GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000002775.5	NC_037285	NC_037285.2	Populus trichocarpa isolate Nisqually-1 chromosome 1; P.trichocarpa_v4.1; whole genome shotgun sequence.	16557653	16506715	8330127	8314086	80000	49788581	0.33	0.33	0.17	0.17	0.33	0.9444	0.0025	0.9975	1.919	1934	1992	3926	5947582	6701427	3508270	3809265	20000	19986544	0.29	0.33	0.18	0.2	0.39	0.911	0.16	0.8573	1.9495	376497	1718	1782	3500	1411389	1344514	968480	1159196	4883579	0.29	0.28	0.19	0.24	0.43	0.8723	0.3031	0.7557	1.9522	1254	2496750	3136062	1387257	1480392	10000	8510461	0.27	0.4	0.16	0.17	0.33	0.8616	0.3405	0.7281	1.8734	0	152	151	303	93136	101050	58355	62194	314735	0.29	0.31	0.19	0.2	0	0.39	0.8764	0.2822	0.7714	1.9333	0	268633	275046	140424	141732	825835	0.28	0.39	0.16	0.17	0	0.33	0.8646	0.3376	0.7332	1.8736	38	27	65	928	1159	1209	1546	4842	0.19	0.24	0.25	0.32	0.57	0.8815	0.2845	0.7616	1.9622	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	41966	48705	15825	26679	32987	41224	37447	38413	20424	28285	41304	50626	34905	7121	24827	25839	35884	27397	29865	39459	25179	28138	21716	48726	27832	16967	17115	42093	25781	33858	24293	36589	16138	22417	27905	20828	15544	11695	16507	16741	21560	6268	46542	17357	20102	36996	20536	33697	21073	26686	10017	7223	21922	27129	24868	29455	7423	6974	7423	8947	37805	9277	18422	9579
GCF_000002775.5	NC_037286	NC_037286.2	Populus trichocarpa isolate Nisqually-1 chromosome 2; P.trichocarpa_v4.1; whole genome shotgun sequence.	8348535	8374288	4248203	4251349	20000	25242375	0.33	0.33	0.17	0.17	0.34	0.9463	0.0019	0.9981	1.9215	1155	1123	2278	2723678	3156344	1679572	1843074	0	9402668	0.28	0.33	0.19	0.2	0.39	0.9127	0.1551	0.8608	1.954	63684	1052	992	2044	792300	758573	561548	667387	2779808	0.29	0.27	0.2	0.24	0.44	0.8736	0.3003	0.7575	1.9549	0	1115738	1467017	637774	683541	0	3904070	0.27	0.4	0.16	0.17	0.33	0.8619	0.3449	0.7247	1.8775	0	74	89	163	56392	65920	36363	39836	198511	0.29	0.31	0.19	0.21	0	0.4	0.8772	0.2906	0.764	1.9335	0	61365	70651	30683	34853	197552	0.27	0.4	0.16	0.18	0	0.33	0.8575	0.3665	0.7135	1.8667	18	20	38	543	668	709	881	2801	0.19	0.24	0.25	0.32	0.57	0.8805	0.2516	0.7881	1.9636	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23691	27566	8616	14904	18942	23782	21783	21145	12259	15668	22602	28257	19450	4455	13750	14474	20582	16188	16576	22045	14891	15713	13032	27843	17027	9709	9444	23541	14172	18988	13684	20452	9549	12131	15355	12120	9291	7046	9489	10087	12563	3927	25815	10195	11588	21176	11787	18958	12011	15189	6242	4770	11987	15502	14432	16479	4191	4474	4507	5586	20851	5057	10250	5820
GCF_000002775.5	NC_037287	NC_037287.2	Populus trichocarpa isolate Nisqually-1 chromosome 3; P.trichocarpa_v4.1; whole genome shotgun sequence.	