GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_001633185.1	NC_044904	NC_044904.1	Quercus lobata isolate SW786 chromosome 1; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	17753477	17856090	10009478	9986175	78537	55683757	0.32	0.32	0.18	0.18	0.36	0.9416	0.004	0.996	1.9416	1484	1294	2778	3968828	4494889	2297974	2530021	8691	13300403	0.29	0.32	0.18	0.2	0.38	0.9087	0.1663	0.8529	1.9434	11324	1285	1126	2411	901767	854678	626996	736708	0	3120149	0.29	0.28	0.19	0.24	0.43	0.8738	0.2972	0.76	1.9512	4	2102430	2505283	1118735	1205058	5691	6937197	0.28	0.4	0.15	0.16	0.32	0.8606	0.3131	0.7477	1.8641	0	129	130	259	74935	82175	46670	49622	253402	0.29	0.31	0.2	0.21	0.4	0.8622	0.3603	0.7199	1.9184	0	164759	207471	87308	99272	1000	559810	0.28	0.41	0.14	0.16	0.31	0.8604	0.3574	0.7168	1.8426	29	30	59	894	1047	1104	1340	4385	0.2	0.24	0.25	0.31	0.56	0.8925	0.2107	0.8156	1.9741	10	3	13	3737	3487	3431	4254	14909	0.25	0.24	0.23	0.28	0	0.51	0.9094	0.1256	0.8846	1.9934	26961	31561	10917	16822	19674	27149	22288	25303	13476	18428	26918	30920	21361	5136	15385	17182	21467	18729	19570	25137	14301	17150	14694	29615	16952	11881	12329	26977	16903	20077	15429	22691	11032	15328	17346	14893	10883	8423	11536	12032	13022	4098	29600	11415	11814	22216	13371	20158	13452	16788	6779	5073	14436	16511	16405	18645	4961	4934	5305	5924	24424	5956	10809	6097
GCF_001633185.1	NC_044905	NC_044905.1	Quercus lobata isolate SW786 chromosome 2; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	33529709	33570303	18591145	18572954	172437	104436548	0.32	0.32	0.18	0.18	0.36	0.943	0.0011	0.9989	1.9389	2730	2673	5403	7681614	8685872	4394875	4872960	11953	25647274	0.29	0.32	0.18	0.2	0.38	0.9086	0.166	0.8526	1.943	34998	2461	2396	4857	1827846	1735418	1263481	1495400	0	6322145	0.29	0.28	0.2	0.24	0.43	0.8727	0.301	0.7572	1.9512	29	4271139	5094322	2241589	2434509	9953	14051512	0.28	0.4	0.15	0.16	0.32	0.8609	0.3151	0.7461	1.8633	0	199	212	411	93656	104417	59030	63106	320209	0.29	0.31	0.19	0.21	0.4	0.8633	0.3516	0.7239	1.9228	0	187134	238659	91704	109556	0	627053	0.28	0.41	0.14	0.17	0.31	0.8584	0.3648	0.7119	1.8425	40	43	83	1199	1442	1562	1959	6162	0.19	0.23	0.25	0.32	0.57	0.8786	0.2636	0.7782	1.9619	3	2	5	1425	1283	1274	1552	5534	0.26	0.24	0.23	0.27	0	0.5	0.9027	0.1299	0.8808	1.9945	55110	65691	21633	34247	40479	55549	45571	50954	27400	37188	53752	63258	42497	10086	31359	35190	43587	38543	38946	51375	29244	35350	30553	59933	34581	23819	24070	56318	33989	40629	30840	46673	22001	30952	35213	30592	21686	17029	23466	24144	26089	8278	60628	22402	24053	45720	27536	40320	27555	34433	12930	10228	29328	32947	32392	37504	9597	9752	9438	11767	49217	12141	21707	11937
