GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_958449725.1	NC_084820	NC_084820.1	Rosa rugosa chromosome 1; drRosRugo1.1; whole genome shotgun sequence.	22151872	22121371	14344105	14324541	33200	72975089	0.3	0.3	0.2	0.2	0.39	0.9463	0.0014	0.9986	1.9665	3364	3412	6776	6433306	7463787	4192485	4696440	2200	22788218	0.28	0.32	0.19	0.21	0.4	0.9115	0.1751	0.8448	1.9573	51074	2621	2748	5369	2030210	1939468	1483279	1754609	7207566	0.28	0.27	0.2	0.24	0.44	0.8737	0.2987	0.7591	1.9533	1	2078044	2743500	1219162	1338384	2200	7381290	0.27	0.4	0.16	0.17	0.33	0.8592	0.3507	0.7208	1.873	0	657	600	1257	410466	465641	280206	314870	1471183	0.28	0.3	0.19	0.23	0.41	0.8695	0.3427	0.7288	1.9347	0	504594	673143	291578	350674	0	1819989	0.26	0.4	0.15	0.18	0.33	0.8608	0.3894	0.6939	1.8685	49	40	89	1307	1606	1644	2060	6617	0.2	0.24	0.25	0.31	0.56	0.8874	0.2392	0.7963	1.9706	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	60818	75412	23501	39414	44823	66710	51019	54373	33593	42103	55789	70829	45610	12736	36110	40287	47597	43316	46947	55172	38581	39581	38112	68267	42596	28287	25067	62010	37425	48011	37176	50922	28388	32167	38037	37459	24757	20107	28240	30280	31835	11567	64226	28447	29461	51965	31359	46422	31297	37516	18543	14661	28840	35415	36336	37570	10250	13384	16595	13762	52149	12369	25007	15029
GCF_958449725.1	NC_084821	NC_084821.1	Rosa rugosa chromosome 2; drRosRugo1.1; whole genome shotgun sequence.	22117401	22089829	14285726	14250509	37200	72780665	0.3	0.3	0.2	0.2	0.39	0.9453	0.0019	0.9981	1.966	3054	3106	6160	6193126	7139456	3992407	4456247	4800	21786036	0.28	0.32	0.19	0.21	0.4	0.9106	0.1807	0.8403	1.9554	56366	2332	2360	4692	1821889	1743964	1305202	1541975	6413030	0.29	0.27	0.2	0.24	0.44	0.8739	0.2971	0.7602	1.9522	1	2169377	2757895	1276817	1383189	3000	7590278	0.27	0.4	0.16	0.17	0.33	0.86	0.3417	0.7267	1.8733	0	636	671	1307	407704	467721	280837	313200	1469462	0.28	0.31	0.19	0.23	0.41	0.8691	0.3449	0.7271	1.9339	7	480329	650525	278550	337595	0	1746999	0.26	0.41	0.15	0.19	0.34	0.8604	0.3997	0.6866	1.8696	47	58	105	1524	1881	1903	2375	7683	0.2	0.24	0.25	0.31	0.56	0.8846	0.2645	0.7755	1.9678	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	55130	67202	20915	35321	40177	56840	44386	50043	28906	38098	51275	63594	41041	10926	32124	36491	43404	38358	41901	50398	33589	34809	33157	60244	37024	24875	23358	56775	33713	42684	32720	46583	24414	29246	34718	32143	21261	17546	24818	25281	27683	9399	57563	24041	26343	46041	26860	41935	28307	33110	15827	11919	26366	31386	32151	34446	9750	11673	13559	12022	48191	11388	22883	13493