7175198	7194974	3649747	3638715	20000	21678634	0.33	0.33	0.17	0.17	0.34	0.942	0.0029	0.9971	1.921	956	919	1875	2712694	3094573	1606982	1751107	0	9165356	0.28	0.33	0.18	0.2	0.39	0.9114	0.1582	0.8586	1.9498	202733	851	808	1659	676433	645237	466663	558467	2346800	0.29	0.28	0.19	0.24	0.43	0.8717	0.305	0.7548	1.9517	0	1161543	1476410	639265	689885	0	3967103	0.27	0.4	0.16	0.17	0.33	0.8623	0.3404	0.7281	1.8755	0	68	89	157	40788	46678	26722	28791	142979	0.28	0.31	0.19	0.21	0	0.4	0.8759	0.2915	0.7662	1.931	0	92554	99054	47802	48479	287889	0.28	0.39	0.16	0.17	0	0.33	0.8611	0.3157	0.7513	1.8684	19	20	39	560	695	733	956	2944	0.19	0.24	0.25	0.32	0.58	0.8781	0.2941	0.7524	1.9598	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20161	23409	7485	12550	15984	19754	17672	18603	9819	13589	19715	23961	16664	3618	11823	12402	17161	13289	14342	18903	12464	13232	10671	23322	13832	8143	8079	20241	12431	16220	11844	17660	7885	10670	13410	10012	7519	5697	7811	8026	10522	3147	22127	8319	9826	17910	10010	16148	10110	12958	4739	3663	10175	12726	11990	13968	3565	3446	3508	4414	18247	4436	9076	4665
GCF_000002775.5	NC_037288	NC_037288.2	Populus trichocarpa isolate Nisqually-1 chromosome 4; P.trichocarpa_v4.1; whole genome shotgun sequence.	7988059	7992379	4063404	4056196	40000	24140038	0.33	0.33	0.17	0.17	0.34	0.9398	0.0012	0.9988	1.921	923	1004	1927	2570385	2930802	1526066	1682776	0	8710029	0.29	0.33	0.18	0.2	0.39	0.9101	0.1633	0.8541	1.9504	86367	821	891	1712	677394	650187	464453	560860	2352894	0.29	0.28	0.19	0.24	0.43	0.8733	0.3003	0.7574	1.9535	0	1041419	1342729	581729	632811	0	3598688	0.27	0.4	0.16	0.17	0.33	0.8613	0.352	0.7204	1.8733	0	68	81	149	46894	51021	30217	31789	159921	0.3	0.31	0.19	0.21	0	0.39	0.8744	0.2852	0.7719	1.9295	0	108743	113016	53616	58397	333772	0.28	0.39	0.16	0.17	0	0.33	0.8654	0.3276	0.7387	1.8773	21	16	37	536	665	685	857	2743	0.2	0.24	0.25	0.31	0.56	0.8906	0.229	0.8016	1.9725	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20367	23950	7523	12665	16210	20100	18359	18786	9781	13368	19341	24708	16427	3483	11826	12481	17175	13456	14258	19273	12223	13281	10599	23515	13345	8256	8444	20652	12223	16140	11824	17754	7936	10799	12936	9916	7441	5343	8079	8181	10216	2962	22364	8459	9866	18322	9946	16066	10612	12888	4737	3604	10610	12779	12040	13687	3575	3367	3539	4396	17999	4342	8468	4655
GCF_000002775.5	NC_037289	NC_037289.2	Populus trichocarpa isolate Nisqually-1 chromosome 5; P.trichocarpa_v4.1; whole genome shotgun sequence.	8288653	8273269	4198419	4170762	50000	24981103	0.33	0.33	0.17	0.17	0.34	0.9416	0.0042	0.9958	1.9197	1094	1108	2202	2575096	2967769	1566022	1733568	0	8842455	0.28	0.33	0.18	0.2	0.39	0.9102	0.1645	0.8535	1.9507	60594	950	954	1904	775155	735410	529968	639483	2680016	0.29	0.27	0.19	0.24	0.44	0.8722	0.3044	0.7551	1.9529	0	1010066	1337565	566641	619124	0	3533396	0.27	0.4	0.16	0.17	0.33	0.8608	0.3544	0.7189	1.8734	0	115	111	226	60894	66388	38122	41370	206774	0.29	0.31	0.19	0.21	0	0.4	0.8772	0.2761	0.7772	1.9331	482	74390	82449	37367	40903	235109	0.29	0.38	0.16	0.17	0	0.33	0.8608	0.3463	0.727	1.8675	18	30	48	684	838	900	1127	3549	0.19	0.24	0.26	0.32	0.57	0.8752	0.2593	0.7843	1.9601	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23024	27099	8535	14740	17896	23681	20833	20927	11395	14821	22636	28210	18760	4087	13679	14049	19749	15244	16214	21540	13860	14957	12051	26942	15679	9303	9037	23326	13753	18311	13321	19823	9050	12178	15137	11490	8647	6322	8954	9037	11641	3503	26016	9527	10887	20553	11430	18738	11817	14711	5655	4294	11816	14574	13631	15668	4148	3940	4101	5086	20540	4901	10048	5126
