GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_024323335.1	NC_066579	NC_066579.1	Pisum sativum cultivar Zhongwan6 chromosome 1; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	143568704	143681732	87592679	87496199	1305186	463644500	0.31	0.31	0.19	0.19	0.38	0.922	0.0009	0.9991	1.9557	3363	3775	7138	7320807	7916677	4173626	4541015	8621	23960746	0.3	0.32	0.18	0.2	0.38	0.8999	0.188	0.8361	1.9376	11041	2430	2568	4998	1856406	1741950	1150767	1370317	6119440	0.3	0.29	0.18	0.23	0.41	0.8716	0.308	0.7529	1.9398	5	3377227	3856862	1845625	1929831	500	11010045	0.29	0.41	0.14	0.16	0.3	0.8489	0.3395	0.7295	1.8379	809	828	1637	310031	336313	193308	213378	1053030	0.29	0.33	0.19	0.2	0.39	0.8726	0.3259	0.7384	1.9265	83	474145	538267	248819	287381	0	1548612	0.26	0.41	0.15	0.18	0.33	0.8482	0.444	0.6615	1.8414	105	103	208	3354	3711	3636	4446	15147	0.22	0.25	0.24	0.29	0.53	0.8865	0.2198	0.8093	1.9786	0	251	251	7557	7473	8552	9524	33106	0.23	0.23	0.26	0.28	0	0.55	0.9042	0.0479	0.9542	1.9931	54910	63029	21557	34929	34808	46536	42388	55095	22757	31955	58252	70811	41001	10384	31822	36162	43100	32357	38335	53714	22754	36084	25091	62963	27257	21068	23158	53547	38311	41266	31307	44263	19534	33559	35790	26625	18664	12781	21900	17679	19848	7717	70749	16085	19338	52759	18181	41471	28766	35030	13675	10325	33743	32935	26345	31893	9591	8068	11915	12237	51687	12325	19956	12336
GCF_024323335.1	NC_066580	NC_066580.1	Pisum sativum cultivar Zhongwan6 chromosome 2; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	151940486	151864048	93903060	93947740	1073666	492729000	0.31	0.31	0.19	0.19	0.38	0.9193	0.0005	0.9995	1.9584	3236	3371	6607	6730204	7239602	3888540	4255166	8096	22121608	0.29	0.32	0.18	0.2	0.38	0.9	0.2	0.8265	1.9398	113885	2306	2323	4629	1688523	1576864	1051923	1253722	5571032	0.3	0.29	0.18	0.23	0.41	0.8709	0.3118	0.7503	1.9394	4	3109549	3514463	1725726	1820093	7583	10177414	0.29	0.41	0.14	0.16	0.3	0.8488	0.3471	0.725	1.8382	781	910	1691	262260	292988	164228	188438	907914	0.28	0.33	0.19	0.21	0.39	0.8732	0.3237	0.7397	1.9312	0	386155	447393	208472	241850	500	1284370	0.26	0.41	0.15	0.18	0.33	0.8509	0.4497	0.6574	1.8479	120	114	234	3533	4163	4343	5361	17400	0.2	0.24	0.25	0.31	0.56	0.8892	0.2363	0.7958	1.9727	1	0	1	37	38	36	45	156	0.24	0.24	0.23	0.29	0	0.52	0.8809	0.1244	0.8868	1.9942	50241	57527	19872	31895	30880	43353	39328	49021	21633	28505	51615	65381	36608	9606	28766	33316	40128	29654	34085	48185	20662	32352	22769	57963	24965	19357	20759	48116	34380	37127	28452	39586	17985	29818	32349	24750	17051	11848	19853	15981	18120	6909	64002	14373	18471	47766	16895	38330	26244	32010	12355	9872	30420	29779	24289	29284	8701	7545	10991	11553	47009	11371	18455	11760
