GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_023119035.1	NC_062965	NC_062965.1	Salvia hispanica cultivar TCC Black 2014 chromosome 1; UniMelb_Shisp_WGS_1.0; whole genome shotgun sequence.	16915126	16893960	9633407	9618381	129659	53190533	0.32	0.32	0.18	0.18	0.36	0.9465	0.0014	0.9986	1.9438	2915	2907	5822	4887172	5504647	3225649	3578158	21146	17216772	0.28	0.31	0.2	0.22	0.42	0.9103	0.1662	0.8527	1.961	35960	2584	2554	5138	1838970	1721162	1473600	1701953	4	6735689	0.28	0.26	0.21	0.25	0.46	0.8749	0.2986	0.7593	1.9536	6	1808635	2332529	1000030	1082665	11619	6235478	0.28	0.39	0.16	0.17	0.33	0.8579	0.3496	0.7217	1.8713	0	227	250	477	89312	99543	62268	68777	319900	0.29	0.3	0.19	0.22	0	0.41	0.8696	0.3513	0.7228	1.9273	142	117696	142071	63820	75841	100	399528	0.28	0.39	0.16	0.18	0	0.33	0.8599	0.365	0.7107	1.8716	51	58	109	1582	1917	2012	2547	8058	0.2	0.24	0.25	0.32	0.57	0.8843	0.258	0.7815	1.9658	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	57512	67003	19299	30305	37494	66216	43678	46959	34357	37996	49534	62737	38396	19435	29008	38703	38517	45293	46645	42755	37570	29996	44039	63389	37143	26572	24094	55445	30793	44094	41835	41434	28078	29632	32813	36361	25852	21469	27097	34394	32470	16983	56560	33225	30365	41929	30958	41924	25837	32315	25734	24247	24620	30230	34751	32183	8908	17794	22491	15134	44633	10089	22865	18665
GCF_023119035.1	NC_062966	NC_062966.1	Salvia hispanica cultivar TCC Black 2014 chromosome 2; UniMelb_Shisp_WGS_1.0; whole genome shotgun sequence.	12801311	12811663	7233287	7237896	91562	40175719	0.32	0.32	0.18	0.18	0.36	0.947	0.0007	0.9993	1.9424	2490	2418	4908	4011591	4584546	2689289	2974394	8594	14268414	0.27	0.31	0.2	0.22	0.42	0.9104	0.1641	0.854	1.9619	26588	2218	2165	4383	1594212	1501050	1285770	1479966	64	5861062	0.28	0.26	0.21	0.25	0.46	0.8751	0.2944	0.7617	1.9549	18	1533596	2014967	861227	920878	4420	5335088	0.27	0.4	0.16	0.17	0.33	0.8577	0.3506	0.7209	1.872	0	192	179	371	73129	80995	51757	56722	262603	0.29	0.3	0.2	0.22	0	0.41	0.8688	0.3454	0.7271	1.9289	90	76045	90301	39511	47786	100	253743	0.28	0.39	0.15	0.18	0	0.33	0.8571	0.365	0.7096	1.8683	44	52	96	1329	1734	1769	2288	7120	0.19	0.24	0.25	0.32	0.57	0.8852	0.2972	0.7485	1.9623	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	49034	57224	16220	27114	33595	56786	39486	39554	30209	33089	41849	53706	33964	16507	25309	32902	34688	39231	41269	37861	33489	26309	36823	54920	34355	22698	19672	46316	27461	38452	36435	35513	24455	25604	28299	30920	23532	18735	24363	29713	29162	14445	48798	28617	26566	37283	27485	36882	23160	29004	21896	20829	20377	27281	29945	27752	8575	14838	19459	12769	38580	9737	21056	15671
