GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_002994745.2	NC_037088	NC_037088.1	Rosa chinensis cultivar Old Blush chromosome 1; RchiOBHm-V2; whole genome shotgun sequence.	20973781	20985786	13262098	13268137	400	68490202	0.31	0.31	0.19	0.19	0.39	0.9456	0.0005	0.9995	1.9631	2648	2629	5277	5295725	6072611	3378997	3770706	18518039	0.28	0.32	0.19	0.21	0.4	0.9107	0.1738	0.8459	1.9555	117835	1989	2004	3993	1541708	1477716	1099642	1300289	5419355	0.29	0.27	0.2	0.24	0.44	0.8738	0.3017	0.7574	1.9505	5	1736586	2216084	1011894	1100662	6065226	0.27	0.4	0.16	0.17	0.33	0.86	0.3477	0.7232	1.8739	520	469	989	284326	315316	185324	209922	994888	0.29	0.3	0.18	0.22	0.41	0.8665	0.3359	0.7344	1.9315	0	401621	531448	229400	263982	1426451	0.26	0.41	0.15	0.18	0.33	0.8591	0.3826	0.699	1.8666	27	24	51	752	926	934	1169	3781	0.2	0.24	0.25	0.31	0.56	0.8893	0.2437	0.7897	1.9711	60	80	140	3920	3536	4431	4731	16618	0.24	0.21	0.27	0.28	0	0.55	0.893	0.085	0.9189	1.9907	45823	56406	17865	28996	33129	47667	36764	41861	24496	31998	44589	52992	35280	9371	27675	30772	36354	32090	34968	42313	29145	28710	28216	50380	30805	20501	19863	48659	28448	35869	27541	40433	20371	24999	29570	26932	18024	14347	20523	20879	23638	8401	49186	20111	22735	38222	22936	35743	24598	29153	13742	10208	23459	26132	27226	28642	8550	10129	11640	9869	40133	9931	20004	11634
GCF_002994745.2	NC_037089	NC_037089.1	Rosa chinensis cultivar Old Blush chromosome 2; RchiOBHm-V2; whole genome shotgun sequence.	27147065	27074791	17184474	17149099	900	88556329	0.31	0.31	0.19	0.19	0.39	0.9456	0.0024	0.9976	1.9633	3346	3541	6887	6620664	7636047	4290754	4787032	23334497	0.28	0.32	0.19	0.21	0.4	0.9111	0.1762	0.8441	1.9563	33749	2663	2817	5480	2072238	1974029	1508719	1785449	7340435	0.29	0.27	0.2	0.24	0.44	0.8734	0.3003	0.7579	1.9528	5	2312413	2989674	1350939	1468985	8122011	0.27	0.4	0.16	0.17	0.33	0.8596	0.3501	0.7213	1.8741	562	616	1178	313439	352575	208998	235858	1110870	0.29	0.3	0.19	0.22	0.41	0.8661	0.3425	0.7295	1.9311	11	458487	600600	270021	309810	1638918	0.26	0.41	0.15	0.18	0.33	0.859	0.3875	0.6954	1.8652	48	44	92	1348	1638	1702	2128	6816	0.2	0.24	0.25	0.31	0.56	0.8881	0.2326	0.8015	1.9698	0	1	1	28	27	30	34	119	0.24	0.23	0.25	0.29	0	0.54	0.887	0.0807	0.9233	1.9942	62057	77209	24226	39761	45882	67569	51869	55556	33669	43426	56399	71802	46188	12998	37127	41144	47937	44330	47735	55866	39294	39950	38397	69144	43714	28582	26282	63517	38093	48406	37744	52010	28690	33143	39342	37789	25196	20331	28875	30632	32597	11592	65675	28699	30219	52619	31340	47742	31933	38573	18893	14944	29359	35989	37012	38688	10687	13878	16868	13837	53227	12639	25415	15419