GCF_024323335.1	NC_066581	NC_066581.1	Pisum sativum cultivar Zhongwan6 chromosome 3; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	165271740	165168482	102221815	102153217	859119	535674373	0.31	0.31	0.19	0.19	0.38	0.9206	0.0006	0.9994	1.9587	4148	3813	7961	7423966	8045900	4341736	4740579	38344	24590525	0.29	0.32	0.19	0.21	0.39	0.8999	0.1891	0.8352	1.9436	52883	2618	2538	5156	1848977	1736302	1167414	1381647	6134340	0.3	0.29	0.19	0.23	0.41	0.8718	0.309	0.7522	1.9409	8	3690912	4174635	2077899	2184171	25126	12152743	0.29	0.41	0.15	0.16	0.31	0.8508	0.3428	0.7273	1.843	918	932	1850	307425	339700	189967	216874	1053966	0.28	0.33	0.19	0.2	0.39	0.8723	0.3173	0.7439	1.9284	90	442248	519564	245190	284244	0	1491246	0.26	0.41	0.15	0.18	0.33	0.8489	0.451	0.655	1.8469	166	177	343	5444	6378	6195	8119	26136	0.21	0.24	0.24	0.31	0.55	0.8822	0.251	0.7863	1.9715	421	140	561	23306	22919	24803	29054	100082	0.23	0.23	0.26	0.29	0	0.54	0.9051	0.0605	0.9428	1.9933	54577	63238	21724	34886	34361	47626	43131	54117	23739	30951	55825	70772	40530	10460	31838	36453	43888	32699	38603	52920	23787	35920	25854	63432	27929	22005	23058	53513	37342	40419	32034	43499	20194	32213	35637	27526	19056	13488	21851	18472	20434	7813	69792	16386	19937	53018	18620	42148	28982	34835	13561	10435	32725	33105	27161	32222	9375	8170	12009	12511	50931	12144	20785	12722
GCF_024323335.1	NC_066582	NC_066582.1	Pisum sativum cultivar Zhongwan6 chromosome 4; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	154929163	154988383	94909542	94802951	1982961	501613000	0.31	0.31	0.19	0.19	0.38	0.9239	0.0008	0.9992	1.9558	3720	3656	7376	7425574	8063467	4340515	4751708	52	24581316	0.29	0.32	0.18	0.2	0.38	0.9006	0.1982	0.8279	1.9402	54298	2735	2721	5456	1987173	1851680	1266760	1494871	6600484	0.3	0.28	0.19	0.23	0.41	0.8719	0.3053	0.7547	1.9422	5	3501405	4020075	1939220	2062329	26	11523055	0.29	0.41	0.15	0.16	0.31	0.8495	0.3481	0.7239	1.8411	806	804	1610	289267	323330	181252	202520	996369	0.28	0.33	0.19	0.2	0.39	0.8736	0.3242	0.7393	1.929	60	341459	403756	191435	223431	13	1160094	0.26	0.42	0.15	0.18	0.33	0.8508	0.4557	0.6528	1.8461	115	113	228	3367	4400	4028	5296	17091	0.2	0.26	0.24	0.31	0.55	0.8856	0.2773	0.7649	1.9698	30	0	30	11026	10635	10409	13450	45520	0.24	0.24	0.23	0.29	0	0.52	0.9102	0.1456	0.868	1.992	57554	67423	22687	37940	37335	51231	46427	56253	26199	34204	60099	75286	43833	11516	34071	39418	47053	34598	41394	55613	25717	38698	27942	68131	30555	23726	24855	55871	39335	43867	33588	46540	21519	34541	37954	30340	21150	14882	24151	20139	22054	9364	75025	17841	21962	56238	21107	45391	30450	37553	14922	11820	34521	34886	29407	34117	10493	9328	13868	13865	55141	13887	23386	13932
GCF_024323335.1	NC_066583	NC_066583.1	Pisum sativum cultivar Zhongwan6 chromosome 5; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	201970270	201845950	123875157	123954896	1283687	652929960	0.31	0.31	0.19	0.19	0.38	0.9227	0.0006	0.9994	1.9572	5157	5408	10565	9763175	10597771	5654969	6176449	18229	32210593	0.29	0.32	0.18	0.2	0.39	0.9001	0.1949	0.8305	1.9419	100933	3518	3692	7210	2665216	2489199	1671287	1977927	8803629	0.3	0.28	0.19	0.23	0.41	0.8724	0.3072	0.7533	1.9419	6	4455640	5128311	2459204	2583276	16636	14643067	0.29	0.41	0.15	0.16	0.31	0.8497	0.3471	0.7244	1.8415	1203	1269	2472	389056	428273	241926	272980	1332235	0.28	0.33	0.19	0.2	0.39	0.8723	0.3158	0.745	1.9307	585	669605	749553	379375	418365	0	2216898	0.26	0.41	0.15	0.18	0.33	0.8484	0.4432	0.6625	1.8423	186	408	594	8830	11144	10662	13957	44593	0.2	0.25	0.24	0.31	0.55	0.8958	0.2861	0.7584	