GCF_000002775.5	NC_037290	NC_037290.2	Populus trichocarpa isolate Nisqually-1 chromosome 6; P.trichocarpa_v4.1; whole genome shotgun sequence.	9180751	9167942	4571253	4556706	40000	27516652	0.33	0.33	0.17	0.17	0.33	0.9428	0.0023	0.9977	1.9165	1190	1204	2394	3282507	3770508	1973933	2158925	0	11185873	0.28	0.33	0.18	0.2	0.39	0.9112	0.1623	0.8548	1.9501	419447	1051	1114	2165	864335	829302	597001	714059	3004697	0.29	0.28	0.19	0.24	0.43	0.8725	0.301	0.7573	1.9526	1	1336172	1740913	752804	814540	0	4644429	0.27	0.4	0.16	0.17	0.33	0.8606	0.3536	0.7195	1.8717	104906	100	61	161	48233	52529	30616	32660	164038	0.3	0.31	0.19	0.21	0	0.4	0.8799	0.264	0.7864	1.9354	99	59971	68060	32464	33893	194388	0.28	0.4	0.15	0.16	0	0.32	0.8563	0.3351	0.7322	1.8533	21	16	37	540	648	702	882	2772	0.19	0.23	0.25	0.32	0.57	0.8909	0.2356	0.7961	1.9681	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25742	30048	9777	16554	20537	25352	23310	23610	12876	17307	24923	30598	21403	4541	15557	15770	22628	16755	18220	24287	14980	16905	13409	29670	17351	10406	10380	25816	15736	20739	15098	22666	10088	13650	16836	12699	9567	7223	10014	10627	13407	3704	28699	10726	12395	23272	12716	20549	13401	16559	6325	4571	13404	16734	15321	17636	4622	4357	4572	5638	23033	5537	11727	5729
GCF_000002775.5	NC_037291	NC_037291.2	Populus trichocarpa isolate Nisqually-1 chromosome 7; P.trichocarpa_v4.1; whole genome shotgun sequence.	5168450	5138995	2608005	2615970	30000	15561420	0.33	0.33	0.17	0.17	0.34	0.9418	0.0044	0.9956	1.9204	579	689	1268	1635612	1869025	979368	1079234	0	5563239	0.29	0.33	0.18	0.2	0.39	0.9102	0.1592	0.8576	1.9499	70194	505	604	1109	446409	424605	304350	365532	1540896	0.29	0.28	0.19	0.24	0.43	0.872	0.3015	0.7573	1.9524	474	669478	866273	372642	406478	0	2314871	0.27	0.4	0.16	0.17	0.33	0.86	0.3521	0.7202	1.8709	0	49	67	116	33201	34831	20801	22792	111625	0.3	0.31	0.19	0.21	0	0.39	0.8793	0.2761	0.7776	1.9348	0	36678	39817	17434	18839	112768	0.28	0.39	0.16	0.17	0	0.33	0.8579	0.3558	0.7184	1.8667	15	9	24	371	430	435	573	1809	0.2	0.24	0.24	0.32	0.56	0.8752	0.2578	0.7804	1.9667	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13132	15279	4991	8525	10498	13217	11819	12127	6497	8865	12711	16251	11116	2321	7924	8152	11258	8474	9265	12509	7793	8767	6731	15469	8613	5443	5558	13295	8241	10603	7658	11679	5179	7157	8765	6718	4822	3545	5268	5270	6789	2010	14913	5467	6284	11579	6354	10847	6975	8478	3115	2361	6952	8424	7888	9110	2334	2116	2275	2875	11693	2916	5787	3014
