GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000147395.1	NC_068326	NC_068326.1	Oryza glaberrima chromosome 1; OglaRS2; whole genome shotgun sequence.	11297214	11286215	8540225	8533121	100	39656875	0.28	0.28	0.22	0.22	0.43	0.9556	0.0009	0.9991	1.986	2055	1985	4040	3932621	4471072	3350524	3436154	0	15190371	0.24	0.27	0.24	0.25	0.49	0.9125	0.1245	0.8868	1.9726	3843	1885	1819	3704	1158299	1089381	1337668	1423189	0	5008537	0.25	0.24	0.24	0.27	0.51	0.8666	0.2857	0.7675	1.936	0	1802623	2253421	1191267	1206406	6453717	0.26	0.37	0.19	0.18	0.37	0.8684	0.3055	0.7527	1.9045	99	112	211	73061	83394	63437	63217	283109	0.25	0.27	0.24	0.24	0	0.48	0.8714	0.2812	0.7706	1.9404	0	88639	103368	59723	58923	0	310653	0.26	0.37	0.19	0.18	0	0.37	0.8735	0.2948	0.7624	1.9087	46	34	80	1168	1373	1516	1888	5945	0.2	0.23	0.26	0.32	0.57	0.8823	0.2318	0.8011	1.9635	1	0	1	31	27	29	32	119	0.26	0.23	0.24	0.27	0	0.51	0.9099	0.1181	0.8886	1.997	39537	46395	11354	17488	28597	53367	29570	21839	30544	27874	22508	31395	24458	19926	15728	27096	22194	38495	36931	20301	37816	21064	43093	33441	34174	24881	13234	25934	15306	26643	30209	24217	30968	14917	21730	39996	23659	20226	23545	48806	28419	28204	24950	46286	26692	22987	26483	23063	14907	20865	23624	43930	10855	21250	27998	24031	5351	23467	31290	11922	25161	5872	15272	12205
GCF_000147395.1	NC_068327	NC_068327.1	Oryza glaberrima chromosome 2; OglaRS2; whole genome shotgun sequence.	9851898	9851739	7373709	7374160	200	34451706	0.29	0.29	0.21	0.21	0.43	0.9545	0	1	1.985	1685	1645	3330	3360771	3835354	2811282	2887363	100	12894870	0.25	0.28	0.24	0.24	0.48	0.9126	0.1283	0.8837	1.9731	9778	1511	1465	2976	978358	909148	1077856	1160977	0	4126339	0.26	0.24	0.23	0.27	0.5	0.867	0.2922	0.7631	1.9355	0	1489800	1882528	990272	995883	5358483	0.26	0.37	0.18	0.18	0.36	0.8676	0.3114	0.7485	1.9015	134	131	265	85919	98203	74663	73325	332110	0.25	0.27	0.24	0.24	0	0.47	0.8733	0.2817	0.7695	1.9404	0	102315	122055	70259	70845	100	365574	0.26	0.36	0.19	0.18	0	0.37	0.874	0.2965	0.7603	1.9102	25	39	64	955	1128	1202	1495	4780	0.2	0.24	0.25	0.31	0.57	0.8871	0.2387	0.795	1.9683	1	0	1	30	26	27	36	119	0.25	0.22	0.23	0.3	0	0.53	0.8929	0.2143	0.8083	1.9879	32959	39097	9476	14845	24242	45309	25720	19168	24127	22399	19810	28196	20752	14710	13335	22159	19173	30301	28424	17646	30344	17989	34883	29197	28448	19313	11298	22319	13287	22715	24590	21209	24009	12741	18114	32033	19193	15967	18305	38867	22927	22603	21962	35785	21169	19691	21298	19495	12373	18081	18144	34502	9542	17662	22922	19799	4535	18059	23648	9683	22315	5117	13164	10058
GCF_000147395.1	NC_068328	NC_068328.1	Oryza glaberrima chromosome 3; OglaRS2; whole genome shotgun sequence.	