GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	fr_gene_N Frequency of 'N' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_N Number of 'N' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_N Number of 'N' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001433935.1	NC_029256	NC_029256.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 1; IRGSP-1.0.	12172333	12155831	9471278	9463081	8400	43270923	0.28	0.28	0.22	0.22	0.44	0.9544	0.0011	0.9989	1.9887	2287	2180	4467	4394593	4966809	3746235	3813064	1000	16921701	0.25	0.28	0.24	0.24	0	0.48	0.9141	0.1238	0.8874	1.9752	30273	2012	1901	3913	1216995	1144929	1392629	1480542	0	5235095	0.25	0.24	0.24	0.27	0	0.51	0.8667	0.2864	0.7671	1.9353	0	1886124	2349772	1257699	1273385	1000	6767980	0.26	0.37	0.18	0.18	0	0.37	0.8682	0.3061	0.7523	1.9039	193	216	409	139448	151172	127199	124028	0	541847	0.26	0.26	0.24	0.24	0	0.48	0.876	0.2812	0.7722	1.9389	0	121453	141092	83397	79144	0	425086	0.27	0.36	0.2	0.18	0	0.37	0.8699	0.3114	0.75	1.9057	48	36	84	1246	1451	1573	1963	6233	0.2	0.23	0.25	0.32	0	0.57	0.8846	0.2239	0.8073	1.9666	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	41343	48431	11905	18462	30020	55436	30893	23187	31931	29121	24021	32967	25792	20567	16578	28416	23467	39772	38378	21542	39227	22160	44770	35498	35622	25918	14005	27431	16493	28138	31379	25519	31838	15829	22880	41343	24554	21131	24662	50303	29699	29127	26591	47670	27833	24397	27464	24319	15832	22050	24383	45052	11605	22393	29092	25366	5661	24141	32249	12642	26560	6195	15867	12763
GCF_001433935.1	NC_029257	NC_029257.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 2; IRGSP-1.0.	10187210	10176687	7782004	7786249	5100	35937250	0.28	0.28	0.22	0.22	0.43	0.9538	0.0008	0.9992	1.987	1832	1811	3643	3656917	4171807	3078465	3150651	0	14057840	0.25	0.28	0.23	0.24	0	0.47	0.914	0.1276	0.8842	1.975	18938	1573	1556	3129	1007226	936323	1111756	1196819	0	4252124	0.26	0.24	0.23	0.27	0	0.5	0.8668	0.2934	0.7624	1.9351	1332	1509575	1905287	1009118	1016820	0	5440800	0.26	0.37	0.18	0.18	0	0.36	0.8673	0.3129	0.7475	1.9007	204	195	399	151159	167503	133549	132556	0	584767	0.26	0.27	0.23	0.24	0	0.47	0.8769	0.2668	0.7813	1.9471	0	155215	186056	104500	104315	0	550086	0.26	0.36	0.19	0.18	0	0.37	0.8717	0.3131	0.7489	1.9058	26	43	69	1051	1207	1296	1598	5152	0.2	0.23	0.25	0.31	0	0.56	0.888	0.2357	0.7972	1.9691	2	0	2	485	473	460	549	0	1967	0.24	0.22	0.26	0.29	0	0.55	0.906	0.0958	0.9112	1.9873	33988	40397	9866	15429	24886	46730	26579	19649	24924	22937	20529	29105	21235	15219	13761	22906	19856	31218	29099	18092	31004	18625	35869	30368	29085	19985	11588	23163	13624	23351	25186	21922	24865	12994	18772	33192	19843	16551	18679	40044	23620	23379	22665	37031	21990	20415	21963	20002	12759	18660	18824	35561	9820	18234	23594	20515	4491	18494	24469	10114	22751	5131	13105	10333