GCF_000002775.5	NC_037292	NC_037292.2	Populus trichocarpa isolate Nisqually-1 chromosome 8; P.trichocarpa_v4.1; whole genome shotgun sequence.	6216881	6260163	3337510	3350706	30000	19195260	0.32	0.33	0.17	0.17	0.35	0.9472	0.0054	0.9946	1.9324	1034	946	1980	2333451	2704473	1456061	1601538	0	8095523	0.28	0.33	0.19	0.21	0.39	0.9118	0.1603	0.8566	1.9534	22451	889	820	1709	667448	638357	465425	559681	2330911	0.29	0.28	0.2	0.24	0.44	0.8725	0.3005	0.7575	1.9539	0	933842	1249035	538663	585803	0	3307343	0.26	0.4	0.16	0.17	0.34	0.8628	0.3469	0.7235	1.8774	0	81	79	160	56297	63925	35510	39605	195337	0.29	0.31	0.19	0.21	0	0.4	0.8776	0.2841	0.7717	1.9335	119	45834	52572	26439	28565	153410	0.27	0.39	0.16	0.18	0	0.34	0.858	0.3522	0.7198	1.8744	13	30	43	592	775	790	1016	3173	0.19	0.24	0.25	0.32	0.57	0.894	0.2813	0.7601	1.966	39	0	39	15265	13440	16670	20699	66074	0.23	0.22	0.25	0.3	0	0.55	0.9006	0.1414	0.8697	1.985	20064	23013	7545	12777	15933	19974	17931	18383	10117	13230	18755	23258	16583	3661	11652	12016	17054	13323	14168	18626	12464	13407	10509	23088	13962	8383	7908	19663	12220	16240	11722	17225	7916	10541	12931	9927	7436	5601	8076	8405	10481	3051	21913	8605	9671	17540	10102	16322	10062	12499	4944	3793	10189	12642	12350	13753	3551	3648	3742	4354	17334	4319	9183	4640
GCF_000002775.5	NC_037293	NC_037293.2	Populus trichocarpa isolate Nisqually-1 chromosome 9; P.trichocarpa_v4.1; whole genome shotgun sequence.	4260911	4283240	2213692	2219556	10000	12987399	0.33	0.33	0.17	0.17	0.34	0.9386	0.0039	0.9961	1.926	725	741	1466	1584387	1852043	980859	1087066	0	5504355	0.28	0.33	0.19	0.21	0.39	0.9113	0.1597	0.8569	1.9537	15459	644	663	1307	501250	480685	349633	420779	1752347	0.29	0.28	0.2	0.24	0.44	0.872	0.3069	0.753	1.9536	0	676061	906222	384923	420661	0	2387867	0.27	0.4	0.16	0.17	0.33	0.8616	0.3507	0.7207	1.8745	0	50	50	100	33116	37534	21384	22800	114834	0.29	0.31	0.19	0.2	0	0.4	0.8824	0.256	0.7893	1.9387	0	27521	30974	14422	15717	88634	0.27	0.4	0.16	0.17	0	0.33	0.86	0.3357	0.7377	1.8708	22	19	41	581	746	757	949	3033	0.19	0.25	0.25	0.31	0.56	0.8865	0.263	0.7792	1.967	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14963	17543	5644	9546	12165	15302	13991	13605	7321	9565	14343	18150	12489	2662	8797	9341	13030	10302	10654	14239	8825	10285	7864	18025	9853	6183	5966	14831	9005	12094	8760	12916	5895	7712	9702	7660	5547	4198	6017	6326	7538	2357	16568	6451	6965	13893	7733	11923	7594	9508	3638	2967	7533	10058	8965	10406	2374	2593	2771	3324	13061	2847	6230	3624
GCF_000002775.5	NC_037294	NC_037294.2	Populus trichocarpa isolate Nisqually-1 chromosome 10; P.trichocarpa_v4.1; whole genome shotgun sequence.	7491085	7441049	3928184	3908763	30000	22799081	0.33	0.33	0.17	0.17	0.34	0.943	0.0058	0.9942	1.9281	1085	1124	2209	2740796	3169032	1686581	1838664	0	9435073	0.28	0.33	0.18	0.2	0.39	0.9125	0.1556	0.8604	1.9528	44164	953	1006	1959	772808	737150	538217	643286	2691461	0.29	0.28	0.2	0.24	0.44	0.873	0.299	0.7584	1.9538	0	1125864	1482937	646588	692471	0	3947860	0.27	0.4	0.16	0.17	0.33	0.8621	0.3436	0.7259	1.8769	0	92	94	186	57927	62424	36513	39527	196391	0.29	0.3	0.19	0.21	0	0.4	0.8766	0.2732	0.7764	1.9378	0	74614	81161	39513	42779	238067	0.28	0.39	0.16	0.17	0	0.34	0.8593	0.358	0.7205	1.8725	20	9	29	390	533	524	693	2140	0.18	0.25	0.24	0.32	0.57	0.8951	0.2967	0.7484	1.9637	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	23331	26699	8654	14605	18496	22973	20541	21361	11637	15292	21741	27287	18951	4285	13282	14244	19436	15407	16477	21753	14076	15133	12129	26423	15918	9558	9370	22730	14070	18581	13670	19998	9087	12300	15200	11749	8671	6611	9420	9572	11899	3496	25483	9934	11198	20415	11508	18716	11483	14475	5694	4309	11725	14850	14225	15925	4168	4155	4294	5202	20036	4979	10007	5329