10069904	10099695	7686793	7670312	100	35526804	0.28	0.28	0.22	0.22	0.43	0.9576	0.0026	0.9975	1.9867	1842	1773	3615	3474761	3985529	2960669	3053641	0	13474600	0.24	0.28	0.24	0.24	0.48	0.9125	0.1269	0.8847	1.9737	6575	1696	1596	3292	1029754	950908	1168583	1263070	0	4412315	0.26	0.23	0.24	0.27	0.51	0.8655	0.2894	0.7653	1.934	0	1623702	2065372	1085875	1100397	5875346	0.26	0.37	0.19	0.18	0.37	0.8682	0.314	0.747	1.9038	99	124	223	58986	66421	52760	51537	229704	0.25	0.27	0.24	0.24	0	0.48	0.8736	0.2598	0.7842	1.9457	0	59302	70175	40823	40032	0	210332	0.26	0.36	0.19	0.18	0	0.37	0.8733	0.2973	0.7607	1.9106	33	38	71	1070	1225	1336	1645	5276	0.2	0.23	0.25	0.31	0.57	0.8845	0.2335	0.7999	1.9676	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	35124	42956	9760	15134	25238	49131	26577	19417	26613	23925	20264	28500	21239	17180	13877	23684	19350	33752	31941	17522	33425	19006	37910	30267	31117	21444	10825	22029	13332	23290	26914	21044	26606	12729	18851	35986	20393	17528	19771	43485	25287	25013	22570	40505	22761	20768	23442	20863	12900	17894	20539	39526	9158	17975	25092	20614	4690	20055	27086	10034	22228	5244	14374	10496
GCF_000147395.1	NC_068329	NC_068329.1	Oryza glaberrima chromosome 4; OglaRS2; whole genome shotgun sequence.	8978287	8956770	6814833	6822944	0	31572834	0.28	0.28	0.22	0.22	0.43	0.9519	0.0018	0.9982	1.9866	1293	1375	2668	2699017	3018965	2250494	2313087	0	10281563	0.25	0.27	0.24	0.24	0.48	0.9129	0.1226	0.8884	1.9732	5252	1150	1248	2398	774492	726634	872227	935475	0	3308828	0.26	0.24	0.24	0.27	0.51	0.8678	0.2824	0.7702	1.9365	0	1221312	1480478	800264	809389	4311443	0.27	0.37	0.18	0.18	0.37	0.8685	0.2994	0.7574	1.9048	106	93	199	66673	75933	57360	56971	256937	0.26	0.27	0.24	0.24	0	0.47	0.8756	0.2627	0.782	1.9506	0	73663	85321	48612	47758	0	255354	0.27	0.36	0.19	0.18	0	0.37	0.8741	0.2906	0.7638	1.9093	23	25	48	713	825	890	1137	3565	0.2	0.23	0.25	0.32	0.57	0.8829	0.2411	0.7935	1.9659	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26386	30889	7753	12018	19531	34659	19957	14636	19508	18793	15138	21247	16334	13212	10622	18230	14962	25210	23930	13473	25394	14113	28216	22479	22599	16203	8983	17528	10469	17717	20253	16193	20065	10271	14693	25861	15353	12530	15085	30911	18935	17583	16973	29846	18054	15420	17036	15212	10081	13900	15570	28018	7286	13871	18361	15660	3815	15056	19828	7908	17090	3999	10582	8235
GCF_000147395.1	NC_068330	NC_068330.1	Oryza glaberrima chromosome 5; OglaRS2; whole genome shotgun sequence.	7500069	7523317	5622975	5627584	100	26274045	0.29	0.29	0.21	0.21	0.43	0.9539	0.002	0.998	1.9851	1199	1190	2389	2242410	2552670	1887526	1948359	0	8630965	0.24	0.28	0.24	0.24	0.48	0.9114	0.1308	0.8814	1.9719	1958	1081	1051	2132	655014	604105	750797	806343	0	2816259	0.26	0.24	0.24	0.27	0.51	0.8655	0.2913	0.7637	1.9347	0	1031453	1287194	671703	684269	3674619	0.26	0.37	0.18	0.18	0.36	0.8668	0.3119	0.7485	1.8998	83	109	192	56358	64432	51161	49091	221042	0.26	0.27	0.23	0.24	0	0.47	0.8754	0.274	0.7756	1.9444	0	55953	68981	37738	37919	0	200591	0.26	0.38	0.18	0.18	0	0.36	0.8697	0.3049	0.756	1.8954	27	25	52	713	897	996	1246	3852	0.18	0.23	0.26	0.32	0.58	0.8845	0.2621	0.7776	1.9585	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22309	27078	6165	9620	15869	31748	16683	12081	16850	15050	12608	18144	13123	11027	8796	15161	12039	21441	20319	11200	20801	12031	24697	19130	19168	13722	7058	13814	8596	14965	17047	13369	17722	8193	11829	23015	13348	11149	12990	27882	16022	16226	14404	26480	14523	13101	14900	12805	8050	11820	13220	25665	5884	11753	15993	13593	2938	13057	17731	6386	14517	3387	8831	6809