GCF_958449725.1	NC_084822	NC_084822.1	Rosa rugosa chromosome 3; drRosRugo1.1; whole genome shotgun sequence.	17867179	17866446	11650014	11624693	26400	59034732	0.3	0.3	0.2	0.2	0.39	0.9459	0.0011	0.9989	1.9674	2661	2778	5439	5235383	6057959	3416806	3809025	2200	18521373	0.28	0.32	0.19	0.21	0.4	0.9115	0.1773	0.843	1.9573	4816	2077	2198	4275	1595370	1524572	1168334	1380487	5668763	0.28	0.27	0.2	0.24	0.44	0.8741	0.3023	0.7567	1.9527	0	1714181	2240893	1013954	1096686	1400	6067114	0.27	0.4	0.16	0.17	0.33	0.8587	0.3506	0.7208	1.873	0	540	520	1060	339266	388398	232161	264443	1224268	0.28	0.3	0.19	0.23	0.41	0.8691	0.3457	0.7261	1.9344	0	477727	623106	277532	333803	200	1712368	0.26	0.4	0.15	0.19	0.34	0.8605	0.401	0.6856	1.8707	27	38	65	930	1156	1205	1510	4801	0.19	0.24	0.25	0.32	0.57	0.8782	0.269	0.7756	1.9617	1	3	4	111	100	127	138	476	0.23	0.21	0.27	0.29	0	0.56	0.8944	0.1042	0.9031	1.9875	47812	59886	18551	30417	35772	52058	40894	42914	26488	33035	44303	55265	36132	9825	28361	31847	38098	34544	36740	42957	30416	30596	29874	53489	33490	21865	19453	48474	28421	37767	28476	40261	22118	24554	29462	29395	18972	16113	21514	24097	24809	9065	50811	22176	23658	40741	24059	36847	24985	29384	14890	11447	22765	28440	28466	29935	8424	10692	13331	10647	40971	10034	20755	12158
GCF_958449725.1	NC_084823	NC_084823.1	Rosa rugosa chromosome 4; drRosRugo1.1; whole genome shotgun sequence.	17670033	17647609	11435203	11397737	25600	58176182	0.3	0.3	0.2	0.2	0.39	0.9461	0.0023	0.9977	1.9663	2513	2599	5112	5169814	5954366	3352115	3749507	2600	18228402	0.28	0.32	0.19	0.21	0.4	0.9116	0.177	0.8433	1.957	9804	1973	2021	3994	1535339	1457608	1114219	1324302	5431468	0.29	0.27	0.2	0.24	0.44	0.8739	0.3021	0.7564	1.9522	25	1753327	2261637	1028844	1116756	2000	6162564	0.27	0.4	0.16	0.17	0.33	0.8601	0.348	0.7226	1.8743	0	479	519	998	324369	368348	224588	251778	1169083	0.28	0.3	0.19	0.23	0.42	0.8698	0.3429	0.7287	1.9351	0	438354	570276	262631	310805	0	1582066	0.26	0.4	0.15	0.19	0.34	0.8608	0.4046	0.6838	1.8689	41	35	76	1101	1356	1417	1814	5688	0.19	0.24	0.25	0.32	0.57	0.8803	0.2679	0.7725	1.9627	1	2	3	87	81	90	98	356	0.24	0.23	0.25	0.28	0	0.53	0.8962	0.0794	0.9258	1.9952	46722	58386	17725	29459	34734	50987	38450	40928	24906	30912	43520	53503	34233	9309	27303	30352	36135	33288	34325	41561	29210	29968	28169	51485	32126	21176	18849	47151	27673	35569	27154	38248	21133	24236	28905	28160	18171	14930	20430	22931	23744	8587	48589	21227	22137	38788	23290	35049	23188	28595	14163	10931	21736	27536	27963	29004	7607	10217	12289	10467	38979	8925	18523	11579
GCF_958449725.1	NC_084824	NC_084824.1	Rosa rugosa chromosome 5; drRosRugo1.1; whole genome shotgun sequence.	17102087	17067326	11093793	11096166	34600	56393972	0.3	0.3	0.2	0.2	0.39	0.9501	0.0011	0.9989	1.9668	2335	2365	4700	4825811	5573707	3149404	3502299	3400	17054621	0.28	0.32	0.19	0.21	0.4	0.9114	0.1786	0.842	1.9563	28575	1811	1840	3651	1406579	1338380	1019277	1205815	4970051	0.29	0.27	0.2	0.24	0.44	0.8735	0.304	0.7551	1.9519	1	1593373	2067012	945890	1022867	2200	5631342	0.27	0.4	0.16	0.17	0.33	0.8592	0.3504	0.7212	1.8735	0	469	483	952	320128	366957	220051	249637	1156773	0.28	0.3	0.19	0.23	0.42	0.8689	0.3427	0.7287	1.9351	0	452493	585121	272258	318467	0	1628339	0.26	0.41	0.15	0.18	0.33	0.8601	0.4036	0.6843	1.8666	30	25	55	789	975	1014	1304	4082	0.19	0.24	0.25	0.32	0.57	0.8891	0.2639	0.7756	1.9648	0	1	1	39	38	36	42	155	0.25	0.25	0.23	0.27	0	0.5	0.8747	0.0899	0.9158	1.9978	42156	52786	16101	26661	31380	45127	35745	38084	22958	28851	38893	49002	31989	8635	25170	27415	33382	29797	31981	38178	26179	27192	25845	47161	28940	18942	17576	42306	25265	32959	25633	34654	19329	22251	26412	25623	16711	13633	18930	20455	21976	7911	44753	19455	20589	35942	20891	33031	21909	26191	12645	9641	20048	24893	25189	26981	7217	9065	11390	9172	35875	8606	17676	10531