GCF_001433935.1	NC_029258	NC_029258.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 3; IRGSP-1.0.	10244310	10255617	7958395	7946297	9200	36413819	0.28	0.28	0.22	0.22	0.44	0.9569	0.0013	0.9987	1.9883	2002	1934	3936	3785643	4329209	3235831	3325258	500	14676441	0.24	0.28	0.24	0.24	0	0.48	0.9138	0.1282	0.8836	1.9755	22622	1749	1656	3405	1064752	981138	1198493	1296779	0	4541162	0.26	0.23	0.24	0.27	0	0.51	0.8655	0.2898	0.7651	1.934	0	1662751	2112634	1119665	1134451	500	6030001	0.26	0.37	0.19	0.18	0	0.37	0.8683	0.3137	0.7472	1.9034	198	222	420	118091	130854	104933	103772	0	457650	0.26	0.27	0.23	0.24	0	0.47	0.8776	0.2608	0.7841	1.9415	142	91355	106668	62700	61760	0	322483	0.26	0.37	0.19	0.18	0	0.37	0.8693	0.3143	0.7479	1.9011	34	39	73	1063	1252	1375	1696	5386	0.2	0.23	0.26	0.32	0	0.57	0.8851	0.2396	0.7953	1.9661	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	36383	44328	10143	15682	26065	50557	27370	20179	27183	24688	21052	29600	21850	17398	14353	24525	19918	34437	32718	18269	34237	19641	38536	31275	32256	21912	11288	22968	13904	24106	27524	21758	27100	13332	19581	36784	20891	18074	20389	44219	25894	25571	23536	41267	23341	21363	23968	21573	13431	18667	20962	39888	9457	18646	25824	21317	4888	20644	27705	10493	23073	5425	14800	10890
GCF_001433935.1	NC_029259	NC_029259.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 4; IRGSP-1.0.	9904228	9879877	7849057	7852496	17036	35502694	0.28	0.28	0.22	0.22	0.44	0.9472	0.0014	0.9986	1.9902	1447	1507	2954	2980413	3309521	2508634	2568985	276	11367829	0.25	0.28	0.24	0.24	0	0.48	0.9142	0.1227	0.8885	1.9746	7668	1177	1261	2438	772813	723479	863661	929323	10	3289286	0.26	0.24	0.24	0.27	0	0.51	0.8678	0.2827	0.7702	1.9359	0	1234868	1487618	840758	846985	23	4410252	0.27	0.37	0.19	0.18	0	0.37	0.8686	0.2993	0.7575	1.9051	184	181	365	128818	140495	110714	109607	8	489642	0.26	0.27	0.23	0.24	0	0.47	0.8773	0.2584	0.7882	1.9438	0	122925	140394	88316	87187	1	438823	0.26	0.36	0.2	0.18	0	0.38	0.8725	0.3001	0.7579	1.9085	31	32	63	960	1111	1157	1463	4691	0.2	0.24	0.25	0.31	0	0.56	0.8858	0.2364	0.797	1.9676	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26207	30584	7851	11955	19598	34093	19730	14693	19251	18750	15128	21215	16170	13110	10646	18075	14850	24999	23810	13607	24899	14175	27486	22488	22287	15974	8803	17547	10405	17992	20032	16077	19760	10307	14613	25689	15270	12432	14866	30316	18940	17337	17203	29318	17982	15533	16860	15444	10114	13935	15418	27591	7424	13764	18315	15700	3715	15109	19767	8073	17168	4068	10384	8309
GCF_001433935.1	NC_029260	NC_029260.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 5; IRGSP-1.0.	