GCF_000147395.1	NC_068331	NC_068331.1	Oryza glaberrima chromosome 6; OglaRS2; whole genome shotgun sequence.	8369971	8347302	6279388	6278447	100	29275208	0.29	0.29	0.21	0.21	0.43	0.9535	0.0014	0.9986	1.9854	1146	1227	2373	2350987	2655650	1981906	2032933	0	9021476	0.24	0.27	0.24	0.24	0.48	0.9106	0.1271	0.8848	1.9714	809	1027	1099	2126	669866	632095	781886	826449	0	2910296	0.25	0.24	0.24	0.27	0.51	0.8662	0.2837	0.7692	1.9353	0	1091068	1340301	716432	728359	3876160	0.27	0.37	0.18	0.18	0.36	0.867	0.3096	0.7501	1.9005	95	96	191	54681	60726	49204	48882	213493	0.25	0.27	0.24	0.24	0	0.48	0.8742	0.2843	0.7686	1.9406	0	65069	76308	42558	42554	0	226489	0.26	0.37	0.19	0.18	0	0.37	0.8756	0.3121	0.7505	1.9097	11	21	32	451	566	601	766	2384	0.19	0.24	0.25	0.32	0.57	0.8792	0.2545	0.7835	1.9631	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23367	27209	6238	10039	16068	31250	17021	12642	17772	15920	13392	17913	13994	11755	8924	16281	13050	22773	21167	11619	21589	12309	26939	19798	19617	14417	7509	14600	8906	15171	18139	14084	18362	8447	12310	23699	13707	11586	13551	29117	16445	16533	14319	27256	15318	13190	15104	12542	8703	12366	13726	26720	6172	11886	15770	13897	2931	13425	18348	6669	14439	3448	9001	6841
GCF_000147395.1	NC_068332	NC_068332.1	Oryza glaberrima chromosome 7; OglaRS2; whole genome shotgun sequence.	7598077	7612433	5683559	5705445	100	26599614	0.29	0.29	0.21	0.21	0.43	0.9539	0.0029	0.9971	1.9851	1196	1114	2310	2178636	2483573	1834229	1890118	0	8386556	0.24	0.27	0.24	0.24	0.48	0.9104	0.1285	0.8839	1.9719	5081	1081	980	2061	645777	605010	735407	786014	0	2772208	0.26	0.24	0.24	0.27	0.51	0.8661	0.2886	0.7661	1.9343	0	970988	1224920	641092	652565	3489565	0.26	0.37	0.18	0.18	0.36	0.8666	0.3103	0.7495	1.8991	77	106	183	50456	55908	44528	44283	195175	0.26	0.27	0.23	0.24	0	0.47	0.8732	0.2807	0.771	1.9405	320	62367	72293	41653	41393	0	217706	0.27	0.37	0.19	0.17	0	0.36	0.8713	0.2864	0.7693	1.9025	23	16	39	572	700	735	917	2924	0.19	0.24	0.25	0.31	0.57	0.8772	0.2668	0.7768	1.9631	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22001	26132	6105	9376	15338	29629	16231	12354	16031	15363	13078	17965	13116	10456	8638	15246	11995	21185	20316	11372	20704	12082	24535	19634	18661	13387	7196	14220	8956	14845	16958	13609	17301	8309	11753	22494	13008	10845	12930	27357	15661	15736	14226	25380	14707	13043	14343	12743	8268	11801	12615	24072	5853	11686	15488	13440	3019	12239	17441	6432	13854	3340	8552	6789
GCF_000147395.1	NC_068333	NC_068333.1	Oryza glaberrima chromosome 8; OglaRS2; whole genome shotgun sequence.	7298848	7312198	5426593	5435008	100	25472747	0.29	0.29	0.21	0.21	0.43	0.9529	0.0017	0.9983	1.9843	1065	932	1997	1921512	2171267	1596107	1643800	0	7332686	0.25	0.28	0.24	0.24	0.48	0.9111	0.1272	0.8845	1.9718	271	941	844	1785	551967	512041	622950	665240	0	2352198	0.26	0.23	0.24	0.27	0.51	0.8664	0.2883	0.7662	1.9356	47	879225	1086532	573045	584041	3122843	0.27	0.37	0.18	0.18	0.36	0.8673	0.3033	0.7547	1.8998	86	71	157	56960	62451	48418	47754	215583	0.26	0.27	0.23	0.24	0	0.47	0.8748	0.2606	0.7856	1.9437	0	53791	64328	35181	35283	0	188583	0.27	0.37	0.18	0.18	0	0.36	0.8708	0.2933	0.7627	