GCF_001633185.1	NC_044906	NC_044906.1	Quercus lobata isolate SW786 chromosome 3; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	24055864	24103886	13098759	13085493	207538	74551540	0.32	0.32	0.18	0.18	0.35	0.9412	0.0015	0.9985	1.9346	1892	1781	3673	5489438	6126819	3062921	3391827	15178	18086183	0.3	0.33	0.18	0.2	0.38	0.9074	0.1674	0.8514	1.9392	12387	1589	1556	3145	1233857	1173001	810923	973902	0	4191683	0.29	0.28	0.19	0.24	0.43	0.8725	0.3013	0.758	1.9478	4	2736212	3215686	1418984	1527965	8008	8906855	0.29	0.4	0.15	0.16	0.32	0.86	0.3111	0.7494	1.8614	0	259	185	444	108966	116175	66300	73587	365028	0.3	0.3	0.19	0.21	0.4	0.8628	0.3412	0.7308	1.9248	0	255647	315885	130137	147804	0	849473	0.28	0.41	0.14	0.16	0.31	0.8588	0.351	0.7229	1.845	24	24	48	698	844	894	1143	3579	0.19	0.24	0.25	0.32	0.57	0.8842	0.2524	0.7812	1.9683	0	1	1	28	30	29	32	119	0.24	0.25	0.24	0.27	0	0.51	0.9153	0.0837	0.9198	1.9982	35984	43629	14501	23169	25962	36467	28833	36002	17252	24300	38530	44196	27839	6277	20832	23747	28760	24571	26128	36086	18638	22268	19308	41121	21133	14754	16525	39252	23986	26940	20355	32500	13635	22152	23339	19854	13250	10494	15133	14667	16661	4833	43114	14331	16114	29840	17495	27405	19728	23144	7989	6051	21065	20729	20361	23633	6339	6066	5870	7774	32997	7754	14449	7526
GCF_001633185.1	NC_044907	NC_044907.1	Quercus lobata isolate SW786 chromosome 4; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	31640594	31604119	17178449	17164859	206393	97794414	0.32	0.32	0.18	0.18	0.35	0.9397	0.001	0.999	1.9347	2048	2071	4119	6511105	7187880	3619336	3948540	21985	21288846	0.3	0.33	0.18	0.2	0.38	0.9076	0.1661	0.853	1.939	178388	1731	1760	3491	1383131	1323755	900709	1069702	0	4677297	0.3	0.28	0.19	0.23	0.42	0.8749	0.2916	0.7646	1.9469	5	3146429	3602891	1643256	1737712	18965	10149253	0.29	0.39	0.15	0.16	0.32	0.8612	0.3049	0.7537	1.8614	0	273	263	536	140513	157345	86534	92324	476716	0.29	0.31	0.19	0.21	0.4	0.8614	0.3501	0.7259	1.9199	0	304384	392218	154510	176149	0	1027261	0.28	0.41	0.14	0.16	0.31	0.8607	0.3647	0.7117	1.8459	15	22	37	560	640	681	862	2743	0.2	0.23	0.25	0.31	0.56	0.8934	0.2423	0.7899	1.9705	0	2	2	871	738	867	1071	3547	0.25	0.22	0.24	0.29	0	0.53	0.9053	0.1586	0.8547	1.9911	39983	47655	17014	25786	28142	39829	30322	41696	19201	27812	44770	48171	31898	7210	23615	25923	32150	26854	29299	41540	19632	25044	21340	45590	22612	16124	19625	44596	27450	29775	22861	36574	15314	24952	26753	21826	14763	11606	16874	15489	17510	5382	49632	15255	18017	32851	19054	29656	21761	26722	8576	6374	25367	23440	22696	27165	7179	6676	6498	8744	37418	8680	14710	8556
GCF_001633185.1	NC_044908	NC_044908.1	Quercus lobata isolate SW786 chromosome 5; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	28916609	28909982	15746135	15739827	166483	89479036	0.32	0.32	0.18	0.18	0.35	0.9409	0.0003	0.9997	1.9354	2008	2145	4153	5774961	6449972	3239558	3582164	9831	19056486	0.29	0.32	0.18	0.2	0.38	0.9078	0.1649	0.8541	1.942	13262	1718	1712	3430	1331762	1263092	882112	1054260	0	4531226	0.29	0.28	0.19	0.24	0.43	0.8726	0.2933	0.7631	1.9489	0	3035119	3540094	1583364	1689014	7000	9854591	0.29	0.4	0.15	0.16	0.31	0.8596	0.3076	0.7512	1.8605	0	257	226	483	121634	132882	73947	82749	411212	0.29	0.31	0.19	0.21	0.4	0.8615	0.3621	0.7176	1.9196	973	270350	342549	135135	158460	0	906494	0.28	0.41	0.14	0.17	0.31	0.8593	0.3662	0.7117	1.8455	20	31	51	742	927	932	1183	3784	0.2	0.24	0.25	0.31	0.56	0.8887	0.2454	0.7873	1.9709	0	166	166	4619	4538	5147	5439	19743	0.23	0.23	0.26	0.28	0	0.54	0.9106	0.0762	0.9281	1.9933	39621	47251	16034	24656	28083	37989	30612	38964	18783	28021	40588	46829	30353	6967	22400	24857	30361	26822	28695	38194	20167	23685	21224	42966	23404	16465	18472	41640	25502	29383	22492	34558	15312	23792	25708	21472	14666	11250	17023	16175	18017	5440	45740	15148	17604	31675	19207	29501	20731	24714	8522	6594	22887	22477	22571	25280	7725	6516	6559	8511	36430	9280	15407	8495