GCF_002994745.2	NC_037090	NC_037090.1	Rosa chinensis cultivar Old Blush chromosome 3; RchiOBHm-V2; whole genome shotgun sequence.	15232782	15250161	9633079	9621190	100	49737312	0.31	0.31	0.19	0.19	0.39	0.9487	0.0012	0.9988	1.9629	1941	1986	3927	3754975	4333882	2417823	2696227	13202907	0.28	0.32	0.19	0.21	0.4	0.9105	0.1745	0.8455	1.9571	16331	1549	1477	3026	1123113	1073041	814910	964043	3975107	0.28	0.27	0.2	0.24	0.44	0.8739	0.2996	0.7582	1.9533	0	1306174	1691671	763514	831213	4592572	0.27	0.4	0.16	0.17	0.33	0.8602	0.3493	0.7217	1.874	336	333	669	177306	200232	118965	133917	630420	0.29	0.31	0.19	0.22	0.41	0.8661	0.3435	0.7284	1.9325	0	249635	328081	144483	168229	890428	0.27	0.41	0.15	0.18	0.33	0.8598	0.3846	0.6974	1.8667	23	30	53	794	929	972	1227	3922	0.2	0.24	0.25	0.31	0.56	0.8895	0.2534	0.7839	1.9699	2	115	117	4496	4081	4893	5446	18916	0.24	0.21	0.27	0.28	0	0.55	0.8937	0.0853	0.9188	1.9907	33655	42384	13026	21759	24555	36679	28441	30711	18589	22839	31317	39239	25438	6887	20185	22350	26387	23754	25537	30644	20760	21542	20326	37827	23259	15754	13739	34675	20543	26339	20449	28642	15456	17721	20900	20395	13540	11130	15162	16499	17301	6288	35249	15315	16301	28491	17052	25838	17338	20952	10108	7919	16194	19878	20171	20834	5679	7315	8825	7572	28794	6714	13756	8313
GCF_002994745.2	NC_037091	NC_037091.1	Rosa chinensis cultivar Old Blush chromosome 4; RchiOBHm-V2; whole genome shotgun sequence.	20502422	20507355	13120583	13110764	200	67241324	0.3	0.3	0.2	0.19	0.39	0.9469	0.0005	0.9995	1.9649	2459	2392	4851	4847154	5572724	3122824	3474974	17017676	0.28	0.32	0.19	0.21	0.4	0.9113	0.1747	0.8454	1.9563	49314	1957	1914	3871	1460103	1391116	1057911	1253794	5162924	0.29	0.27	0.2	0.24	0.44	0.8736	0.301	0.757	1.9529	0	1748080	2243531	1021015	1105962	6118588	0.27	0.4	0.16	0.17	0.33	0.8598	0.3482	0.7228	1.8742	442	416	858	224144	249602	148532	170487	792765	0.29	0.3	0.19	0.23	0.41	0.8666	0.3423	0.729	1.9344	0	339656	438854	197948	220362	1196820	0.26	0.41	0.15	0.18	0.33	0.858	0.3936	0.6912	1.8635	25	29	54	776	964	985	1275	4000	0.19	0.24	0.25	0.32	0.57	0.8894	0.2677	0.7722	1.9654	0	2	2	62	58	60	62	242	0.26	0.24	0.25	0.26	0	0.5	0.9098	0.0487	0.9531	1.9985	43711	54821	16847	27686	32577	46795	36941	39835	23824	30411	40243	50707	33118	9049	25983	28737	34347	30959	33300	39461	27222	28029	26911	48957	29802	19755	18711	44563	26382	34376	26422	36050	19967	23351	27377	26563	17458	14099	19525	20951	22862	8329	46209	20453	21623	37089	21789	34027	22645	27299	13050	10160	20983	25645	26051	27702	7731	9612	11842	9471	37192	8889	18447	11021
GCF_002994745.2	NC_037092	NC_037092.1	Rosa chinensis cultivar Old Blush chromosome 5; RchiOBHm-V2; whole genome shotgun sequence.	27489511	27468363	17509300	17486022	600	89953796	0.31	0.31	0.19	0.19	0.39	0.9458	0.001	0.999	1.9642	3308	3348	6656	6586276	7529545	4215011	4685187	23016019	0.28	0.32	0.19	0.21	0.4	0.9108	0.1742	0.8457	1.9559	63043	2596	2645	5241	2005303	1913424	1428174	1688806	7035707	0.29	0.27	0.2	0.24	0.44	0.8742	0.2964	0.761	1.9519	54	2300502	2918397	1337424	1450304	8006627	0.27	0.4	0.16	0.17	0.33	0.86	0.3412	0.7272	1.8738	611	604	1215	328463	362760	216729	246710	1154662	0.29	0.3	0.19	0.22	0.41	0.8672	0.3371	0.7331	1.9338	0	427612	567469	247022	278780	1520883	0.26	0.41	0.15	0.18	0.33	0.8592	0.3823	0.699	1.866	49	46	95	1396	1686	1733	2174	6989	0.2	0.24	0.25	0.31	0.56	0.8846	0.2525	