	21079	8077	9411	16624	8995	15736	9762	12295	4237	3380	10219	12527	11307	12947	3489	3150	3144	4044	16428	4324	8208	4253
GCF_001659605.2	NC_035167	NC_035167.2	Manihot esculenta cultivar AM560-2 chromosome 7; M.esculenta_v8; whole genome shotgun sequence.	10838526	10824542	6444528	6442260	118198	34668054	0.31	0.31	0.19	0.19	0	0.37	0.9285	0.0008	0.9992	1.9512	880	776	1656	2039379	2285971	1170908	1272764	8200	6777222	0.29	0.31	0.19	0.21	0.4	0.9071	0.1536	0.8627	1.9462	24041	655	652	1307	519566	500725	344206	408483	1772980	0.29	0.28	0.19	0.23	0.42	0.8715	0.2984	0.7594	1.948	4	1032130	1227868	540976	576269	6100	3383343	0.29	0.41	0.15	0.16	0.31	0.853	0.3268	0.7378	1.8426	0	39	49	88	28566	31421	17299	18893	96179	0.3	0.31	0.19	0.21	0	0.4	0.8718	0.3061	0.7544	1.9277	0	73206	78345	38820	37951	0	228322	0.28	0.41	0.15	0.16	0	0.31	0.852	0.3462	0.7263	1.8359	21	41	62	872	1124	1139	1458	4593	0.19	0.24	0.25	0.32	0.57	0.8808	0.294	0.7527	1.9631	162	23	185	5426	4679	5851	6054	22010	0.25	0.21	0.27	0.28	0	0.54	0.9093	0.0954	0.9107	1.9927	14921	17674	5921	9502	12003	15169	12967	15498	7525	9920	16630	19002	12302	2482	8698	9446	13552	9627	11555	15255	9309	9227	7987	17939	9604	5719	6592	16718	9764	12657	8992	14169	5490	9481	10007	7115	5088	3960	5724	5611	7758	2043	18012	6156	6945	12907	6614	12050	7754	9614	3339	2557	9125	9554	7973	10559	2418	2282	2347	2915	13385	3195	5629	3485
GCF_001659605.2	NC_035168	NC_035168.2	Manihot esculenta cultivar AM560-2 chromosome 8; M.esculenta_v8; whole genome shotgun sequence.	12811501	12855346	8005633	7956891	177515	41806886	0.31	0.31	0.19	0.19	0	0.38	0.9315	0.0048	0.9953	1.9582	879	859	1738	2218211	2551188	1326456	1458079	11300	7565234	0.29	0.33	0.18	0.2	0.38	0.9092	0.1665	0.8514	1.9455	5690	801	783	1584	594947	568875	408676	486606	2059104	0.29	0.28	0.19	0.24	0.43	0.8716	0.3049	0.7543	1.9511	0	1112854	1377380	604783	651761	3100	3749878	0.27	0.41	0.15	0.17	0.32	0.8578	0.3378	0.7295	1.8609	0	49	51	100	32724	37125	20445	21956	112250	0.29	0.32	0.19	0.21	0	0.4	0.869	0.3194	0.7453	1.9267	0	67285	74497	43549	44788	0	230119	0.28	0.4	0.15	0.17	0	0.32	0.8599	0.3469	0.7279	1.8447	16	18	34	491	582	629	793	2495	0.2	0.23	0.25	0.32	0.57	0.8878	0.2284	0.8048	1.9686	1	0	1	31	25	34	29	119	0.26	0.21	0.29	0.24	0	0.53	0.9153	0.1865	0.8297	1.9912	17908	20821	6821	11323	14412	18175	16464	16755	9024	11352	18010	21512	14670	2918	10020	10389	15915	11350	12809	16485	10873	11081	9379	20724	12262	6771	7025	17552	10793	14227	10423	15456	6852	9932	11028	8629	6314	4799	6843	7534	9136	2654	19413	7551	8363	15117	8090	14431	8912	11308	4074	3066	9268	11520	10156	12099	3235	3048	2855	3600	15422	4005	7405	3845
