GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_N Number of 'N' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_N Number of 'N' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000208745.1	NC_030850	NC_030850.1	Theobroma cacao cultivar B97-61/B2 chromosome 1; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	11843603	11809053	6160144	6140063	1370832	37323695	0.32	0.32	0.17	0.16	0.04	0.33	0.9453	0.0031	0.9969	1.9081	1609	1770	3379	3596597	4268659	2209147	2469251	44995	12588649	0.28	0.33	0.18	0.2	0.39	0.9116	0.1619	0.8553	1.9499	9328	1478	1617	3095	1200838	1157244	849334	1009473	2	4216891	0.29	0.28	0.2	0.24	0.44	0.8726	0.3	0.7579	1.9529	42	1599207	2155810	877995	960537	18261	5611810	0.27	0.41	0.16	0.17	0.32	0.859	0.3476	0.7221	1.8666	90	104	194	43167	46968	26185	29556	0	145876	0.31	0.29	0.17	0.22	0	0.39	0.8606	0.3779	0.7097	1.911	2	100649	117476	48315	56602	13519	336561	0.29	0.39	0.14	0.18	0.01	0.32	0.8573	0.3554	0.7191	1.8537	27	33	60	848	1029	1128	1415	4420	0.19	0.23	0.26	0.32	0.58	0.8836	0.2422	0.7926	1.9651	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	36041	42455	13569	22031	28365	35758	32902	32675	19045	23967	33778	43599	28326	7365	20243	22754	29682	23099	26776	33705	22664	23070	19593	40939	24863	15039	14118	36757	21734	28397	21128	32005	14865	19161	21895	18833	13275	10979	15134	16242	18786	5880	40099	15583	17838	32599	18075	27914	18590	22862	9340	7333	18987	23082	21572	23297	6399	6783	7108	8251	31454	7917	15760	8757
GCF_000208745.1	NC_030851	NC_030851.1	Theobroma cacao cultivar B97-61/B2 chromosome 2; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	12905690	12907922	6713225	6679055	2030548	41236440	0.31	0.31	0.16	0.16	0.05	0.32	0.944	0.0026	0.9974	1.9007	1491	1511	3002	3028848	3574737	1847031	2081562	45528	10577706	0.28	0.33	0.18	0.21	0.39	0.9105	0.1678	0.851	1.9488	6142	1324	1325	2649	994396	967616	705317	838624	5	3505958	0.29	0.28	0.2	0.24	0.44	0.8732	0.301	0.7571	1.9525	0	1260465	1696313	689823	754982	14506	4416089	0.27	0.4	0.16	0.17	0.33	0.8596	0.341	0.7267	1.8684	128	141	269	49835	51450	29633	34315	0	165233	0.32	0.28	0.17	0.23	0	0.4	0.8558	0.3942	0.7004	1.9079	0	151854	174489	68417	92077	24591	511428	0.3	0.38	0.13	0.19	0.01	0.32	0.8596	0.3644	0.7144	1.8562	31	29	60	834	1082	1100	1404	4420	0.19	0.24	0.25	0.32	0.57	0.8806	0.2926	0.7564	1.9606	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30257	34557	11374	18661	23903	29777	27727	27529	15457	20099	27965	36086	24155	5939	17123	18687	24973	19622	22448	28489	18851	19451	16243	33949	20197	12328	12004	30847	18246	23256	17448	26911	12056	15910	18204	15565	10921	9190	12421	13455	15589	4754	33155	13161	14741	27383	15306	23001	15097	18854	7630	5993	15892	19422	17814	19343	5091	5506	5872	6856	26185	6400	12713	7056
GCF_000208745.1	NC_030852	NC_030852.1	Theobroma cacao cultivar B97-61/B2 chromosome 3; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	11232405	11244353	5876086	5843045	2168405	36364294	0.31	0.31	0.16	0.16	0.06	0.32	0.933	0.0034	0.9967	1.8959	1342	1281	2623	2856284	3365919	1733172	1942523	40055	9937953	0.28	0.33	0.18	0.2	0.39	0.9112	0.1642	0.8536	1.9492	6903	1192	1149	2341	903351	866322	638869	759720	3	3168265	0.29	0.28	0.2	0.24	0.44	0.8724	0.3007	0.7569	1.9534	0	1267041	1686805	691631	753199	13861	4412537	0.27	0.4	0.16	0.17	0.33	0.8596	0.3435	0.7251	1.8681	113	97	210	45153	49143	26772	32112	0	153180	