8379826	8408703	6577961	6586044	5900	29958434	0.28	0.28	0.22	0.22	0.44	0.9504	0.0023	0.9977	1.9893	1311	1305	2616	2463676	2792274	2078656	2132479	0	9467085	0.25	0.28	0.24	0.24	0	0.48	0.9124	0.1298	0.8823	1.9738	17543	1136	1119	2255	686355	634717	780916	837934	0	2939922	0.26	0.24	0.24	0.27	0	0.51	0.8658	0.2919	0.7634	1.9348	0	1039712	1301282	681326	691857	0	3714177	0.26	0.37	0.18	0.18	0	0.36	0.8666	0.313	0.7478	1.8994	137	154	291	90780	99368	81421	79538	0	351107	0.26	0.27	0.24	0.24	0	0.47	0.878	0.2603	0.7847	1.9465	41	76241	91854	52785	51386	0	272266	0.26	0.36	0.19	0.18	0	0.37	0.8715	0.3036	0.756	1.906	28	27	55	766	947	1051	1311	4075	0.19	0.23	0.26	0.32	0	0.58	0.8844	0.256	0.7821	1.9601	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23256	28264	6485	10258	16734	33052	17509	12903	17612	15672	13465	19147	13736	11316	9335	15805	12803	22205	21181	11947	21490	12698	25550	20240	19833	14232	7498	14616	9098	15704	17823	14065	18393	8631	12337	24009	13750	11647	13511	28850	16736	16722	15287	27259	15045	13759	15486	13431	8535	12495	13744	26115	6301	12459	16565	14323	3055	13283	18292	6803	15102	3488	9048	7087
GCF_001433935.1	NC_029261	NC_029261.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 6; IRGSP-1.0.	8808966	8798965	6812456	6806551	21849	31248787	0.28	0.28	0.22	0.22	0.44	0.9531	0.001	0.999	1.9878	1352	1364	2716	2681159	3013067	2269726	2313256	0	10277208	0.25	0.28	0.24	0.24	0	0.48	0.9126	0.1239	0.8874	1.9745	10548	1128	1176	2304	720815	681118	838058	887016	0	3127007	0.25	0.24	0.24	0.27	0	0.51	0.8661	0.2843	0.769	1.9347	0	1133105	1389933	752978	764316	0	4040332	0.27	0.37	0.18	0.18	0	0.36	0.8668	0.3096	0.7502	1.9003	190	154	344	114008	125800	98038	95858	0	433704	0.25	0.27	0.24	0.24	0	0.47	0.8779	0.2704	0.7802	1.94	109	101335	115689	72132	71386	0	360542	0.26	0.36	0.2	0.18	0	0.38	0.8718	0.3222	0.7436	1.9097	16	17	33	471	587	616	799	2473	0.19	0.24	0.25	0.32	0	0.57	0.8799	0.2707	0.7713	1.9629	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25030	29169	6778	10881	17312	33398	18404	13711	19165	17282	14715	19376	14957	12526	9638	17479	13986	24362	22349	12693	23201	13466	28757	21434	20866	15482	8106	15994	9594	16509	19441	15335	19544	9016	13188	25420	14717	12361	14497	30859	17696	17628	15406	29149	16406	14223	16092	13691	9343	13316	14757	28227	6705	13015	17026	15044	3048	14333	19688	7340	15521	3543	9656	7561
GCF_001433935.1	NC_029262	NC_029262.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 7; IRGSP-1.0.	8380155	8398303	6442188	6473371	3604	29697621	0.28	0.28	0.22	0.22	0.43	0.9514	0.0035	0.9965	1.9877	1361	1233	2594	2456487	2784509	2080889	2128410	0	9450295	0.25	0.28	0.24	0.24	0	0.48	0.9123	0.1284	0.8839	1.9741	28907	1201	1027	2228	691211	648982	783359	835135	0	2958687	0.26	0.24	0.24	0.27	0	0.51	0.8667	0.2884	0.7666	1.9343	0	996392	1257851	658053	669116	0	3581412	0.26	0.38	0.18	0.18	0	0.36	0.8664	0.3117	0.7485	1.8991	121	168	289	94893	102971	82907	80831	0	361602	0.26	0.27	0.23	0.23	0	0.47	0.8805	0.2512	0.791	1.9472	86	74098	87671	51023	48615	0	261407	0.26	0.37	0.19	0.18	0	0.37	0.8699	0.3113	0.7502	1.9046	21	14	35	498	621	668	835	2622	0.19	0.24	0.26	0.32	0	0.57	0.8807	0.2678	0.7733	1.9628	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23287	27899	6703	10185	16562	31638	17365	13277	17014	16392	14078	19047	14075	11171	9296	16479	12898	22657	21833	12554	21919	12920	26148	20974	19825	14553	7923	15258	9591	15870	18042	14767	18463	8877	12579	24144	13985	11539	13797	28662	16739	16455	15241	26758	15679	14012	15026	13679	9052	12727	13305	25446	6237	12565	16583	14493	3142	12861	18152	6797	14917	3488	8887	7022