GCF_000002775.5	NC_037295	NC_037295.2	Populus trichocarpa isolate Nisqually-1 chromosome 11; P.trichocarpa_v4.1; whole genome shotgun sequence.	6392890	6364235	3237853	3213793	80000	19288771	0.33	0.33	0.17	0.17	0.33	0.939	0.006	0.994	1.9188	681	656	1337	2248074	2465148	1298022	1388312	10000	7409556	0.29	0.33	0.18	0.2	0.38	0.9103	0.1538	0.8624	1.9488	150588	590	593	1183	490987	474122	334362	395424	1694895	0.29	0.28	0.19	0.24	0.43	0.8738	0.2853	0.7677	1.9553	1	894449	1080982	485844	511713	0	2972988	0.27	0.4	0.16	0.17	0.33	0.8615	0.3309	0.735	1.8748	0	62	46	108	29337	30735	18106	20165	98343	0.3	0.3	0.19	0.21	0	0.4	0.872	0.3071	0.7549	1.9305	0	110881	115989	54523	56303	337696	0.29	0.39	0.16	0.17	0	0.33	0.8629	0.3071	0.7566	1.8708	21	6	27	388	444	511	634	1977	0.2	0.22	0.26	0.32	0.58	0.8842	0.2428	0.7913	1.9641	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14724	16489	5366	9263	11323	13593	12412	13668	7182	10212	14694	17273	12408	2439	8564	9296	12404	9241	10645	14339	8758	9057	7858	16777	9558	5841	6295	15022	9283	11610	8524	13282	5678	8350	9932	7005	5292	3736	5793	5667	7493	2077	15987	5851	6992	12682	6709	11623	7636	9264	3459	2290	8030	9135	8783	9882	2759	2443	2399	3021	13214	3389	6082	3241
GCF_000002775.5	NC_037296	NC_037296.2	Populus trichocarpa isolate Nisqually-1 chromosome 12; P.trichocarpa_v4.1; whole genome shotgun sequence.	5161506	5150520	2613923	2613101	50000	15589050	0.33	0.33	0.17	0.17	0.34	0.9372	0.0012	0.9988	1.9198	614	571	1185	1805567	2023922	1064803	1153490	0	6047782	0.28	0.33	0.18	0.2	0.39	0.9101	0.1603	0.8566	1.949	187515	543	492	1035	425064	404164	290365	347468	1467061	0.29	0.27	0.19	0.24	0.44	0.8723	0.3093	0.7517	1.9514	0	722614	907306	396773	424876	0	2451569	0.27	0.4	0.16	0.17	0.33	0.8603	0.3557	0.718	1.8701	0	56	61	117	35488	39033	22116	24363	121000	0.29	0.3	0.19	0.22	0	0.41	0.8791	0.2697	0.7799	1.9398	97	98481	101227	53217	54064	306989	0.28	0.39	0.16	0.17	0	0.34	0.8603	0.3378	0.7358	1.873	16	14	30	422	509	579	703	2213	0.19	0.23	0.26	0.32	0.58	0.8788	0.2438	0.7921	1.9621	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12664	14900	4667	7874	9701	12652	10929	11601	6466	8128	12906	15112	10575	2125	7650	8097	10764	8261	8815	11684	7629	8327	7113	14723	8597	5081	5192	12955	7491	10060	7262	11390	4776	6814	8381	6158	4567	3412	4804	4909	6389	1800	13857	5105	5833	10887	6287	10197	6430	8110	2997	2150	6696	7976	7626	8640	2227	2145	2220	2601	11208	2682	5469	2807