0.32	0.29	0.17	0.23	0	0.4	0.8589	0.3791	0.7074	1.9138	16	85560	101384	37693	52233	11106	287976	0.29	0.39	0.13	0.18	0.01	0.32	0.8557	0.3807	0.7018	1.8506	23	27	50	738	860	943	1169	3710	0.2	0.23	0.26	0.32	0.57	0.8806	0.2544	0.7843	1.9644	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27180	31916	10323	16603	21703	27502	24759	24624	14052	18214	25532	32133	21573	5609	15504	17386	22065	17675	19907	25249	16935	17215	14647	30278	18884	11214	10823	27447	16367	20938	16045	23852	10867	14384	16613	14186	9661	8436	10931	12155	14226	4431	30273	11846	13589	24338	13680	21024	13542	17146	6858	5564	14185	17565	16411	17730	4803	5167	5558	6064	23454	5954	11427	6486
GCF_000208745.1	NC_030853	NC_030853.1	Theobroma cacao cultivar B97-61/B2 chromosome 4; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	10040091	10042233	5193179	5219011	1434590	31929104	0.31	0.31	0.16	0.16	0.04	0.33	0.9353	0.0026	0.9974	1.903	1273	1192	2465	2613317	3096741	1577081	1783672	28532	9099343	0.28	0.33	0.18	0.2	0.38	0.9096	0.1714	0.8479	1.9483	9472	1162	1085	2247	887955	859017	611843	734968	1	3093784	0.29	0.28	0.19	0.24	0.43	0.8724	0.2976	0.7595	1.9529	0	1152568	1547155	625662	691457	15636	4032478	0.27	0.4	0.16	0.17	0.32	0.8594	0.3431	0.7249	1.8675	82	75	157	29591	32324	18450	20935	0	101300	0.31	0.29	0.17	0.22	0	0.4	0.8562	0.3936	0.697	1.9107	0	68454	80156	31006	42509	3960	226085	0.29	0.38	0.13	0.19	0	0.32	0.8613	0.3606	0.716	1.8689	10	17	27	370	489	492	632	1983	0.19	0.25	0.25	0.32	0.57	0.8842	0.3057	0.7487	1.9584	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	26680	31314	10021	16540	20939	25970	24214	24637	13393	17605	25818	32293	21499	4570	15559	16390	22039	17223	19345	25362	16393	17297	13758	30490	17950	10516	10556	27364	16735	20895	15614	23931	10542	14566	16506	13433	9445	7685	10969	11215	13562	3677	30086	11178	12896	24112	13043	20616	13974	16753	6124	4711	14603	16973	15962	17737	4633	4556	4737	5851	22706	5487	11106	5753
GCF_000208745.1	NC_030854	NC_030854.1	Theobroma cacao cultivar B97-61/B2 chromosome 5; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	12279046	12261217	6305392	6298404	2227820	39371879	0.31	0.31	0.16	0.16	0.06	0.32	0.9368	0.0013	0.9987	1.8946	1296	1320	2616	2957428	3469355	1749556	1970824	72033	10219196	0.29	0.33	0.18	0.2	0.38	0.9095	0.1718	0.8473	1.9461	13270	1160	1172	2332	933650	898447	640848	768249	3	3241197	0.29	0.28	0.19	0.24	0.43	0.8728	0.2998	0.7581	1.9523	0	1339927	1759068	715135	780938	40469	4635537	0.27	0.41	0.16	0.17	0.32	0.8595	0.3452	0.724	1.8654	104	109	213	36775	39852	22189	25883	0	124699	0.31	0.29	0.17	0.22	0	0.39	0.8547	0.388	0.7007	1.9116	0	94294	111406	41707	58254	5572	311233	0.3	0.39	0.13	0.19	0	0.32	0.8577	0.3818	0.7024	1.8566	14	24	38	560	662	721	898	2841	0.2	0.23	0.25	0.32	0.57	0.8894	0.2268	0.8024	1.9704	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	27476	33393	10747	17294	21733	28184	25255	26293	14302	18037	26732	35184	22354	5227	15861	17201	23073	17709	20430	26851	16608	17544	14581	32218	18272	11293	11386	29188	16728	21672	16165	25067	11129	15120	17590	14220	9837	7933	11153	11989	14059	3860	32024	11402	13460	25445	13460	21124	14807	17502	6529	5082	15402	17561	16514	17954	4486	4877	5025	6144	24614	5614	11050	6020