GCF_023119035.1	NC_062967	NC_062967.1	Salvia hispanica cultivar TCC Black 2014 chromosome 3; UniMelb_Shisp_WGS_1.0; whole genome shotgun sequence.	17959128	17992768	10008470	10006605	72826	56039797	0.32	0.32	0.18	0.18	0.36	0.9487	0.001	0.999	1.94	3791	3605	7396	6091759	7069824	4108762	4560691	11305	21842341	0.27	0.31	0.2	0.22	0.42	0.91	0.1663	0.8521	1.961	64127	3375	3205	6580	2333916	2188140	1920029	2218681	0	8660766	0.28	0.26	0.21	0.25	0.46	0.8735	0.3005	0.7574	1.9543	392	2459347	3289372	1382782	1499885	10273	8641659	0.27	0.4	0.16	0.17	0.33	0.8587	0.351	0.7201	1.8734	0	268	280	548	95311	104685	66368	71992	338356	0.29	0.3	0.19	0.22	0	0.41	0.8696	0.3234	0.7419	1.9327	173	127597	153623	69221	79412	0	429853	0.28	0.39	0.16	0.17	0	0.33	0.8597	0.3473	0.7226	1.8712	91	88	179	2553	3208	3303	4149	13213	0.19	0.24	0.25	0.31	0.57	0.8832	0.2764	0.7695	1.9635	0	1	1	36	33	42	45	156	0.23	0.21	0.27	0.29	0	0.56	0.8747	0.078	0.925	1.9893	73541	85735	23779	39699	50563	85735	60755	55879	44800	49204	60449	77969	49654	25660	36244	48036	51513	58103	60226	54619	51158	39077	55386	80636	51586	33933	28482	65355	38747	56547	53316	50859	36694	36302	40594	46448	33966	28230	34713	46342	43620	22609	70992	43598	40087	54911	41593	54261	32445	41376	33931	33014	28467	40706	45511	40558	12483	23474	30077	18993	55585	13829	31347	23659
GCF_023119035.1	NC_062968	NC_062968.1	Salvia hispanica cultivar TCC Black 2014 chromosome 4; UniMelb_Shisp_WGS_1.0; whole genome shotgun sequence.	18518199	18458508	10457986	10438318	111712	57984723	0.32	0.32	0.18	0.18	0.36	0.9455	0.0026	0.9974	1.9426	3371	3457	6828	5543021	6392734	3718746	4115769	7020	19777290	0.27	0.31	0.2	0.22	0.42	0.9099	0.1665	0.852	1.9612	11906	2933	3051	5984	2081173	1945803	1708917	1957618	0	7693511	0.28	0.26	0.21	0.25	0.46	0.8743	0.2994	0.7585	1.9543	9	2263205	2987435	1264294	1373806	5410	7894150	0.27	0.39	0.16	0.17	0.33	0.8583	0.3486	0.7223	1.8724	1195	305	323	628	121697	137536	84889	93997	438119	0.28	0.3	0.2	0.22	0	0.42	0.869	0.331	0.7363	1.9321	0	128464	156637	67220	78860	310	431491	0.28	0.39	0.16	0.17	0	0.33	0.8579	0.3579	0.7158	1.8664	77	48	125	1770	2244	2320	2916	9250	0.19	0.24	0.25	0.32	0.57	0.8847	0.2691	0.7735	1.965	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	65255	76844	21182	35132	45268	75533	53201	50185	40615	43263	54249	68563	44426	21610	32770	43046	46182	51090	53694	48529	44669	34928	49202	71415	45731	30305	25362	58282	34376	50008	46824	45629	32251	32238	36422	41561	31021	25739	31548	41090	38715	19809	63469	38352	35027	48196	36953	48100	28949	37147	28724	28042	25700	36549	40212	37095	11164	20827	26237	16648	50365	12596	27958	20446
GCF_023119035.1	NC_062969	NC_062969.1	Salvia hispanica cultivar TCC Black 2014 chromosome 5; UniMelb_Shisp_WGS_1.0; whole genome shotgun sequence.	13175427	13163228	7517013	7523795	73654	41453117	0.32	0.32	0.18	0.18	0.36	0.9477	0.0009	0.9991	1.9446	2394	2397	4791	3874207	4468967	2606377	2880907	7278	13837736	0.27	0.31	0.2	0.22	0.42	0.9101	0.166	0.8523	1.9613	7696	2131	2119	4250	1474853	1383020	1210762	1389224	0	5457859	0.28	0.26	0.21	0.25	0.46	0.8747	0.2959	0.7608	1.9556	3	1549339	2049522	866405	936398	2891	5404555	0.27	0.39	0.16	0.17	0.33	0.8589	0.35	0.7211	1.874	0	184	215	399	72730	81338	50220	55455	