GCF_001633185.1	NC_044909	NC_044909.1	Quercus lobata isolate SW786 chromosome 6; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	17360522	17365374	9590348	9610260	94637	54021141	0.32	0.32	0.18	0.18	0.36	0.9425	0.0012	0.9988	1.9385	1529	1445	2974	4150695	4691687	2396081	2654092	3645	13896200	0.29	0.32	0.18	0.2	0.38	0.9085	0.1703	0.8499	1.9439	14978	1365	1305	2670	1004111	943247	694344	826878	0	3468580	0.29	0.27	0.2	0.24	0.43	0.8729	0.2994	0.7582	1.9518	0	2301923	2747175	1219747	1317920	3645	7590410	0.28	0.4	0.15	0.17	0.32	0.8605	0.3196	0.7432	1.8636	0	120	108	228	51589	58657	31833	35424	177503	0.29	0.31	0.19	0.21	0.4	0.8608	0.3471	0.7268	1.9197	0	107892	137840	56223	63297	0	365252	0.28	0.41	0.14	0.17	0.31	0.8589	0.3676	0.7092	1.8441	29	23	52	720	910	968	1220	3818	0.19	0.24	0.25	0.32	0.57	0.8805	0.2556	0.7844	1.9625	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30051	36862	11903	18735	22568	30724	25370	28371	15130	20390	28918	34629	22974	5792	16984	19018	23504	21094	21456	27288	16372	19315	16472	33412	19218	13055	13043	30237	18419	22828	17331	24832	12256	16612	19296	17081	11964	9402	12800	13344	14334	4636	33473	12656	13124	24821	15358	22844	14969	18474	7286	5424	15583	17865	17943	20692	5216	5419	5466	6772	26671	6349	11775	6650
GCF_001633185.1	NC_044910	NC_044910.1	Quercus lobata isolate SW786 chromosome 7; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	15837365	15778755	8637816	8663204	102949	49020089	0.32	0.32	0.18	0.18	0.35	0.9405	0.0033	0.9967	1.9363	1307	1384	2691	3829032	4334863	2195914	2421615	10173	12791597	0.29	0.33	0.18	0.2	0.38	0.9087	0.1639	0.854	1.943	44931	1161	1245	2406	882435	845625	607873	721547	0	3057480	0.29	0.28	0.19	0.24	0.44	0.8729	0.3013	0.7574	1.9507	4	1877112	2258749	994461	1073039	9173	6212534	0.28	0.4	0.15	0.17	0.32	0.8605	0.3229	0.7409	1.8628	0	113	106	219	56952	62790	34875	38186	192803	0.29	0.31	0.19	0.21	0.4	0.8605	0.3446	0.7268	1.9243	0	157638	187641	79789	86797	1000	512865	0.28	0.41	0.14	0.16	0.31	0.8588	0.3399	0.7285	1.8479	23	23	46	647	820	848	1114	3429	0.19	0.24	0.25	0.33	0.57	0.8872	0.2633	0.7758	1.9656	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	25732	31428	10561	16577	18768	27420	21735	25859	13259	17651	26645	31324	20593	5042	15457	17008	21301	18291	18919	25187	13709	17111	14906	29490	16245	11389	11417	27749	16232	19138	15201	23803	10801	15138	16783	14960	10116	8282	10656	11417	12545	4102	29735	10695	11815	22119	13728	19554	13757	16498	6518	4812	14484	15788	15507	17460	4227	4756	4784	5848	23497	5281	9903	5734