GCF_000208745.1	NC_030855	NC_030855.1	Theobroma cacao cultivar B97-61/B2 chromosome 6; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	8010704	8010157	4145918	4167684	1968672	26303135	0.3	0.3	0.16	0.16	0.07	0.32	0.9359	0.0027	0.9974	1.886	969	957	1926	2115025	2492028	1275507	1435288	33118	7350966	0.28	0.33	0.18	0.2	0.39	0.9111	0.1644	0.8537	1.9485	2319	870	852	1722	693760	668935	484622	573937	27	2421281	0.29	0.28	0.2	0.24	0.43	0.8728	0.2929	0.7628	1.9539	102	926020	1240160	504788	551385	3250	3225603	0.27	0.4	0.16	0.17	0.32	0.8597	0.3379	0.7283	1.8685	70	76	146	27883	29139	17040	19781	0	93843	0.32	0.28	0.17	0.23	0	0.4	0.8589	0.388	0.7025	1.9122	0	68771	80218	30142	43042	15819	237992	0.3	0.38	0.13	0.19	0.01	0.32	0.8576	0.3665	0.7102	1.861	14	22	36	515	628	688	842	2673	0.19	0.23	0.26	0.32	0.57	0.8914	0.2232	0.8063	1.9685	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	20798	23872	7813	12666	16284	19767	18284	19047	10713	14385	19789	25021	16407	4080	11803	13352	16991	13023	15383	19702	12869	12951	10995	22856	14111	8626	8421	21404	13001	16368	12447	18678	8334	11130	13119	10468	7626	6103	8817	8887	10967	3213	22860	8677	10614	18390	10110	16266	10924	13314	5012	3827	11253	12951	12556	13634	3825	3849	3965	4518	18470	4738	9395	4803
GCF_000208745.1	NC_030856	NC_030856.1	Theobroma cacao cultivar B97-61/B2 chromosome 7; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	6761515	6765203	3492058	3501796	1093914	21614486	0.31	0.31	0.16	0.16	0.05	0.32	0.9396	0.0017	0.9983	1.8993	672	730	1402	1594255	1829388	920852	1030870	25180	5400545	0.29	0.33	0.18	0.2	0.38	0.9074	0.1629	0.8548	1.9429	31904	584	649	1233	527449	513564	349081	413756	0	1803850	0.29	0.28	0.19	0.24	0.43	0.8737	0.2912	0.7638	1.9509	1	644646	821741	340704	367379	19719	2194189	0.28	0.4	0.16	0.17	0.32	0.8583	0.3358	0.7304	1.8641	74	75	149	30978	31480	18230	21234	1	101923	0.32	0.29	0.17	0.22	0	0.4	0.8591	0.377	0.7086	1.9134	0	71028	82814	31094	40608	4422	229966	0.29	0.4	0.13	0.17	0	0.31	0.8558	0.3612	0.7135	1.8458	7	2	9	139	136	172	219	666	0.21	0.2	0.26	0.33	0.59	0.8826	0.225	0.8031	1.964	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	15061	17783	6236	9415	11447	14500	12568	15313	7540	10563	16452	19693	12982	2561	9140	10393	13086	9500	11804	15519	9125	9621	8438	17754	9445	5931	6863	18193	9802	12274	9434	15207	5653	9052	10090	7532	5081	4066	6172	5683	7427	1901	18094	5891	7504	13398	6898	11823	8075	9766	3454	2265	9793	9472	8680	10105	2779	2395	2400	3146	14550	3450	6080	3437
GCF_000208745.1	NC_030857	NC_030857.1	Theobroma cacao cultivar B97-61/B2 chromosome 8; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	6022007	6028821	3169694	3150124	1222752	19593398	0.31	0.31	0.16	0.16	0.06	0.32	0.9437	0.0037	0.9963	1.8954	819	797	1616	1736416	2053244	1069721	1195781	88163	6143325	0.28	0.33	0.18	0.2	0.39	0.9126	0.1605	0.8564	1.9507	512	735	734	1469	572350	554100	412144	483479	1	2022074	0.29	0.27	0.2	0.24	0.44	0.8731	0.2932	0.7624	1.9556	4	780914	1040376	425911	468208	69790	2785199	0.27	0.4	0.16	0.17	0.33	0.8592	0.3443	0.7244	1.8684	51	46	97	23178	25956	13869	16651	0	79654	0.32	0.29	0.17	0.23	0	0.4	0.8599	0.3735	0.7105	1.9134	0	42363	49037	19668	24250	15266	150584	0.3	0.39	0.13	0.18	0.01	0.31	0.8587	0.3549	0.7178	1.8522	15	10	25	359	430	480	606	1875	0.19	0.23	0.26	0.33	0.58	0.8745	0.2637	0.779	1.9586	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17457	19890	6522	10485	13254	16902	15862	15450	9096	11417	16149	20513	13900	3541	10010	11149	14587	11254	12752	15908	10887	11331	9642	19427	11907	7191	6803	17462	10200	13703	10207	15428	7117	9036	10462	9030	6625	5437	7299	7866	9079	2860	19161	7727	8572	15474	8664	13164	8818	10892	4524	3669	9300	11432	10185	11549	2881	3352	3624	4080	14975	3625	6911	4227