GCF_001659605.2	NC_035169	NC_035169.2	Manihot esculenta cultivar AM560-2 chromosome 9; M.esculenta_v8; whole genome shotgun sequence.	11834507	11850600	6994178	7006401	152320	37838006	0.31	0.31	0.18	0.19	0	0.37	0.9306	0.0016	0.9984	1.9498	1032	970	2002	3045030	3479013	1758216	1924736	23700	10230695	0.29	0.33	0.18	0.2	0.38	0.9099	0.1629	0.8544	1.9436	140635	930	862	1792	727066	701698	482305	584414	2495483	0.29	0.28	0.19	0.24	0.43	0.8719	0.3011	0.7567	1.9506	0	1502291	1824115	805507	862861	15000	5009774	0.28	0.4	0.15	0.17	0.32	0.8586	0.3334	0.7325	1.861	15637	61	55	116	34824	39355	21939	23508	119626	0.29	0.32	0.19	0.21	0	0.4	0.8754	0.3128	0.7519	1.9234	0	51535	59438	28849	31540	0	171362	0.28	0.4	0.16	0.17	0	0.33	0.8611	0.3305	0.739	1.8613	20	20	40	568	691	732	915	2906	0.2	0.24	0.25	0.32	0.57	0.8918	0.2377	0.7956	1.9687	8	21	29	868	811	864	911	3454	0.25	0.23	0.25	0.26	0	0.51	0.9072	0.0937	0.9126	1.9958	22238	25141	8669	13696	17351	21033	19473	21947	10306	13665	23090	26346	17006	3481	12272	12276	19137	14067	15410	20856	12574	13550	10679	26190	14133	8299	8656	21768	13767	16948	12250	19476	7814	12551	13337	9906	7484	5435	8254	8483	10977	3142	24715	8724	10467	19000	9792	17019	11261	13751	4432	3571	12064	13826	12446	13648	3584	3293	3179	4360	19204	4600	8650	4571
GCF_001659605.2	NC_035170	NC_035170.2	Manihot esculenta cultivar AM560-2 chromosome 10; M.esculenta_v8; whole genome shotgun sequence.	10077471	10022894	5950444	5948517	70725	32070051	0.31	0.31	0.19	0.19	0	0.37	0.9314	0.0029	0.9971	1.951	759	763	1522	2278858	2551308	1318225	1432372	15325	7596088	0.29	0.33	0.18	0.2	0.38	0.9079	0.1669	0.852	1.9411	113161	675	686	1361	596133	583251	393657	469382	2042423	0.29	0.28	0.19	0.23	0.43	0.8717	0.2975	0.7593	1.9495	0	1118577	1329962	591562	627046	15325	3682472	0.28	0.4	0.15	0.16	0.31	0.857	0.3304	0.735	1.855	0	45	43	88	30980	34986	18133	19410	103509	0.29	0.32	0.19	0.2	0	0.39	0.8712	0.3196	0.7436	1.9198	0	41873	46206	24131	25354	0	137564	0.28	0.41	0.15	0.16	0	0.31	0.8567	0.3384	0.7339	1.8395	27	26	53	738	965	944	1259	3906	0.19	0.25	0.24	0.32	0.57	0.8822	0.3269	0.7301	1.9586	1	0	1	40	34	42	40	156	0.26	0.22	0.27	0.26	0	0.53	0.8617	0.1055	0.9012	1.9956	17102	19979	6579	10961	13307	17173	14809	17978	8547	11601	19769	21833	14475	2701	10209	10747	16300	10801	13022	17613	10357	11163	9309	21104	11208	6254	7517	19334	11466	14661	10238	16994	6118	10389	10853	8016	5970	4399	6407	6346	8707	2409	20557	6818	8244	15013	7638	13999	9308	11334	3567	2600	11004	11233	9375	11985	2848	2599	2689	3643	15457	3670	6987	3754
GCF_001659605.2	NC_035171	NC_035171.2	Manihot esculenta cultivar AM560-2 chromosome 11; M.esculenta_v8; whole genome shotgun sequence.	