GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_020520425.1	NC_079487	NC_079487.1	Spinacia oleracea cultivar Varoflay chromosome 1; BTI_SOV_V1; whole genome shotgun sequence.	42541144	42558491	25695868	25728601	900	136525004	0.31	0.31	0.19	0.19	0.38	0.9234	0.0008	0.9992	1.9557	3024	3088	6112	8567025	9793804	5093014	5671183	0	29125026	0.29	0.33	0.18	0.2	0.38	0.9085	0.1768	0.844	1.9428	32877	2339	2430	4769	1872185	1761273	1241884	1512891	6388233	0.29	0.28	0.19	0.24	0.43	0.8737	0.308	0.7524	1.9491	9	4066525	4921146	2302901	2524398	0	13814970	0.28	0.39	0.16	0.17	0.33	0.8633	0.3254	0.7387	1.872	583	572	1155	354341	401413	236431	237169	1229354	0.28	0.31	0.2	0.21	0	0.41	0.8703	0.3458	0.725	1.9234	421	693233	846439	372744	422948	2335364	0.27	0.41	0.15	0.17	0	0.32	0.8554	0.3866	0.6996	1.8501	70	62	132	1933	2350	2497	3086	9866	0.2	0.24	0.25	0.31	0.57	0.891	0.2408	0.7929	1.9684	2	3	5	1006	1030	909	1108	4053	0.24	0.23	0.25	0.28	0.53	0.9048	0.0807	0.9246	1.9912	55419	65269	24403	35347	38218	53920	46073	50738	25236	36135	54736	66774	41216	11663	32638	36338	42607	35591	38656	51875	29463	37774	26041	66110	33268	23315	23582	53261	35759	42048	31815	44884	21740	31316	36211	28790	20147	16379	24347	21181	24364	8445	65066	19879	23171	50155	27224	42790	30173	34746	15166	12109	32474	34149	32001	33737	10097	10287	12543	14002	50165	13184	22890	14299
GCF_020520425.1	NC_079488	NC_079488.1	Spinacia oleracea cultivar Varoflay chromosome 2; BTI_SOV_V1; whole genome shotgun sequence.	35753850	35831897	21576127	21626250	500	114788624	0.31	0.31	0.19	0.19	0.38	0.9253	0.0023	0.9978	1.9554	3169	2574	5743	7918773	9007691	4722295	5233531	200	26882490	0.29	0.32	0.19	0.21	0.4	0.9082	0.1652	0.854	1.9463	35825	2064	2054	4118	1645517	1551368	1098952	1338349	5634186	0.29	0.28	0.19	0.24	0.43	0.8734	0.3089	0.752	1.9485	8	3939013	4740144	2235762	2430830	200	13345949	0.28	0.39	0.16	0.17	0.33	0.8634	0.3236	0.7405	1.872	502	433	935	297155	338487	196505	197709	1029856	0.28	0.31	0.2	0.21	0	0.41	0.8681	0.3552	0.7182	1.9178	0	550160	666278	290240	332595	1839273	0.27	0.41	0.15	0.17	0	0.32	0.8514	0.4069	0.6878	1.8446	53	41	94	1355	1702	1739	2168	6964	0.19	0.24	0.25	0.31	0.56	0.8842	0.2736	0.7696	1.9667	520	21	541	28863	27278	31691	36484	124316	0.22	0.21	0.27	0.29	0.56	0.9041	0.0617	0.941	1.9873	48713	56572	21346	30925	34048	47359	40612	44368	22423	31900	47960	58975	36534	10561	29241	31871	38511	31509	34200	45912	25603	33850	22945	58514	29289	20357	20395	46796	31105	36782	27288	39045	18772	27026	31429	25237	17974	14589	21369	18768	21062	7435	57651	17675	20423	44748	24152	37717	26760	30703	13667	11103	27639	30871	28763	30134	8799	9448	11611	12383	44606	11576	20384	12665
GCF_020520425.1	NC_079489	NC_079489.1	Spinacia oleracea cultivar Varoflay chromosome 3; BTI_SOV_V1; whole genome shotgun sequence.	