GCF_001633185.1	NC_044911	NC_044911.1	Quercus lobata isolate SW786 chromosome 8; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	21055868	21044163	11605522	11594708	156572	65456833	0.32	0.32	0.18	0.18	0.35	0.9408	0.0007	0.9993	1.9375	1729	1848	3577	4795694	5434632	2763347	3049153	6267	16049093	0.29	0.32	0.18	0.2	0.38	0.9083	0.1653	0.8533	1.9436	28313	1459	1674	3133	1176619	1123163	808882	955991	0	4064655	0.29	0.28	0.19	0.24	0.43	0.8737	0.295	0.7617	1.951	0	2557166	3052830	1350744	1456635	5267	8422642	0.29	0.4	0.15	0.16	0.32	0.8611	0.312	0.748	1.8631	17040	185	136	321	67671	76938	42308	47032	233949	0.29	0.31	0.19	0.21	0.4	0.8635	0.3513	0.7241	1.923	312	139816	180783	73159	83323	0	477081	0.28	0.41	0.14	0.17	0.31	0.862	0.3615	0.7146	1.8462	30	30	60	842	1028	1122	1420	4412	0.19	0.23	0.25	0.32	0.58	0.8871	0.2534	0.7836	1.9639	44	0	44	1175	1126	1435	1500	5236	0.22	0.22	0.27	0.29	0	0.56	0.9089	0.0471	0.9544	1.9887	34928	40960	14310	22249	26097	35312	28712	33799	17620	24159	35585	41039	27405	6405	20037	22811	27860	24493	25000	33447	18515	22440	19524	39313	21215	15160	16120	36722	22219	25873	19995	31019	14158	20450	22694	19878	13487	10947	14934	15209	16439	5386	39241	14702	15554	28890	17670	25748	17810	21974	8116	6327	20143	20368	20988	23953	5911	6197	6241	7874	31826	6985	13174	7664
GCF_001633185.1	NC_044912	NC_044912.1	Quercus lobata isolate SW786 chromosome 9; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	17777899	17782802	9678465	9652631	120295	55012092	0.32	0.32	0.18	0.18	0.35	0.941	0.0015	0.9985	1.9349	1484	1418	2902	4216174	4738237	2361938	2618747	8000	13943096	0.3	0.33	0.18	0.2	0.37	0.9079	0.1625	0.8555	1.9392	23267	1312	1243	2555	980458	934400	647123	773895	13	3335889	0.3	0.28	0.19	0.24	0.43	0.8734	0.2982	0.7596	1.9482	5	2189464	2593335	1137257	1228020	5987	7154063	0.29	0.4	0.15	0.16	0.32	0.8606	0.3107	0.7496	1.8615	0	133	149	282	69467	77086	41997	46844	235394	0.3	0.31	0.19	0.21	0.4	0.8626	0.3452	0.7289	1.9229	0	141122	177998	70638	78783	0	468541	0.28	0.41	0.15	0.16	0.31	0.8583	0.3438	0.7278	1.8464	15	16	31	453	542	589	707	2291	0.19	0.24	0.26	0.31	0.57	0.8707	0.2752	0.7698	1.9611	0	1	1	30	29	29	31	119	0.25	0.24	0.24	0.26	0	0.5	0.8987	0.0503	0.9511	1.9994	28624	34226	11381	17866	20602	27993	22286	28688	13738	19482	31517	34101	23186	5158	17366	18577	23416	19139	20167	28816	14505	18270	15378	31808	16678	11833	13461	30898	18924	21924	16245	25940	10468	16934	18367	15489	10695	8461	12101	11941	13329	3784	34212	11071	13112	23483	14703	21861	15830	18399	6534	4943	16723	16820	16340	19416	5541	4633	4713	6033	26238	6765	12017	5931
GCF_001633185.1	NC_044913	NC_044913.1	Quercus lobata isolate SW786 chromosome 10; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	21422223	21415159	11720985	11710727	153918	66423012	0.32	0.32	0.18	0.18	0.35	0.9408	0.0006	0.9994	1.9361	1595	1539	3134	4800028	5398364	2705989	2982016	8000	15894397	0.3	0.33	0.18	0.2	0.38	0.9082	0.1644	0.8538	1.9402	40372	1383	1340	2723	1049972	999351	695372	841946	0	3586641	0.29	0.28	0.19	0.24	0.43	0.873	0.2981	0.7597	1.9489	5	2560766	3018462	1347295	1448293	7000	8381816	0.29	0.4	0.15	0.17	0.32	0.862	0.3097	0.7499	1.865	0	188	166	354	97814	107412	59771	64101	329098	0.3	0.31	0.19	0.2	0.39	0.8658	0.3138	0.7498	1.9255	0	225268	279395	119174	126746	1000	751583	0.28	0.41	0.15	0.16	0.31	0.8585	0.3622	