10544085	10486198	5972751	5945226	150121	33098381	0.32	0.32	0.18	0.18	0	0.36	0.9319	0.0051	0.995	1.9418	930	851	1781	2504513	2846841	1413216	1550369	2100	8317039	0.29	0.33	0.18	0.2	0.38	0.9084	0.1611	0.8566	1.9398	6071	847	743	1590	633215	610076	424201	502982	2170474	0.29	0.28	0.19	0.23	0.42	0.8707	0.2982	0.7593	1.948	8	1282566	1555315	664107	712731	2100	4216819	0.28	0.41	0.15	0.16	0.31	0.8545	0.3274	0.7372	1.8492	0	48	83	131	38984	44316	24015	25811	133126	0.29	0.32	0.18	0.21	0	0.39	0.8738	0.307	0.7548	1.925	0	44446	52359	23951	25725	0	146481	0.28	0.42	0.14	0.16	0	0.3	0.8477	0.3866	0.7033	1.8217	21	15	36	538	656	660	836	2690	0.2	0.24	0.25	0.31	0.56	0.8953	0.2443	0.7887	1.9726	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18996	21818	7201	11876	14667	17522	16100	18820	9198	12536	19404	22020	15142	3139	10416	11126	16273	12087	14358	17830	11274	11532	9777	21419	12701	7088	7978	19129	12240	14746	11211	15999	6948	11277	12183	8676	6788	4802	7657	7178	9297	2743	20839	7204	8958	15855	8114	15259	9713	12300	4182	3085	10622	11514	10327	12561	3811	2896	2995	3904	16585	4598	8518	4115
GCF_001659605.2	NC_035172	NC_035172.2	Manihot esculenta cultivar AM560-2 chromosome 12; M.esculenta_v8; whole genome shotgun sequence.	11498356	11526953	6974700	7006957	129945	37136911	0.31	0.31	0.19	0.19	0	0.38	0.9339	0.0035	0.9965	1.9547	845	814	1659	2141057	2448784	1274887	1397327	20600	7282655	0.29	0.33	0.18	0.2	0.38	0.9093	0.1608	0.8563	1.9451	23854	762	748	1510	575934	548874	393327	468273	1986408	0.29	0.28	0.19	0.24	0.43	0.8723	0.3038	0.7558	1.95	0	1073263	1321204	579911	618352	9200	3601930	0.28	0.41	0.15	0.16	0.32	0.8568	0.3344	0.7323	1.8569	0	59	37	96	21514	22925	12993	14750	72182	0.3	0.31	0.18	0.22	0	0.4	0.8649	0.3339	0.7326	1.9276	0	31583	39140	15701	20238	0	106662	0.28	0.41	0.14	0.16	0	0.31	0.8492	0.3744	0.711	1.8304	17	18	35	538	615	662	843	2658	0.2	0.23	0.25	0.32	0.57	0.8558	0.3129	0.743	1.9518	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17175	19982	6537	10868	13944	16784	15238	16009	8670	11790	17488	20851	13643	2983	9571	10296	15074	10767	12650	16119	10508	10597	9049	19638	11937	6722	6940	16825	10789	13675	10002	14877	6486	9562	10811	8415	6244	4635	6801	7135	8967	2670	18892	7101	8301	14395	7698	14252	8638	11094	3860	3000	9215	10632	9964	11127	3037	2909	2877	3483	14889	3905	7312	3852
GCF_001659605.2	NC_035173	NC_035173.2	Manihot esculenta cultivar AM560-2 chromosome 13; M.esculenta_v8; whole genome shotgun sequence.	11375056	11390386	7010533	7002515	174196	36952686	0.31	0.31	0.19	0.19	0	0.38	0.9326	0.0012	0.9988	1.9563	842	811	1653	2110513	2405100	1247047	1367678	3100	7133438	0.29	0.33	0.18	0.2	0.38	0.9088	0.1676	0.851	1.9451	3216	765	728	1493	562147	533468	382592	457143	1935350	0.29	0.28	0.19	0.24	0.43	0.8715	0.3065	0.754	1.949	520	1094606	1336768	594278	635087	0	3660739	0.28	0.4	0.15	0.17	0.32	0.8585	0.3362	0.7311	1.8624	0	47	60	107	27779	31164	16077	17978	92998	0.29	0.32	0.18	0.21	0	0.39	0.873	0.3159	0.7504	1.9189	87	44032	50110	23195	24139	0	141476	0.27	0.41	0.15	0.17	0	0.32	0.8589	0.3429	0.7308	1.8573	23	15	38	530	674	722	928	2854	0.18	0.24	