49791355	49788342	30249121	30214058	1100	160043976	0.31	0.31	0.19	0.19	0.38	0.9364	0.0006	0.9994	1.9565	3183	3208	6391	9315838	10495014	5529788	6095970	0	31436610	0.29	0.32	0.18	0.2	0.39	0.9075	0.1761	0.8453	1.943	30008	2456	2352	4808	1888238	1760100	1246953	1521178	6416469	0.29	0.28	0.19	0.24	0.43	0.8733	0.3101	0.7513	1.9476	2606	4694032	5522585	2675083	2874627	0	15766327	0.28	0.39	0.16	0.17	0.33	0.8637	0.3209	0.7424	1.8721	650	622	1272	406726	463048	270259	272552	1412585	0.28	0.31	0.2	0.21	0	0.41	0.8687	0.3543	0.7195	1.9197	111	720349	884151	385720	438164	2428384	0.27	0.41	0.15	0.17	0	0.32	0.8514	0.4018	0.6903	1.8439	53	50	103	1508	1749	1967	2394	7618	0.2	0.23	0.26	0.31	0.57	0.8829	0.2122	0.817	1.9687	2	166	168	5930	5560	7053	7841	26384	0.22	0.21	0.27	0.29	0.57	0.9042	0.0563	0.9457	1.9856	55276	65750	24218	34788	37986	54053	45530	51083	25646	36283	54991	67085	41162	12144	33400	37034	42683	35206	38443	52038	28995	37977	25985	66513	33397	23694	23638	53353	35745	42003	31420	43869	21539	31354	35995	29651	20655	16461	24537	21206	24072	8569	67055	19825	23159	49782	27611	42849	30659	35099	15536	12696	32037	33556	32363	33296	10293	10891	13409	14237	51708	13611	22977	14785
GCF_020520425.1	NC_079490	NC_079490.1	Spinacia oleracea cultivar Varoflay chromosome 4; BTI_SOV_V1; whole genome shotgun sequence.	58770290	58712746	35797743	35769577	1900	189052256	0.31	0.31	0.19	0.19	0.38	0.9313	0.0009	0.9991	1.957	3869	3912	7781	11168025	12634024	6619627	7316451	100	37738227	0.29	0.33	0.18	0.2	0.38	0.9073	0.1812	0.8409	1.9415	26521	2893	2933	5826	2251552	2109220	1470004	1814798	7645574	0.29	0.28	0.19	0.24	0.43	0.8734	0.3125	0.7498	1.9467	18	5280131	6256941	3020133	3250590	100	17807895	0.28	0.39	0.16	0.17	0.33	0.8625	0.3256	0.7388	1.8704	849	855	1704	541939	619734	354467	360931	1877071	0.29	0.31	0.2	0.21	0	0.4	0.8694	0.3516	0.7214	1.9208	111	1006362	1235821	533386	598077	3373646	0.27	0.41	0.15	0.17	0	0.32	0.856	0.3726	0.7071	1.8493	76	81	157	2310	2865	2916	3736	11827	0.19	0.24	0.25	0.32	0.56	0.8813	0.2693	0.7724	1.966	0	12	12	5059	4735	5149	6463	21406	0.23	0.22	0.25	0.29	0.54	0.9109	0.12	0.8896	1.9877	66272	79728	28841	41857	44733	65864	54549	61693	29713	43229	67178	81655	48341	14199	40113	43528	50883	42346	45968	63163	33642	45779	29915	81257	38944	27290	27825	64705	43364	49755	36552	52719	25322	37000	42456	35001	23746	19420	29198	25061	28337	9766	80425	23717	27046	60518	32682	50241	36623	41408	18319	14384	38517	41224	38909	40060	11757	12709	15422	17150	60554	15652	26204	17158
GCF_020520425.1	NC_079491	NC_079491.1	Spinacia oleracea cultivar Varoflay chromosome 5; BTI_SOV_V1; whole genome shotgun sequence.	39582359	39503952	24194581	24085997	1000	127367889	0.31	0.31	0.19	0.19	0.38	0.9363	0.0032	0.9968	1.9574	2580	2557	5137	7308337	8269011	4338300	4790186	100	24705934	0.29	0.33	0.18	0.2	0.38	0.9075	0.1787	0.8429	1.9422	19352	1973	1901	3874	1470939	1378119	964747	1184798	4998603	0.29	0.28	0.19	0.24	0.43	0.8722	0.3128	0.7499	1.9464	9	3560850	4219286	2029065	2185980	100	11995281	0.28	0.39	0.16	0.17	0.33	0.862	0.3256	0.739	1.8688	519	564	1083	341760	392818	225165	227816	1187559	0.28	0.31	0.2	0.21	0	0.4	0.8683	0.3534	0.7202	1.9196	40	640533	779413	341357	384525	2145828	0.27	0.41	0.15	0.17	0	0.32	0.8536	0.3838	0.7016	1.8488	59	60	119	1651	2188	2137	2781	8757	0.19	0.25	0.24	0.32	0.56	0.8875	0.3023	0.7495	1.962	1	13	14	5860	5429	6019	7563	24871	0.23	0.22	0.25	0.29	0.54	0.9113	0.1203	0.8893	1.9878	43196	52304	19229	27718	29658	42394	35742	39884	19897	28289	43451	52866	31786	9004	25863	28305	33778	27915	29970	40992	22158	29791	19898	52413	25181	17984	18081	41905	28209	32280	24370	34292	16508	24446	27764	22698	15769	12946	18998	16682	18453	6670	52187	15208	18255	39105	21484	33709	24029	27172	11862	9365	25146	26599	25143	25995	7840	8256	9930	10973	39627	10352	18301	11300