GCF_000002775.5	NC_037297	NC_037297.2	Populus trichocarpa isolate Nisqually-1 chromosome 13; P.trichocarpa_v4.1; whole genome shotgun sequence.	5227467	5218022	2610233	2609895	40000	15705617	0.33	0.33	0.17	0.17	0.33	0.9419	0.001	0.999	1.917	659	662	1321	1887245	2155189	1099910	1209222	10000	6361566	0.29	0.33	0.18	0.2	0.38	0.9097	0.1608	0.8562	1.9481	53786	570	581	1151	463816	442390	312985	377759	1596950	0.29	0.28	0.19	0.24	0.43	0.8717	0.3017	0.7568	1.9517	0	816960	1040565	448046	486985	10000	2802556	0.27	0.4	0.16	0.17	0.33	0.8622	0.3416	0.7276	1.8735	0	63	51	114	28336	31103	18067	19579	97085	0.29	0.31	0.19	0.21	0	0.4	0.8788	0.2701	0.7793	1.9338	225	98540	105104	49281	50795	303720	0.28	0.39	0.16	0.17	0	0.32	0.8615	0.3322	0.7422	1.8591	17	17	34	542	624	621	766	2553	0.21	0.24	0.24	0.3	0.54	0.8904	0.2038	0.8229	1.9777	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13849	16070	5368	8862	11020	13653	12636	12861	6625	8936	13758	16881	11313	2192	8143	8437	11871	9092	9666	13028	8093	8987	7092	16356	9098	5442	5551	13796	8457	10888	8106	12325	5198	7451	9178	6609	4927	3576	5340	5431	6773	1882	15688	5635	6429	12350	6702	10970	6881	8899	3024	2347	7357	8625	8010	9172	2387	2186	2338	2925	12123	2883	5788	3164
GCF_000002775.5	NC_037298	NC_037298.2	Populus trichocarpa isolate Nisqually-1 chromosome 14; P.trichocarpa_v4.1; whole genome shotgun sequence.	5854147	5842316	3060856	3034390	10000	17801709	0.33	0.33	0.17	0.17	0.34	0.9445	0.0054	0.9947	1.927	809	787	1596	1986765	2277297	1219367	1326794	0	6810223	0.28	0.33	0.19	0.2	0.39	0.9124	0.1517	0.8637	1.9537	16015	720	684	1404	553787	532904	391932	462613	1941236	0.29	0.28	0.2	0.24	0.44	0.8731	0.3005	0.7572	1.9546	0	806079	1048565	460611	489256	0	2804511	0.27	0.4	0.16	0.17	0.33	0.8616	0.3471	0.7237	1.8742	0	62	59	121	39601	45626	24983	27384	137594	0.3	0.3	0.19	0.21	0	0.4	0.8758	0.296	0.7632	1.9315	116	77010	83660	39860	42894	243424	0.28	0.4	0.16	0.17	0	0.33	0.8576	0.343	0.7308	1.8652	9	12	21	300	375	382	480	1537	0.19	0.24	0.25	0.31	0.56	0.8875	0.2442	0.792	1.9701	1	21	22	7510	6616	8240	10234	32600	0.23	0.22	0.25	0.3	0	0.55	0.8958	0.1428	0.8684	1.9857	16755	19169	6205	10776	13412	16350	15024	14931	8541	11100	15898	19487	13475	3099	9631	10264	14321	11114	11802	15661	10234	10968	9094	19610	11242	6797	6710	16496	10090	13290	9543	14561	6427	8625	10744	8566	6385	4853	6737	6969	8835	2798	18165	7063	8121	14883	8099	13179	8232	10618	4299	3244	8546	11002	9758	11688	2843	2942	3156	3797	14395	3426	6992	4009
GCF_000002775.5	NC_037299	NC_037299.2	Populus trichocarpa isolate Nisqually-1 chromosome 15; P.trichocarpa_v4.1; whole genome shotgun sequence.	5059864	5057408	2560133	2554340	0	15231745	0.33	0.33	0.17	0.17	0.34	0.94	0.0014	0.9986	1.9207	659	567	1226	1692053	1935258	998428	1103193	0	5728932	0.29	0.33	0.18	0.2	0.38	0.9108	0.1617	0.8552	1.9487	86469	579	497	1076	440121	418588	298322	364362	1521393	0.29	0.28	0.19	0.24	0.43	0.8714	0.3094	0.7518	1.9513	0	714624	923294	398416	432479	0	2468813	0.27	0.4	0.16	0.17	0.33	0.8604	0.3575	0.7168	1.8693	0	61	55	116	33920	36874	21034	21610	113438	0.29	0.31	0.19	0.2	0	0.39	0.8749	0.2722	0.7793	1.932	69	67807	75393	37429	39972	220601	0.27	0.4	0.16	0.17	0	0.33	0.8556	0.3423	0.7291	1.8602	13	7	20	286	347	381	465	1479	0.19	0.23	0.26	0.32	0.57	0.8801	0.2791	0.768	1.9592	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13285	15498	4907	8406	10387	13388	11904	11954	6273	8590	13013	15689	10569	2270	7721	7882	10961	8820	9148	12351	7890	8732	6858	15431	8869	5154	5286	13062	7958	10467	7577	11450	4921	6970	8566	6436	4646	3594	4979	5184	6615	1924	14595	5428	6028	11659	6358	10819	6576	8299	3125	2335	6934	8349	8097	8579	2342	2298	2246	2851	11460	2788	5792	3005