0.26	0.33	0.58	0.8638	0.3327	0.7273	1.9464	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16593	19876	6331	10673	13408	16925	15226	15711	8289	10835	17102	20533	13196	2890	9507	9864	14937	10620	12131	15739	9945	10628	8657	19631	11704	6343	6839	16515	10347	13320	9359	14735	5955	9188	10378	8206	6266	4523	6431	7225	8692	2653	18835	6986	7890	14100	7555	13809	8325	10600	3749	2981	8930	10525	9753	11186	2864	2615	2716	3438	14602	3460	6710	3667
GCF_001659605.2	NC_035174	NC_035174.2	Manihot esculenta cultivar AM560-2 chromosome 14; M.esculenta_v8; whole genome shotgun sequence.	9194484	9237847	5404740	5376518	94797	29308386	0.31	0.32	0.18	0.18	0	0.37	0.9394	0.005	0.995	1.9483	882	877	1759	2217284	2559144	1322799	1446095	2100	7547422	0.29	0.33	0.18	0.2	0.38	0.91	0.1571	0.8594	1.9464	9223	796	804	1600	615613	591827	423084	503601	2134125	0.29	0.28	0.19	0.24	0.43	0.8723	0.3084	0.7522	1.9489	0	1148171	1418613	623140	664408	0	3854332	0.27	0.4	0.15	0.17	0.32	0.8584	0.3362	0.731	1.861	0	56	49	105	32407	36184	19808	22089	110488	0.3	0.31	0.18	0.21	0	0.39	0.876	0.3029	0.7562	1.9259	0	15345	19610	8449	8923	0	52327	0.27	0.42	0.15	0.17	0	0.32	0.8524	0.4143	0.6851	1.8317	24	20	44	623	790	805	1055	3273	0.19	0.24	0.25	0.32	0.57	0.8896	0.2619	0.7729	1.9683	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18487	21329	7153	11648	14705	18054	16672	17583	9556	12194	18675	21467	14591	3241	10425	10782	16217	11982	13345	17328	11252	11456	9712	21455	12454	6990	7363	18409	11526	14812	10856	16197	6777	10414	11472	8931	6613	5264	7492	7502	9322	2850	20338	7598	8915	15433	8701	15106	9057	11746	3971	3383	9850	11924	10986	12479	3464	2926	3085	3903	15765	4102	7774	4104
GCF_001659605.2	NC_035175	NC_035175.2	Manihot esculenta cultivar AM560-2 chromosome 15; M.esculenta_v8; whole genome shotgun sequence.	10265840	10265708	6162173	6170546	58919	32923186	0.31	0.31	0.19	0.19	0	0.37	0.9417	0.0007	0.9993	1.9537	997	923	1920	2361575	2751749	1415757	1569293	0	8098374	0.29	0.33	0.18	0.2	0.38	0.91	0.1633	0.8544	1.9456	6598	907	840	1747	670075	644335	461419	553112	2328941	0.29	0.28	0.19	0.24	0.43	0.872	0.3037	0.7552	1.9515	0	1195807	1509230	648745	703616	0	4057398	0.27	0.4	0.15	0.17	0.32	0.8593	0.3365	0.7304	1.8635	0	54	52	106	26998	30535	16241	18504	92278	0.3	0.31	0.18	0.21	0	0.39	0.8692	0.3128	0.7489	1.9272	0	19719	23869	10880	11504	0	65972	0.27	0.41	0.15	0.17	0	0.32	0.8542	0.3768	0.7061	1.8504	22	24	46	648	783	868	1084	3383	0.19	0.23	0.26	0.32	0.58	0.8808	0.2676	0.7744	1.9623	0	1	1	779	630	897	1089	3395	0.23	0.19	0.26	0.32	0	0.58	0.9155	0.2024	0.8162	1.9718	20113	23431	7693	12847	16269	19817	18597	18996	9908	13239	20036	23694	15982	3390	11605	12020	17887	13058	14522	18971	12328	13266	10566	23608	14151	7752	7976	19526	12707	16280	11339	17418	7542	11049	12631	9733	7189	5675	8088	8437	10269	3093	21987	8534	9737	17067	9502	16305	10079	12906	4311	3443	10531	13110	11998	13321	3420	3318	3302	4168	17044	4132	8614	4299