0.7139	1.8451	16	20	36	546	650	658	858	2712	0.2	0.24	0.24	0.32	0.56	0.8791	0.2693	0.7719	1.9656	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30948	36634	13044	19520	22771	31059	25077	31254	14567	21459	32382	37149	24424	5428	18480	19344	24338	21923	21718	30048	15926	19602	16506	35509	17754	12264	14276	32951	19662	22953	17253	26849	11799	18542	20024	16938	11659	9123	12602	12685	14233	4384	36410	12243	13834	25547	15464	23456	16709	19750	6968	5227	18134	18340	18164	20585	5464	5225	5430	6702	27959	6725	12244	6618
GCF_001633185.1	NC_044914	NC_044914.1	Quercus lobata isolate SW786 chromosome 11; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	18705753	18661989	10131047	10110412	120283	57729484	0.32	0.32	0.18	0.18	0.35	0.9393	0.0022	0.9978	1.9342	1381	1431	2812	4206176	4713477	2375601	2605667	7000	13907921	0.29	0.33	0.18	0.2	0.38	0.9081	0.1664	0.8526	1.9415	28353	1214	1231	2445	930394	895073	627979	749992	0	3203438	0.29	0.28	0.19	0.24	0.43	0.8738	0.2948	0.7618	1.9502	0	2244267	2606151	1177558	1241779	5000	7274755	0.29	0.4	0.15	0.16	0.32	0.8607	0.3076	0.7514	1.862	0	126	174	300	80560	91798	48887	53727	274972	0.3	0.31	0.18	0.21	0.39	0.8615	0.3533	0.7225	1.9191	0	171074	217105	86139	100911	1000	576229	0.28	0.42	0.14	0.16	0.3	0.8572	0.3637	0.7127	1.8406	21	10	31	426	574	565	709	2274	0.19	0.25	0.25	0.31	0.56	0.8884	0.2743	0.773	1.9667	2	4	6	1404	1283	1400	1744	5831	0.26	0.25	0.22	0.27	0	0.49	0.9051	0.1372	0.8747	1.9853	27419	32617	11453	18051	20201	28174	22895	27273	13451	19261	28719	32879	21479	4840	15742	17656	21791	19021	20235	27303	13990	17937	14907	31378	16194	11406	12284	29575	17945	20350	15748	24273	10965	16053	17667	15264	10612	8177	11601	11511	12545	4043	31917	11295	12264	23408	13764	19544	14701	17620	6238	4782	15589	16553	15769	18592	4787	4593	4668	6114	25133	6124	10794	5939
GCF_001633185.1	NC_044915	NC_044915.1	Quercus lobata isolate SW786 chromosome 12; ValleyOak3.0 Primary Assembly; whole genome shotgun sequence.	13860794	13922378	7630236	7641397	77257	43132062	0.32	0.32	0.18	0.18	0.35	0.9425	0.0029	0.9971	1.9373	1298	1190	2488	3588732	4079532	2066432	2299704	10000	12044400	0.29	0.33	0.18	0.2	0.38	0.9093	0.1628	0.8552	1.944	35109	1184	1087	2271	871298	827244	599892	715423	0	3013857	0.29	0.28	0.2	0.24	0.43	0.8725	0.3042	0.7556	1.9505	1	1931984	2334639	1019279	1113956	6000	6405858	0.28	0.4	0.15	0.17	0.32	0.8606	0.3209	0.742	1.8629	0	81	63	144	33093	35718	20072	22063	110946	0.3	0.3	0.19	0.21	0.4	0.8637	0.3558	0.7222	1.9202	2	83459	103490	43003	47246	0	277198	0.28	0.42	0.14	0.16	0.3	0.8585	0.3606	0.7145	1.8397	18	28	46	661	794	838	1067	3360	0.2	0.24	0.25	0.32	0.57	0.8842	0.2714	0.7708	1.962	1	0	1	32	24	32	31	119	0.27	0.2	0.27	0.26	0	0.53	0.8987	0.1587	0.8594	1.9905	25597	31268	10414	16110	19226	26293	21593	24160	13123	17629	25753	30114	20518	4900	15103	16390	21087	18225	18772	24133	14125	17298	14246	28815	16728	11332	11366	26988	16121	19326	14555	22006	10562	14491	16699	14364	10024	8010	10921	11259	12609	4104	29881	10753	11705	21820	13303	19555	13549	16177	6335	4759	13819	15660	15360	17538	4810	4721	4819	5690	23163	5730	10801	5436