GCF_000002775.5	NC_037300	NC_037300.2	Populus trichocarpa isolate Nisqually-1 chromosome 16; P.trichocarpa_v4.1; whole genome shotgun sequence.	4856582	4845826	2468478	2448930	0	14619816	0.33	0.33	0.17	0.17	0.34	0.941	0.0051	0.9949	1.9213	577	563	1140	1451222	1652010	863839	948362	0	4915433	0.29	0.33	0.18	0.2	0.39	0.9107	0.1596	0.8572	1.9504	43580	491	521	1012	394836	378884	272288	327622	1373630	0.29	0.28	0.19	0.24	0.43	0.8731	0.3026	0.7563	1.9523	0	609289	775750	336156	364425	0	2085620	0.27	0.4	0.16	0.17	0.33	0.8595	0.3604	0.7151	1.87	81560	64	34	98	30383	33098	18843	20347	102671	0.29	0.32	0.19	0.21	0	0.39	0.8745	0.2918	0.7673	1.9159	0	57229	60493	29351	29458	176531	0.29	0.39	0.16	0.17	0	0.33	0.8593	0.3198	0.7468	1.8655	14	6	20	305	341	360	471	1477	0.21	0.23	0.24	0.32	0.56	0.8799	0.2242	0.8071	1.9728	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	11702	13961	4412	7359	9155	11882	10715	10942	5774	7694	11501	14253	9560	2140	6985	7373	10207	8037	8412	11338	7101	7683	6135	13721	7880	4909	4803	11853	7336	9334	6964	10422	4729	6271	7483	5871	4489	3230	4550	4822	5934	1768	13107	4949	5475	10413	5969	9394	6141	7522	2901	2207	6146	7431	7134	7983	1912	2128	2161	2568	10377	2410	4781	2688
GCF_000002775.5	NC_037301	NC_037301.2	Populus trichocarpa isolate Nisqually-1 chromosome 17; P.trichocarpa_v4.1; whole genome shotgun sequence.	5027820	5015203	2564720	2562012	20000	15189755	0.33	0.33	0.17	0.17	0.34	0.9379	0.0018	0.9982	1.9222	686	623	1309	2007604	2214590	1166150	1254232	30000	6672576	0.28	0.31	0.19	0.21	0.4	0.9101	0.1443	0.8708	1.9531	229859	539	486	1025	413361	397984	279425	338612	1429382	0.29	0.28	0.19	0.24	0.43	0.8719	0.3035	0.7561	1.9518	132	749453	919664	409866	438033	0	2517016	0.27	0.4	0.16	0.17	0.33	0.8614	0.3417	0.7275	1.8732	34316	56	40	96	28731	30432	18121	19043	96327	0.29	0.31	0.19	0.2	0	0.4	0.8714	0.2766	0.7762	1.933	89	133279	136780	69922	71199	411180	0.28	0.39	0.16	0.17	0	0.33	0.8635	0.3474	0.7268	1.8722	6	5	11	163	196	203	269	831	0.2	0.24	0.24	0.32	0.57	0.8871	0.2472	0.786	1.9699	78	85	163	4452	4118	5310	5518	19398	0.23	0.21	0.27	0.28	0	0.56	0.9089	0.0627	0.9399	1.9885	12611	14724	4563	7797	9586	12289	11058	11553	5773	7967	12228	15019	10051	2004	7322	7772	10513	8115	8627	11719	7383	8159	6246	14863	7926	4795	4996	12984	7738	9631	7385	11332	4781	6743	7856	6006	4302	3275	4915	4640	6296	1743	13682	4922	5916	10806	6022	9663	6525	7956	2701	1970	6466	7833	7386	8454	2048	2024	1986	2638	10686	2470	4884	2799