GCF_001659605.2	NC_035176	NC_035176.2	Manihot esculenta cultivar AM560-2 chromosome 16; M.esculenta_v8; whole genome shotgun sequence.	10601066	10580602	6473243	6477039	39125	34171075	0.31	0.31	0.19	0.19	0	0.38	0.927	0.0013	0.9987	1.957	698	732	1430	1920615	2192138	1133471	1240892	2100	6489216	0.29	0.33	0.18	0.2	0.38	0.9096	0.1591	0.8581	1.945	2711	618	678	1296	526554	503821	356910	426249	1813534	0.29	0.28	0.19	0.24	0.43	0.8718	0.3001	0.7576	1.95	1	1050926	1278315	572495	606309	2100	3510145	0.28	0.4	0.16	0.16	0.32	0.8577	0.3347	0.7316	1.8615	0	48	27	75	24028	25977	13610	14693	78308	0.3	0.31	0.19	0.2	0	0.39	0.8773	0.3038	0.7583	1.9232	0	15203	18809	8548	8795	0	51355	0.28	0.41	0.15	0.17	0	0.32	0.8533	0.3572	0.7184	1.846	26	20	46	676	831	872	1105	3484	0.19	0.24	0.25	0.32	0.57	0.8768	0.2482	0.7862	1.9703	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15513	17896	6068	10006	12477	15224	14089	15018	7689	10540	15815	19047	12547	2623	8772	9163	13950	10025	11314	14758	9400	9286	8231	18014	10712	5703	6348	15580	9921	12784	8880	13594	6041	9004	9928	7720	5411	4204	6182	6311	7868	2313	17653	6563	7580	13458	6995	13067	8048	9873	3622	2578	8590	10007	8934	10580	2904	2551	2632	3249	13938	3514	6787	3503
GCF_001659605.2	NC_035177	NC_035177.2	Manihot esculenta cultivar AM560-2 chromosome 17; M.esculenta_v8; whole genome shotgun sequence.	10665035	10644602	6855223	6861241	130792	35156893	0.3	0.3	0.19	0.2	0	0.39	0.9232	0.0014	0.9986	1.9639	686	642	1328	1725821	1983372	1008301	1114343	10300	5842137	0.29	0.33	0.18	0.2	0.38	0.909	0.1609	0.8563	1.9443	1881	618	581	1199	462100	444339	316470	374711	1597620	0.29	0.28	0.19	0.24	0.43	0.8722	0.2998	0.7578	1.9505	0	902118	1111932	481963	524021	0	3020034	0.28	0.4	0.15	0.16	0.32	0.8576	0.3303	0.7351	1.8606	0	38	44	82	24362	27754	15774	16684	84574	0.29	0.31	0.19	0.21	0	0.4	0.8703	0.2952	0.7645	1.9262	0	46878	53544	26155	27188	10300	164065	0.28	0.39	0.16	0.17	0	0.32	0.8642	0.2766	0.7735	1.8653	20	15	35	521	612	652	817	2602	0.2	0.24	0.25	0.31	0.57	0.8766	0.2464	0.7875	1.9679	1	0	1	40	43	33	40	156	0.26	0.28	0.21	0.26	0	0.47	0.8987	0.132	0.8776	1.9934	13567	15611	5456	8725	10978	13426	11934	13254	6957	9425	14021	16725	11101	2329	7836	8024	12122	9042	10186	13363	8098	8247	7300	15572	9508	5373	5749	13334	8763	11302	8099	12204	5210	7939	8643	6713	5178	3770	5635	5471	7335	2056	15116	5708	6960	11492	6286	11154	7096	9099	3058	2383	7343	8864	7840	9080	2461	2246	2217	2804	11925	3078	5912	3173