1.9664	207	0	207	6885	6854	7426	8445	29610	0.23	0.23	0.26	0.29	0	0.54	0.9042	0.0552	0.9475	1.9932	77569	89608	31048	50625	49409	68254	61614	77177	34316	45475	82283	102234	58453	14937	45444	52978	63346	46305	54258	76396	32805	51248	36667	92842	39463	30947	32985	76164	53872	59353	44343	63484	27952	46881	51488	39724	27021	19411	31499	25611	28757	11395	102390	23494	28533	75930	26931	60302	41148	49447	20085	14952	47151	47560	37931	46509	12984	11801	17180	17908	74614	17127	28627	18613
GCF_024323335.1	NC_066584	NC_066584.1	Pisum sativum cultivar Zhongwan6 chromosome 6; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	161841973	161826249	99152425	99117525	1456918	523395090	0.31	0.31	0.19	0.19	0.38	0.9228	0.0002	0.9998	1.9565	3857	4008	7865	7844273	8553856	4517231	4943437	2519	25861316	0.29	0.33	0.18	0.2	0.38	0.9007	0.1976	0.8284	1.9395	57031	2824	2847	5671	2108007	1961899	1326588	1575010	6971504	0.3	0.28	0.19	0.23	0.42	0.8719	0.3132	0.7494	1.9412	43	3789274	4365702	2078459	2193517	2506	12429458	0.29	0.41	0.15	0.16	0.31	0.8507	0.3483	0.7237	1.8431	905	888	1793	302812	336607	187225	212506	1039150	0.28	0.33	0.19	0.2	0.39	0.8724	0.3212	0.7418	1.9286	188	399726	470220	212757	258048	0	1340751	0.25	0.42	0.15	0.18	0.33	0.8469	0.4647	0.6489	1.8446	90	251	341	4813	6222	6070	7791	24896	0.19	0.25	0.24	0.31	0.56	0.8947	0.2631	0.7756	1.9701	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	61725	72382	24419	39386	39605	54163	48582	60632	27143	36281	64031	80553	46561	12093	36069	41065	49628	36515	43519	59128	27142	40551	29285	71656	32272	24790	25817	60536	42002	46429	35720	49615	22369	36816	40738	31158	22033	15465	24637	20498	23309	9074	79940	18765	23022	59017	21568	48645	31985	39529	15459	12222	36680	37354	30457	36861	11751	9583	13799	14080	57478	14578	24846	14303
GCF_024323335.1	NC_066585	NC_066585.1	Pisum sativum cultivar Zhongwan6 chromosome 7; CAAS_Psat_ZW6_1.0; whole genome shotgun sequence.	169424088	169574408	104031338	104118513	1957653	549106000	0.31	0.31	0.19	0.19	0.38	0.9227	0.0009	0.9991	1.9565	4367	4214	8581	9072969	9793177	5295203	5720204	831	29882384	0.29	0.32	0.18	0.2	0.38	0.9001	0.1949	0.8303	1.9412	263036	3057	2960	6017	2184235	2049584	1381796	1628220	7243835	0.3	0.28	0.19	0.23	0.41	0.8721	0.3085	0.7529	1.9411	21	4105462	4674770	2293702	2386362	26	13460322	0.29	0.41	0.15	0.16	0.31	0.8502	0.3449	0.726	1.842	965	1024	1989	316313	352322	199883	226340	1094858	0.28	0.33	0.19	0.21	0.39	0.8724	0.3244	0.7389	1.93	242	551128	622416	315944	358855	52	1848395	0.26	0.41	0.15	0.18	0.33	0.8511	0.442	0.6615	1.8503	297	113	410	6283	7358	7544	9226	30411	0.21	0.24	0.25	0.3	0.55	0.8895	0.2115	0.8154	1.9773	1	86	87	36259	34377	34736	45077	150449	0.24	0.24	0.23	0.29	0	0.52	0.9115	0.1506	0.8638	1.991	64478	74353	25210	41311	41088	55668	51884	63532	28135	36977	66181	83090	47780	12157	37278	43446	51986	37938	45088	62430	27886	42248	30749	75012	33366	26071	27349	62452	44431	48407	37579	52640	23152	38479	41721	32245	22459	15999	25893	21632	24027	9525	82593	19295	23645	62147	22337	49741	33540	41056	15984	12309	38942	39341	31666	38193	11183	9764	13934	15085	60380	14805	24107	14790