GCF_000002775.5	NC_037302	NC_037302.2	Populus trichocarpa isolate Nisqually-1 chromosome 18; P.trichocarpa_v4.1; whole genome shotgun sequence.	5414486	5401597	2719675	2698245	30000	16264003	0.33	0.33	0.17	0.17	0.33	0.9412	0.0051	0.9949	1.9178	588	629	1217	1909963	2169469	1121373	1224150	0	6424955	0.29	0.33	0.18	0.2	0.38	0.9112	0.1615	0.8554	1.949	88717	534	566	1100	460844	445151	317070	379992	1603057	0.29	0.28	0.19	0.24	0.43	0.8725	0.3023	0.7563	1.9527	0	756254	970680	416486	451031	0	2594451	0.27	0.4	0.16	0.17	0.33	0.8601	0.3521	0.7208	1.8704	0	41	51	92	25112	27108	15335	16254	83809	0.29	0.31	0.19	0.21	0	0.39	0.8708	0.3308	0.7451	1.9125	88	113426	116453	59945	62124	351948	0.28	0.39	0.15	0.17	0	0.32	0.859	0.3325	0.7365	1.8669	7	10	17	259	302	321	394	1276	0.2	0.24	0.25	0.31	0.56	0.8984	0.211	0.8145	1.9749	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14016	15619	5222	8618	10898	13115	11861	12801	6957	9664	13089	16014	11395	2455	8009	8197	11697	8931	9800	12992	8370	8827	7262	15532	9337	5451	5626	14183	8431	11284	8117	11969	5489	7656	9073	6644	5051	3846	5445	5446	7101	1846	15132	5556	6862	12227	6604	11191	7304	9175	3328	2525	7245	8995	7997	9095	2869	2255	2456	2952	12346	3282	6779	3084
GCF_000002775.5	NC_037303	NC_037303.2	Populus trichocarpa isolate Nisqually-1 chromosome 19; P.trichocarpa_v4.1; whole genome shotgun sequence.	5180942	5174037	2623778	2634898	10000	15623655	0.33	0.33	0.17	0.17	0.34	0.9332	0.0028	0.9972	1.9214	507	496	1003	2213504	2400548	1223387	1301679	20000	7159118	0.29	0.33	0.18	0.2	0.38	0.9101	0.1505	0.8651	1.9446	447359	454	426	880	371662	352148	249718	297839	1271367	0.29	0.28	0.2	0.24	0.43	0.8743	0.2924	0.7637	1.9531	0	874509	1031988	459722	486798	0	2853017	0.27	0.4	0.16	0.17	0.33	0.8624	0.3279	0.7372	1.87	112419	44	54	98	26223	28556	16233	17316	88328	0.3	0.3	0.19	0.21	0	0.4	0.8732	0.3033	0.7583	1.9296	0	161675	162353	79337	78479	481844	0.29	0.39	0.16	0.17	0	0.33	0.858	0.3345	0.7407	1.8621	1	7	8	124	137	145	173	579	0.21	0.23	0.25	0.31	0.56	0.8936	0.1911	0.8315	1.9766	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	10979	12413	4061	6885	8629	10842	9098	10264	5332	6946	11104	13432	9201	1926	6466	7236	9599	6944	7844	10294	6496	6904	5723	12687	6995	4316	4680	11186	7006	8907	6372	9827	4240	6024	7399	5233	3798	2827	4216	4210	5791	1463	12358	4391	5405	9181	5177	8996	5815	7028	2495	1882	6025	6663	6317	7496	1980	1748	1849	2221	9868	2485	4783	2684
NA	NC_009143	NC_009143.1	Populus trichocarpa chloroplast; complete genome.	49158	50283	29304	28288	0	157033	0.31	0.32	0.19	0.18	0.37	0.9348	0.029	0.9715	1.948	57	86	143	34467	33832	20206	23851	0	112356	0.29	0.29	0.19	0.23	0.42	0.8942	0.2142	0.8145	1.9476	57	35	58	93	25176	25425	14146	16328	81075	0.31	0.31	0.17	0.21	0.38	0.8876	0.2617	0.785	1.9236	57	2438	2279	1088	1334	0	7139	0.39	0.3	0.13	0.18	0.31	0.8666	0.3638	0.6708	1.8109	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	20	37	610	694	666	817	2787	0.22	0.25	0.24	0.3	0.53	0.877	0.2294	0.8098	1.9666	4	4	8	2326	1700	2134	2888	9048	0.26	0.2	0.23	0.31	0	0.53	0.9101	0.2875	0.7511	1.9783	646	402	546	524	389	364	609	1141	351	480	1040	1081	424	134	418	309	591	208	531	1027	187	571	198	864	211	247	416	577	799	723	443	601	179	732	448	231	156	206	172	216	132	114	1104	194	92	508	327	520	225	495	185	145	875	436	186	299	28	115	155	332	726	45	25	369