1.9027	30	10	40	557	686	752	954	2949	0.19	0.23	0.25	0.33	0.58	0.8879	0.2555	0.7813	1.9634	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	19180	22740	5321	8170	13417	25625	13960	10372	13956	12917	10862	15107	11553	8425	7226	13101	10407	17566	16826	9422	17263	10239	20841	16573	16039	11538	6231	12320	7398	12761	14587	11422	14614	6999	10014	19198	11384	9062	10798	23461	13111	13076	12114	21591	12112	10965	11899	10718	6906	10113	10489	20276	5118	9823	13048	10980	2737	10389	13940	5339	12431	2808	7403	5579
GCF_000147395.1	NC_068334	NC_068334.1	Oryza glaberrima chromosome 9; OglaRS2; whole genome shotgun sequence.	6218576	6224531	4683713	4669291	100	21796211	0.29	0.29	0.21	0.21	0.43	0.9534	0.002	0.998	1.9854	855	855	1710	1742499	1947193	1452847	1484649	0	6627188	0.24	0.27	0.24	0.24	0.48	0.9108	0.1262	0.8856	1.9718	11034	746	774	1520	468119	436143	539476	572847	0	2016585	0.25	0.24	0.24	0.27	0.51	0.8672	0.2841	0.769	1.9354	0	785824	952289	516180	518684	2772977	0.27	0.37	0.18	0.18	0.36	0.8676	0.3054	0.753	1.9002	64	57	121	48718	53558	41247	41442	184965	0.25	0.27	0.23	0.24	0	0.48	0.8742	0.2542	0.7906	1.9417	0	60473	70031	40155	39510	0	210169	0.26	0.36	0.19	0.18	0	0.37	0.8757	0.2921	0.7641	1.9096	23	15	38	538	668	700	899	2805	0.19	0.24	0.25	0.32	0.57	0.8867	0.26	0.7784	1.9641	6	0	6	2484	2154	2785	3281	10704	0.23	0.2	0.26	0.3	0	0.56	0.9082	0.1269	0.8835	1.9804	16265	19535	4436	7015	11370	21904	11831	8516	12154	11410	9000	12472	9659	7892	6038	11189	8563	15308	14545	8027	15242	8453	17973	13280	13572	10074	5423	10539	6226	10694	12344	9772	12447	5948	8541	16732	9993	8083	9521	20454	11599	11168	9949	18730	10720	9229	10263	9108	6043	8438	9179	17783	4301	8136	11138	9424	2269	9256	12485	4760	10224	2527	6228	4871
GCF_000147395.1	NC_068335	NC_068335.1	Oryza glaberrima chromosome 10; OglaRS2; whole genome shotgun sequence.	6392312	6394743	4822245	4808684	200	22418184	0.29	0.29	0.22	0.21	0.43	0.9528	0.0016	0.9984	1.9856	864	813	1677	1707141	1899474	1416261	1453108	0	6475984	0.25	0.27	0.24	0.24	0.48	0.9107	0.1252	0.8867	1.9714	4804	737	733	1470	467723	439682	540897	576791	0	2025093	0.25	0.24	0.24	0.27	0.51	0.8675	0.2783	0.7728	1.9355	0	783527	934573	514113	516725	2748938	0.27	0.37	0.18	0.18	0.36	0.867	0.3026	0.7555	1.8997	104	58	162	61492	67608	50862	50819	230781	0.26	0.27	0.23	0.24	0	0.47	0.8766	0.2597	0.7839	1.95	0	49075	60356	32660	33371	0	175462	0.26	0.37	0.18	0.18	0	0.36	0.8732	0.2896	0.7628	1.909	10	14	24	338	407	454	571	1770	0.19	0.23	0.26	0.32	0.58	0.8805	0.2513	0.7852	1.9595	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16275	18713	4369	6659	11468	22000	11483	9050	11772	10742	9602	12565	9479	8013	6310	11439	8730	15897	15079	7940	15543	9190	18479	13574	13404	10043	5481	10458	6363	10840	12570	10037	12809	5933	8358	17374	9832	7727	9645	20210	11693	11370	9919	19074	11013	9136	10440	8932	5761	8732	9325	18324	4327	7976	11186	9161	2100	9260	12677	4537	10032	2271	5713	4855