GCF_001433935.1	NC_029263	NC_029263.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 8; IRGSP-1.0.	8048431	8053810	6170246	6167535	3000	28443022	0.28	0.28	0.22	0.22	0.43	0.9505	0.0006	0.9994	1.9873	1190	1089	2279	2237672	2514668	1851805	1897808	0	8501953	0.25	0.28	0.23	0.24	0	0.47	0.9124	0.1291	0.883	1.9738	1821	1009	912	1921	592822	552202	664674	711947	0	2521645	0.26	0.23	0.24	0.27	0	0.51	0.8666	0.2872	0.7668	1.9357	0	921149	1132377	603612	613162	0	3270300	0.27	0.37	0.18	0.18	0	0.36	0.8671	0.3072	0.752	1.8987	133	160	293	102712	112336	87789	86824	0	389661	0.26	0.27	0.23	0.24	0	0.47	0.8747	0.2744	0.7758	1.942	550	88286	103314	57636	57237	0	306473	0.27	0.37	0.19	0.17	0	0.36	0.8688	0.3179	0.7452	1.8994	33	11	44	630	767	821	1033	3251	0.19	0.24	0.25	0.32	0	0.57	0.8879	0.247	0.7882	1.9662	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20454	24136	5729	8978	14434	27268	15229	11395	14843	13978	11758	16372	12470	9148	7838	13914	11401	18927	17822	10535	18266	11189	21830	17923	17113	12377	6655	13273	8047	13774	15422	12289	15474	7398	10760	20298	11990	9671	11381	24494	14134	13950	13116	22762	13054	11818	12791	11594	7582	11027	11191	21255	5478	10820	13963	12008	2923	11214	14798	5882	13362	3090	8026	6165
GCF_001433935.1	NC_029264	NC_029264.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 9; IRGSP-1.0.	6501531	6490253	5004958	5007871	8107	23012720	0.28	0.28	0.22	0.22	0.44	0.9516	0.0012	0.9988	1.9877	944	941	1885	1886946	2102109	1568568	1601868	0	7159491	0.25	0.28	0.23	0.24	0	0.47	0.9125	0.1245	0.8868	1.9741	15985	766	812	1578	487169	454869	554818	590974	0	2087830	0.25	0.24	0.24	0.27	0	0.51	0.8676	0.2841	0.7689	1.9355	0	794248	962847	518254	523492	0	2798841	0.27	0.37	0.18	0.18	0	0.36	0.8674	0.3056	0.753	1.8997	133	99	232	93714	101077	79808	78741	0	353340	0.26	0.27	0.23	0.24	0	0.47	0.8787	0.2442	0.7973	1.9451	0	79753	87952	55241	54816	0	277762	0.26	0.36	0.19	0.18	0	0.37	0.8714	0.306	0.7545	1.9056	17	15	32	445	559	592	760	2356	0.19	0.24	0.25	0.32	0	0.57	0.8844	0.2594	0.7791	1.9619	14	0	14	5444	4751	6055	7117	0	23367	0.23	0.21	0.26	0.3	0	0.56	0.908	0.1225	0.8872	1.9813	16936	20010	4744	7396	11971	22380	12485	8953	12506	11849	9407	13215	10113	8075	6401	11540	8974	15714	14886	8457	15539	8904	18118	13949	13888	10320	5643	11248	6617	10997	12589	10149	12633	6268	8943	17091	10076	8238	9749	20793	11935	11454	10486	18963	11118	9641	10586	9632	6443	8932	9422	17964	4620	8738	11541	9863	2440	9508	12742	5162	10825	2621	6450	5109