GCF_001659605.2	NC_035178	NC_035178.2	Manihot esculenta cultivar AM560-2 chromosome 18; M.esculenta_v8; whole genome shotgun sequence.	10261441	10275757	6383847	6379787	176275	33477107	0.31	0.31	0.19	0.19	0.01	0.38	0.9382	0.001	0.999	1.9576	720	722	1442	1838521	2108364	1104956	1216368	0	6268209	0.29	0.33	0.18	0.2	0.39	0.911	0.1605	0.857	1.9466	9057	638	648	1286	513196	495125	354683	418939	1781943	0.29	0.28	0.19	0.24	0.43	0.8734	0.298	0.7593	1.9517	0	914451	1129825	497350	533088	0	3074714	0.28	0.4	0.16	0.17	0.32	0.8586	0.3366	0.7307	1.8627	0	59	44	103	31301	36042	18481	21235	107059	0.3	0.31	0.17	0.22	0	0.39	0.8666	0.3513	0.7252	1.9135	0	40756	46773	23981	25740	0	137250	0.28	0.41	0.14	0.17	0	0.31	0.8523	0.3663	0.7148	1.8382	11	21	32	445	532	604	757	2338	0.19	0.23	0.26	0.33	0.58	0.8818	0.2412	0.7956	1.9617	0	3	3	1261	1118	1348	1633	5360	0.24	0.21	0.26	0.29	0	0.55	0.9041	0.1349	0.8763	1.9855	15276	17593	6023	9762	11919	15062	13370	14990	8020	10106	15752	18009	12242	2806	8888	9369	13878	10103	11271	14453	9043	9704	8032	17830	10405	6029	6152	15190	9600	12477	8926	13317	5858	8568	9532	7414	5434	4339	6151	6494	7944	2454	16914	6352	7734	12965	7121	12184	7701	9993	3607	2792	8409	9905	8679	10341	2739	2534	2650	3354	13482	3334	6128	3513
NA	NC_045136	NC_045136.1	Manihot esculenta mitochondrion; complete genome.	189073	190110	151960	151697	0	682840	0.28	0.28	0.22	0.22	0	0.44	0.9522	0.0036	0.9964	1.9912	33	19	52	14421	14845	12587	13767	0	55620	0.25	0.29	0.22	0.25	0.46	0.9037	0.1995	0.827	1.974	73	20	8	28	5869	6913	4734	4837	22353	0.27	0.32	0.2	0.21	0.41	0.8985	0.2154	0.8142	1.9614	73	2701	2423	2535	2840	0	10499	0.25	0.23	0.24	0.28	0.52	0.9244	0.089	0.7495	1.9952	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	9	8	17	288	338	293	360	1279	0.22	0.26	0.23	0.28	0.51	0.8916	0.1945	0.8317	1.9822	1	2	3	1341	1118	1146	1495	5100	0.27	0.22	0.24	0.28	0	0.52	0.9197	0.2026	0.8191	1.9896	191	122	128	112	99	97	165	254	105	127	164	217	128	56	120	78	155	93	211	281	71	151	89	164	65	94	132	162	186	167	162	168	85	137	96	78	55	79	60	97	79	60	177	66	49	138	89	113	80	151	99	65	186	138	73	123	28	68	59	86	154	23	26	114
NA	NC_010433	NC_010433.1	Manihot esculenta chloroplast; complete genome.	51103	52432	29439	28479	0	161453	0.32	0.32	0.18	0.18	0	0.36	0.9328	0.0294	0.971	1.9415	53	78	131	32896	32589	18893	22341	0	106719	0.29	0.3	0.19	0.23	0.42	0.8938	0.2213	0.8086	1.9463	21	29	53	82	22281	22746	12319	14390	71736	0.31	0.32	0.17	0.21	0.38	0.887	0.2615	0.7838	1.9242	21	2403	2276	1099	1363	0	7141	0.34	0.32	0.16	0.19	0.35	0.9011	0.154	0.7625	1.9234	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	20	38	614	703	670	827	2814	0.22	0.25	0.24	0.3	0.53	0.8789	0.2392	0.8015	1.9659	4	3	7	1593	1182	1479	1998	6252	0.26	0.21	0.22	0.31	0	0.53	0.909	0.2823	0.7553	1.979	559	303	483	500	361	282	591	1063	271	412	898	977	357	119	392	263	519	187	453	930	162	546	152	776	172	214	337	475	727	652	396	499	148	693	376	188	127	162	159	217	114	109	999	177	73	455	278	428	212	437	150	147	836	394	134	268	22	111	127	307	644	50	25	314