GCF_958449725.1	NC_084825	NC_084825.1	Rosa rugosa chromosome 6; drRosRugo1.1; whole genome shotgun sequence.	16658779	16690314	10744260	10781146	24800	54899299	0.3	0.3	0.2	0.2	0.39	0.9445	0.0027	0.9973	1.966	3029	2365	5394	5060443	5809840	3286409	3662020	2400	17821112	0.27	0.31	0.2	0.22	0.42	0.9096	0.1667	0.8517	1.9599	62907	1876	1847	3723	1432640	1371185	1033799	1220480	5058104	0.29	0.27	0.2	0.24	0.44	0.8738	0.3014	0.7573	1.9513	1	1666133	2127815	984029	1068465	1600	5848042	0.27	0.4	0.16	0.17	0.33	0.8596	0.3499	0.7217	1.8729	5922	478	479	957	303644	349556	208144	236010	1097354	0.28	0.31	0.19	0.23	0.41	0.8702	0.3419	0.729	1.9349	1	464017	594127	272246	318562	400	1649352	0.26	0.41	0.15	0.18	0.34	0.8598	0.4034	0.6848	1.8677	24	21	45	659	801	840	1043	3343	0.2	0.24	0.25	0.31	0.56	0.8899	0.236	0.7959	1.9723	623	0	623	19105	17215	21403	23111	80834	0.24	0.21	0.27	0.29	0	0.55	0.8937	0.087	0.9171	1.9902	43420	52769	16559	27374	31113	45035	35042	38625	23082	29540	40840	49506	32738	8863	25518	28744	33660	30428	32818	39109	27178	27216	26750	47552	29378	19593	18220	44486	25843	33489	25982	37176	19090	22802	27083	25474	17019	13686	19154	20132	21925	8033	45276	19163	20879	36165	21722	33118	22500	26892	12832	9811	21186	24680	25641	26824	7634	9578	11125	9457	37447	8880	17963	10707
GCF_958449725.1	NC_084826	NC_084826.1	Rosa rugosa chromosome 7; drRosRugo1.1; whole genome shotgun sequence.	12598259	12568963	8119781	8077335	21000	41385338	0.3	0.3	0.2	0.2	0.39	0.95	0.0038	0.9962	1.9655	1892	1903	3795	3629002	4236985	2353433	2639521	3600	12862541	0.28	0.32	0.19	0.21	0.4	0.911	0.1809	0.8401	1.9562	41741	1484	1480	2964	1103819	1054044	800578	946512	3904953	0.28	0.27	0.2	0.24	0.44	0.8735	0.3004	0.7574	1.9533	0	1198817	1586019	697843	763107	1800	4247586	0.27	0.4	0.16	0.17	0.33	0.8597	0.3497	0.7214	1.8734	0	366	365	731	248895	286384	170684	194453	900416	0.28	0.3	0.19	0.23	0.42	0.871	0.3415	0.7294	1.9354	0	307967	400919	181989	217094	600	1108569	0.26	0.41	0.15	0.19	0.34	0.8597	0.4096	0.6799	1.8685	20	32	52	767	911	954	1204	3836	0.2	0.24	0.25	0.31	0.56	0.8904	0.2586	0.7798	1.9688	2	12	14	418	376	440	469	1703	0.25	0.22	0.26	0.28	0	0.53	0.8876	0.0939	0.9114	1.9942	32915	41772	12783	21652	24120	36329	27805	30263	18251	22428	30946	38410	24749	6776	19730	21865	26027	23314	25262	30175	20359	21399	20033	37048	22984	15343	13553	33577	20098	25768	20144	28089	15047	17596	20440	19962	13501	11044	15011	16173	16988	6111	34603	14877	16005	28291	16681	25497	16955	20496	9956	7718	15591	19477	19550	20185	5586	7244	8747	7523	28396	6636	13720	8303