0.7845	1.9681	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	61035	74126	23053	38439	43761	61757	47801	54565	31451	41902	56342	69357	45099	12111	35740	40077	46896	41593	46103	55086	36708	37679	35746	65681	40563	27346	26013	62771	37173	46528	36161	50815	26668	32834	38264	35225	23398	19111	27635	27413	30596	10412	63208	26244	29186	50167	29429	46266	31314	36664	17229	13182	29575	34205	35231	37551	11123	12882	14660	13084	53107	12962	25421	15226
GCF_002994745.2	NC_037093	NC_037093.1	Rosa chinensis cultivar Old Blush chromosome 6; RchiOBHm-V2; whole genome shotgun sequence.	21274616	21236902	13575945	13555102	600	69643165	0.31	0.3	0.19	0.19	0.39	0.9464	0.0017	0.9983	1.9645	2652	2786	5438	5198013	5978219	3374072	3759224	18309528	0.28	0.32	0.19	0.21	0.4	0.9113	0.1752	0.8449	1.9572	26931	2150	2232	4382	1629988	1556655	1188159	1408956	5783758	0.28	0.27	0.2	0.24	0.45	0.8745	0.3012	0.7575	1.9528	9	1835089	2360928	1078167	1167631	6441815	0.27	0.4	0.16	0.17	0.33	0.8592	0.349	0.7219	1.8744	418	477	895	232776	262376	153952	174484	823588	0.29	0.3	0.18	0.22	0.41	0.8657	0.3436	0.7287	1.9307	11	346775	451426	204784	231408	1234393	0.26	0.41	0.15	0.18	0.33	0.8592	0.3906	0.6941	1.8653	34	40	74	1077	1334	1356	1704	5471	0.19	0.24	0.25	0.31	0.56	0.8794	0.2638	0.779	1.9634	2	0	2	57	51	63	67	238	0.24	0.21	0.26	0.28	0	0.55	0.8929	0.0864	0.9175	1.9922	48393	61619	18798	31151	36429	52967	41591	43947	26637	33465	45586	56853	36763	10152	29296	32320	38599	35133	37349	44026	30846	31330	30211	54559	33813	22044	19711	49992	29589	38315	28844	41240	22381	25017	30039	30223	19624	16139	22355	24425	25297	9278	51968	22714	24285	41450	24624	37771	25489	30219	15231	11790	23075	28806	29114	30436	8550	10918	13458	11015	41489	10016	21244	12464
GCF_002994745.2	NC_037094	NC_037094.1	Rosa chinensis cultivar Old Blush chromosome 7; RchiOBHm-V2; whole genome shotgun sequence.	21464959	21504621	13647055	13673665	500	70290800	0.31	0.31	0.19	0.19	0.39	0.9463	0.0019	0.9981	1.9639	2653	2568	5221	5321375	6077477	3415283	3808244	18622379	0.28	0.32	0.19	0.21	0.4	0.9113	0.175	0.8449	1.9564	51277	2136	2015	4151	1566948	1477743	1127520	1345083	5517294	0.29	0.27	0.2	0.24	0.44	0.8739	0.3019	0.7569	1.9518	0	1926568	2447377	1135652	1223804	6733401	0.27	0.4	0.16	0.17	0.33	0.8604	0.3459	0.7241	1.875	427	470	897	234833	259254	154313	175430	823830	0.29	0.3	0.18	0.23	0.41	0.8659	0.3405	0.7316	1.9314	0	373084	479444	213289	245644	1311461	0.27	0.4	0.15	0.18	0.33	0.8603	0.3786	0.7015	1.8682	37	40	77	1131	1378	1422	1833	5764	0.19	0.24	0.25	0.32	0.57	0.8826	0.2629	0.7759	1.9646	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	47806	59669	18093	29383	35152	52231	38832	41762	24782	31202	44226	55396	34459	9508	27870	30791	36350	33859	34420	42062	29393	29748	28348	52706	32827	21447	19463	48348	28130	36117	27601	38828	21310	24944	29430	28896	18575	15260	20888	23100	23929	8729	50015	21562	22514	39205	23374	35767	23584	28899	14168	11316	22371	27614	28034	29370	7778	10492	12370	10443	39878	8974	18729	11745