GCF_000147395.1	NC_068336	NC_068336.1	Oryza glaberrima chromosome 11; OglaRS2; whole genome shotgun sequence.	7621155	7612388	5588471	5571520	100	26393634	0.29	0.29	0.21	0.21	0.42	0.9531	0.0021	0.9979	1.9827	934	988	1922	2023512	2213506	1599408	1634933	0	7471359	0.25	0.28	0.23	0.24	0.47	0.9116	0.1211	0.8899	1.9718	901	815	796	1611	569995	531008	600192	639831	0	2341026	0.26	0.24	0.23	0.27	0.5	0.8688	0.2759	0.7747	1.9405	0	916351	1075990	580956	582315	3155612	0.28	0.37	0.18	0.17	0.35	0.8668	0.2914	0.7631	1.8956	88	88	176	55474	62504	49430	48531	215939	0.25	0.27	0.24	0.24	0	0.48	0.8733	0.2852	0.7666	1.938	0	77466	90427	53105	53385	0	274383	0.27	0.37	0.19	0.18	0	0.37	0.8739	0.2781	0.7734	1.91	17	8	25	346	470	460	580	1856	0.19	0.25	0.25	0.31	0.56	0.892	0.2868	0.7602	1.9647	0	84	84	2518	2223	2515	2748	10004	0.25	0.22	0.25	0.27	0	0.53	0.8967	0.1102	0.8973	1.9945	18948	22079	5592	8810	13366	24646	13513	11703	13057	13109	12258	15612	11964	8171	7924	13436	11139	16788	16301	10673	16948	10214	19888	17051	15261	11262	7022	13170	8360	12954	14628	12677	13438	7756	11008	18466	11001	8301	10641	20383	13206	11283	13033	19212	12267	11125	10930	11529	7951	10918	9772	17637	5809	10075	12626	11815	2846	9360	12078	5269	13173	3300	7941	5707
GCF_000147395.1	NC_068337	NC_068337.1	Oryza glaberrima chromosome 12; OglaRS2; whole genome shotgun sequence.	7200656	7215376	5292606	5311405	100	25020143	0.29	0.29	0.21	0.21	0.42	0.9526	0.0028	0.9972	1.9832	861	854	1715	1720439	1929619	1395109	1430516	0	6475683	0.25	0.28	0.23	0.24	0.47	0.9107	0.129	0.883	1.9717	1707	754	751	1505	499423	464508	539332	576046	0	2079309	0.26	0.24	0.24	0.27	0.5	0.8676	0.2825	0.7699	1.9393	0	777451	949695	504965	508077	2740188	0.27	0.37	0.18	0.17	0.36	0.8664	0.3029	0.7546	1.897	71	77	148	50064	56769	42893	42202	191928	0.26	0.27	0.23	0.24	0	0.47	0.874	0.2702	0.7775	1.9445	0	49957	58028	31593	31441	0	171019	0.27	0.36	0.19	0.18	0	0.37	0.871	0.2945	0.7624	1.9037	27	17	44	628	818	814	996	3256	0.19	0.25	0.25	0.31	0.56	0.882	0.2727	0.7711	1.9636	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17274	19927	4799	7481	12396	22191	12859	9715	11857	11258	10351	14304	10465	7330	6968	11463	9579	15320	14496	9103	15407	9158	18289	15256	14011	9905	5743	11640	6731	11130	12872	10785	12550	6469	9344	16194	9735	7723	9161	18798	11805	10547	11530	17597	10541	10196	9934	9772	6594	9712	8724	16026	4808	9026	11579	10449	2330	8645	11090	4711	11606	2516	6434	5009
NA	NC_024175	NC_024175.1	Oryza glaberrima plastid; complete genome.	40584	40361	25782	25892	10	132629	0.31	0.3	0.19	0.2	0.39	0.9375	0.0049	0.9951	1.9645	58	69	127	25664	25425	16376	19528	1	86994	0.28	0.29	0.19	0.23	0.43	0.8967	0.2323	0.8003	1.9533	57	36	44	80	16943	17990	10429	12042	1	57405	0.3	0.32	0.17	0.21	0.38	0.8878	0.2771	0.774	1.9266	57	2198	1983	1056	1262	6499	0.34	0.3	0.16	0.2	0.36	0.9013	0.1311	0.77	1.9345	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	19	36	596	684	640	788	2708	0.22	0.25	0.24	0.29	0.53	0.8724	0.2417	0.7985	1.9676	4	4	8	2413	1742	2158	2876	9189	0.27	0.21	0.22	0.3	0	0.52	0.9095	0.3005	0.7458	1.9756	464	280	407	428	353	253	518	796	269	347	544	734	239	114	288	210	366	154	393	711	118	440	140	532	155	197	301	386	524	544	303	462	133	468	270	146	110	169	160	168	109	107	699	140	56	433	266	331	164	322	120	141	675	319	110	223	34	100	99	265	497	56	32	236