259743	0.28	0.3	0.19	0.22	0	0.41	0.8687	0.343	0.7286	1.9287	78	82413	101077	42285	53205	100	279080	0.28	0.39	0.16	0.18	0	0.33	0.8599	0.3662	0.7089	1.8746	33	41	74	1087	1335	1366	1725	5513	0.2	0.24	0.25	0.31	0.56	0.8856	0.2386	0.7948	1.9699	5	2	7	621	621	613	706	2561	0.23	0.22	0.27	0.28	0	0.55	0.8935	0.0575	0.9451	1.9914	46321	54750	15289	25499	31830	54004	37946	35829	28457	30417	38579	49103	30827	15519	22625	31006	32320	36644	38724	34990	31560	24828	35577	51229	32157	21765	18573	41594	24761	35620	33906	32299	23261	23031	26048	30036	21308	18182	22401	29385	27379	13907	44487	27698	24452	34842	26184	34033	20027	25892	20365	19831	17713	25698	28500	25834	7783	13991	18470	11732	35056	8368	18945	14351
GCF_023119035.1	NC_062970	NC_062970.1	Salvia hispanica cultivar TCC Black 2014 chromosome 6; UniMelb_Shisp_WGS_1.0; whole genome shotgun sequence.	15337327	15352603	8764012	8751714	108907	48314563	0.32	0.32	0.18	0.18	0.36	0.9466	0.0012	0.9988	1.9443	2712	2648	5360	4529068	5161638	2975112	3303578	8433	15977829	0.28	0.31	0.2	0.22	0.41	0.9101	0.167	0.8516	1.9601	32609	2387	2297	4684	1701813	1589521	1347046	1568264	0	6206644	0.28	0.26	0.21	0.25	0.46	0.8747	0.2993	0.7584	1.9543	4	1771604	2316099	984975	1059966	6833	6139477	0.27	0.39	0.16	0.17	0.33	0.8585	0.348	0.7223	1.8727	0	249	254	503	83233	94874	59851	63598	301556	0.29	0.3	0.2	0.22	0	0.42	0.8668	0.355	0.7203	1.9265	198	102122	121069	52812	63424	0	339427	0.29	0.38	0.16	0.17	0	0.33	0.8602	0.3477	0.7211	1.8743	31	49	80	1216	1380	1506	1862	5964	0.2	0.23	0.25	0.31	0.57	0.8845	0.2313	0.8018	1.9683	9	15	24	683	604	772	839	2898	0.24	0.21	0.27	0.29	0	0.56	0.898	0.1038	0.9027	1.9864	53883	62146	17537	29095	36406	61242	42345	42916	31225	35387	45319	57242	35656	16937	26975	34982	37042	40811	41952	40359	34858	28171	38617	58229	36005	23515	21716	49493	28685	40757	37673	37586	25353	27655	29807	33192	23757	19679	24952	31364	30317	14954	52361	30060	27792	39726	29006	39706	23408	30104	22354	20999	21992	29228	31949	29251	9288	15414	19574	13693	41216	10562	22556	16714
NA	NC_046838	NC_046838.1	Salvia hispanica chloroplast; complete genome.	46241	47392	29145	28202	0	150980	0.31	0.31	0.19	0.19	0.38	0.9373	0.0287	0.9717	1.9578	50	80	130	32748	32480	19806	23341	0	108375	0.28	0.29	0.19	0.23	0.43	0.8963	0.2185	0.8112	1.9514	155	29	54	83	23641	24217	13652	15698	0	77208	0.3	0.31	0.17	0.21	0.38	0.8871	0.2647	0.7829	1.9282	155	2523	2383	1187	1444	0	7537	0.33	0.32	0.16	0.19	0.35	0.9005	0.1321	0.7891	1.9281	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	20	37	613	696	659	819	2787	0.22	0.25	0.24	0.3	0.53	0.8784	0.2446	0.7956	1.9667	4	4	8	2354	1700	2136	2858	9048	0.26	0.2	0.23	0.31	0	0.53	0.9106	0.2802	0.7573	1.9791	605	361	523	509	379	337	602	1067	336	460	960	995	397	129	415	295	574	194	493	986	192	516	166	828	217	249	390	554	736	668	453	579	161	648	376	203	144	225	184	204	125	114	1043	191	79	516	332	486	230	466	199	160	814	381	174	299	40	140	168	324	707	62	39	330