GCF_001433935.1	NC_029265	NC_029265.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 10; IRGSP-1.0.	6531003	6553809	5062726	5043885	15864	23207287	0.28	0.28	0.22	0.22	0.44	0.9513	0.0036	0.9964	1.9877	935	935	1870	1862344	2065036	1545830	1582911	500	7056621	0.25	0.28	0.23	0.24	0	0.48	0.912	0.1266	0.8856	1.9739	3861	759	769	1528	478984	449480	546367	584291	0	2059122	0.25	0.24	0.24	0.27	0	0.51	0.8677	0.2802	0.7718	1.9358	4	782230	935485	514804	518665	500	2751684	0.27	0.37	0.18	0.18	0	0.36	0.8666	0.3042	0.7546	1.8986	137	124	261	96621	107045	82924	82615	0	369205	0.26	0.27	0.23	0.24	0	0.47	0.8767	0.2639	0.7835	1.9445	90	100347	113052	67889	66364	0	347652	0.26	0.37	0.19	0.18	0	0.37	0.8718	0.3113	0.7493	1.9046	20	27	47	729	846	856	1087	3518	0.21	0.24	0.24	0.31	0	0.55	0.8869	0.2412	0.7929	1.9674	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16816	19231	4646	6826	11644	22365	11778	9379	11931	10986	10032	12947	9645	7998	6471	11736	8890	16076	15227	8313	15790	9216	18518	13810	13890	10195	5589	10920	6503	10978	12628	10309	12971	6219	8673	17377	9908	7833	9740	20188	11808	11426	10241	19131	11152	9431	10671	9246	5933	8883	9320	18151	4496	8129	11425	9372	2124	9089	12620	4592	10303	2334	5632	4890
GCF_001433935.1	NC_029266	NC_029266.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 11; IRGSP-1.0.	8283804	8278422	6217527	6228970	12383	29021106	0.29	0.29	0.21	0.21	0.43	0.9521	0.0012	0.9988	1.9852	1282	1080	2362	2374392	2593410	1895071	1931365	619	8794857	0.26	0.28	0.23	0.24	0	0.47	0.9125	0.1208	0.89	1.9745	9421	880	886	1766	617647	576319	644360	686683	5	2525014	0.26	0.24	0.23	0.26	0	0.5	0.8692	0.2768	0.7741	1.9397	0	946791	1112135	611265	613779	600	3284570	0.27	0.37	0.18	0.17	0	0.35	0.8666	0.2956	0.7602	1.8954	182	164	346	128335	139044	110566	107475	0	485420	0.26	0.27	0.23	0.23	0	0.47	0.8787	0.2682	0.7798	1.9426	0	120433	139635	82091	79794	0	421953	0.26	0.37	0.19	0.18	0	0.37	0.8717	0.2981	0.7598	1.9056	18	10	28	398	509	520	651	2078	0.19	0.25	0.25	0.31	0	0.56	0.889	0.2624	0.7776	1.9667	173	0	173	5047	4406	5307	5828	14	20602	0.24	0.21	0.26	0.28	0	0.54	0.894	0.1159	0.8912	1.9918	20507	23996	6167	9480	14488	26547	14778	12748	13946	14285	13449	17263	12911	8710	8640	14572	12052	18022	17452	11647	18244	11051	21634	18965	16233	11943	7736	14589	9059	13782	15875	14148	14433	8508	11945	19976	12042	8812	11438	21602	14322	11977	14443	20619	13301	12169	11673	12267	8495	11963	10288	18236	6365	10926	13593	12686	2835	9780	12548	5792	14228	3366	8071	6003