GCF_020520425.1	NC_079492	NC_079492.1	Spinacia oleracea cultivar Varoflay chromosome 6; BTI_SOV_V1; whole genome shotgun sequence.	47156538	47108997	28597538	28586306	900	151450279	0.31	0.31	0.19	0.19	0.38	0.9245	0.0007	0.9993	1.9563	3143	3148	6291	8775709	9839912	5191633	5717109	0	29524363	0.29	0.33	0.18	0.2	0.38	0.9075	0.1773	0.8443	1.9418	63291	2398	2380	4778	1813174	1691248	1191653	1455653	6151728	0.29	0.28	0.19	0.24	0.43	0.874	0.3091	0.752	1.9473	13	4071806	4748737	2312168	2469199	0	13601910	0.28	0.39	0.16	0.17	0.33	0.8621	0.3225	0.7413	1.8692	649	682	1331	447523	513608	295074	302640	1558845	0.29	0.31	0.19	0.21	0	0.4	0.8711	0.3386	0.7304	1.926	47	869355	1050352	468076	527218	2915001	0.28	0.41	0.15	0.17	0	0.32	0.8595	0.3509	0.7213	1.8548	59	60	119	1741	2008	2229	2767	8745	0.2	0.23	0.26	0.32	0.57	0.8813	0.262	0.7786	1.9636	9	0	9	2663	2479	2686	3327	11155	0.24	0.22	0.25	0.29	0.54	0.9004	0.1053	0.9022	1.9891	53632	63910	23854	33640	36555	51315	42646	48776	23764	35188	53842	63995	39243	11594	31948	36659	39965	34303	36899	50288	26833	37262	24752	64234	31204	22861	23007	51488	35136	39762	30410	42283	20640	30351	34446	27922	19668	15624	24381	20266	22765	7906	63555	19289	21886	47816	26698	40609	29533	33382	14949	11794	31202	32429	31116	32550	9600	10244	12714	13514	49934	12491	20403	14236
NA	NC_035618	NC_035618.1	Spinacia oleracea mitochondrion; complete genome.	92981	93546	71843	71243	0	329613	0.28	0.28	0.22	0.22	0.43	0.9507	0.0072	0.9928	1.9874	16	39	55	13140	13732	10850	11920	0	49642	0.26	0.28	0.21	0.25	0.46	0.9023	0.1837	0.8397	1.975	0	9	19	28	6888	7924	5270	5502	25584	0.27	0.32	0.2	0.21	0.41	0.8981	0.2109	0.8192	1.957	0	2199	2078	1906	2094	0	8277	0.26	0.25	0.23	0.26	0.49	0.9221	0.0622	0.7743	1.9919	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	16	23	405	451	385	476	1717	0.24	0.26	0.22	0.28	0.5	0.8906	0.1742	0.847	1.9839	0	3	3	1402	1234	1230	1525	5391	0.26	0.22	0.24	0.28	0.52	0.9163	0.1638	0.8512	1.9923	208	176	148	139	106	106	192	297	99	147	182	235	142	61	134	101	164	104	243	350	87	168	102	170	65	111	129	178	193	193	176	196	93	183	119	90	67	92	82	118	94	68	240	82	62	173	114	141	90	171	99	69	232	141	75	116	20	74	56	101	172	32	28	126
NA	NC_002202	NC_002202.1	Spinacia oleracea plastid; complete genome.	47134	48100	28277	27214	0	150725	0.31	0.32	0.19	0.18	0.37	0.9357	0.0293	0.9712	1.9491	55	84	139	28752	29004	17252	20668	0	95676	0.28	0.3	0.19	0.23	0.42	0.8936	0.2286	0.803	1.9468	135	35	57	92	20028	21057	11652	13647	66384	0.3	0.32	0.17	0.21	0.38	0.8858	0.2656	0.7815	1.9278	57	2469	2339	1058	1339	0	7205	0.34	0.32	0.15	0.19	0.34	0.896	0.1552	0.7613	1.9111	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16	20	36	589	683	638	804	2714	0.22	0.25	0.24	0.3	0.53	0.8753	0.2521	0.7903	1.9653	4	4	8	2356	1703	2132	2860	9051	0.27	0.2	0.23	0.3	0.53	0.9109	0.2718	0.7628	1.9806	544	283	471	448	343	266	548	962	256	387	729	840	318	133	354	241	481	166	419	860	145	507	147	665	165	209	331	454	650	634	353	505	127	584	343	173	127	164	163	208	126	98	844	161	70	467	278	373	210	381	155	151	763	356	144	258	37	110	119	303	603	64	42	305