GCF_001433935.1	NC_029267	NC_029267.1	Oryza sativa Japonica Group cultivar Nipponbare chromosome 12; IRGSP-1.0.	7849069	7837653	5914156	5924767	6211	27531856	0.29	0.28	0.21	0.22	0.43	0.9516	0.0016	0.9984	1.9857	1008	975	1983	2055116	2288854	1663539	1696700	100	7704309	0.25	0.28	0.23	0.23	0	0.46	0.9126	0.1296	0.8827	1.9734	7203	819	803	1622	538159	499219	569360	608626	0	2215364	0.26	0.24	0.24	0.27	0	0.5	0.8681	0.2844	0.7688	1.9396	0	809555	985695	532897	537730	0	2865877	0.27	0.37	0.18	0.18	0	0.36	0.8666	0.3052	0.753	1.8972	153	130	283	122633	132607	102180	98211	0	455631	0.27	0.28	0.23	0.23	0	0.46	0.879	0.2522	0.7912	1.9446	0	88377	102207	60088	58392	0	309064	0.27	0.37	0.19	0.17	0	0.36	0.8698	0.3064	0.7533	1.9016	26	26	52	760	953	948	1161	3822	0.2	0.25	0.25	0.3	0	0.55	0.8841	0.2542	0.7852	1.9674	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18516	21143	5327	8171	13228	23264	13540	10641	12518	12151	11392	15544	11327	7669	7652	12249	10409	15972	15238	10011	16079	9770	18791	16505	14742	10609	6420	12613	7344	12066	13687	11489	13048	7205	10147	16909	10311	8303	9626	19439	12469	11001	12595	18088	11218	10992	10523	10654	7158	10559	9130	16190	5443	9771	12343	11304	2588	8964	11482	5168	12462	2814	6990	5484
NA	NC_001320	NC_001320.1	Oryza sativa Japonica Group plastid; complete genome.	41248	40831	26126	26320	0	134525	0.31	0.3	0.19	0.2	0.39	0.9383	0.0088	0.9913	1.9647	74	80	154	27053	27121	17519	20639	0	92332	0.28	0.29	0.19	0.23	0	0.43	0.8932	0.2302	0.8034	1.9522	61	51	54	105	18845	20188	11916	13476	0	64425	0.3	0.32	0.18	0.21	0	0.39	0.8872	0.2571	0.7879	1.9327	61	2181	1960	1049	1248	0	6438	0.34	0.3	0.16	0.2	0	0.36	0.8999	0.1335	0.7681	1.9341	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	20	38	614	697	652	821	2784	0.22	0.25	0.23	0.3	0	0.53	0.8755	0.2364	0.8021	1.9684	4	4	8	2416	1742	2150	2874	0	9182	0.27	0.21	0.22	0.3	0	0.52	0.9096	0.3014	0.7452	1.9756	526	325	447	469	378	293	562	852	327	400	603	803	268	121	309	249	425	176	479	800	130	455	184	582	176	226	341	433	585	582	363	540	153	514	296	178	122	191	180	189	115	126	781	167	81	482	306	390	186	354	144	153	729	363	141	257	44	116	115	286	535	59	44	263
NA	NC_011033	NC_011033.1	Oryza sativa Japonica Group mitochondrion; complete genome.	136863	138549	107346	107758	1	490517	0.28	0.28	0.22	0.22	0.44	0.8579	0.008	0.992	1.9891	33	42	75	17017	17298	14765	16076	0	65156	0.26	0.28	0.22	0.24	0	0.46	0.9009	0.2036	0.8232	1.9758	0	18	26	44	8540	9526	6904	7130	0	32100	0.27	0.3	0.21	0.22	0	0.44	0.901	0.2045	0.8226	1.9725	0	2473	2247	2443	2741	0	9904	0.24	0.23	0.25	0.28	0	0.53	0.9223	0.113	0.8952	1.9933	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10	9	19	341	396	330	404	1471	0.23	0.27	0.23	0.27	0	0.5	0.8868	0.2268	0.8052	1.9747	1	2	3	1362	1142	1251	1569	0	5324	0.26	0.22	0.24	0.29	0	0.52	0.9138	0.1862	0.8313	1.9908	258	189	147	184	177	169	251	328	166	193	236	332	180	72	145	141	222	142	271	391	132	174	142	277	113	128	134	258	218	233	207	249	117	221	142	126	78	137	100	121	98	78	269	103	80	216	150	197	90	191	127	106	226	179	108	190	27	102	97	130	238	29	24	140
NA	NC_001751	NC_001751.1	Oryza sativa (japonica cultivar-group) mitochondrial plasmid B1; complete sequence.	545	647	494	449	0	2135	0.26	0.3	0.23	0.21	0.44	0.9264	0.1333	0.8756	1.9865	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0