GCF_000208745.1	NC_030858	NC_030858.1	Theobroma cacao cultivar B97-61/B2 chromosome 9; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	11990331	12020383	6165047	6156305	2298367	38630433	0.31	0.31	0.16	0.16	0.06	0.32	0.944	0.002	0.998	1.8927	1490	1476	2966	3247794	3878093	1982760	2224901	44368	11377916	0.28	0.33	0.18	0.2	0.39	0.9105	0.17	0.8489	1.9477	5801	1366	1328	2694	1058884	1025890	750882	888027	1	3723684	0.29	0.28	0.2	0.24	0.44	0.8724	0.2969	0.7598	1.9539	0	1469869	1983336	805495	880633	13819	5153152	0.27	0.41	0.16	0.17	0.32	0.8589	0.3478	0.7219	1.866	91	110	201	39527	42524	23988	28694	0	134733	0.32	0.29	0.17	0.23	0	0.4	0.8562	0.3958	0.6953	1.9124	8	94069	112195	42871	58970	29679	337784	0.29	0.38	0.13	0.19	0.01	0.32	0.8563	0.3895	0.6975	1.8511	24	26	50	706	914	932	1189	3741	0.19	0.24	0.25	0.32	0.57	0.8901	0.2736	0.768	1.9652	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	31915	36557	11925	19916	25119	30985	29158	28890	16911	21800	29798	37619	25953	6198	18120	19633	26782	20533	23680	29887	19338	20206	16770	35671	22202	13121	12727	32020	19723	25477	18452	28097	13125	16863	19773	16154	11655	9407	13349	14097	16756	4792	34889	13760	15819	28630	15753	24828	16490	20340	8150	6239	16852	21076	19163	21751	5657	5859	6263	7293	27792	7004	14684	7564
GCF_000208745.1	NC_030859	NC_030859.1	Theobroma cacao cultivar B97-61/B2 chromosome 10; Criollo_cocoa_genome_V2; whole genome shotgun sequence.	6858547	6881757	3511326	3503194	1067834	21822658	0.31	0.32	0.16	0.16	0.05	0.32	0.9375	0.0028	0.9972	1.8976	696	692	1388	1584692	1842201	927999	1048196	28557	5431645	0.29	0.33	0.18	0.2	0.38	0.9089	0.1734	0.8462	1.9455	4608	616	589	1205	495326	482328	340351	403705	2	1721712	0.29	0.28	0.19	0.24	0.43	0.8737	0.2933	0.7628	1.9531	0	638351	839409	343219	379300	9294	2209573	0.27	0.4	0.16	0.17	0.32	0.8597	0.3392	0.7279	1.8663	63	80	143	28751	29994	17200	19411	0	95356	0.32	0.29	0.17	0.22	0	0.39	0.8572	0.3708	0.7158	1.9081	0	66011	77303	28486	40053	6431	218284	0.29	0.4	0.13	0.18	0.01	0.31	0.8536	0.3771	0.7045	1.8434	13	8	21	282	368	377	498	1525	0.19	0.24	0.25	0.33	0.57	0.8951	0.3	0.7479	1.9604	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	14529	17267	5644	9220	11177	14469	12741	14009	7474	9694	14766	18054	11807	2601	8462	9673	12124	9375	10815	14405	8927	9245	7923	17138	9468	5876	6369	15991	9152	11537	8771	13915	5921	8340	9040	7586	5312	4198	5973	6027	7327	2069	16921	6008	7270	13179	7202	11001	8089	9692	3539	2601	8733	9315	8610	9735	2408	2507	2723	3253	13023	2971	5869	3322
NA	NC_014676	NC_014676.2	Theobroma cacao chloroplast; complete genome.	49868	51524	30207	29020	0	160619	0.31	0.32	0.19	0.18	0	0.37	0.9346	0.0364	0.9643	1.9495	47	79	126	32284	31910	19337	22795	0	106326	0.28	0.29	0.19	0.23	0.43	0.8963	0.2154	0.8127	1.9525	57	27	52	79	23171	23673	13307	15308	0	75459	0.3	0.31	0.17	0.21	0.38	0.888	0.2638	0.7823	1.9297	57	2521	2365	1133	1361	0	7380	0.34	0.32	0.15	0.19	0.34	0.9006	0.1277	0.7845	1.9178	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16	21	37	610	680	650	802	2742	0.22	0.25	0.24	0.29	0.53	0.8824	0.2143	0.816	1.9734	4	4	8	2338	1686	2146	2880	9050	0.26	0.2	0.23	0.31	0	0.54	0.9098	0.2889	0.7495	1.9784	579	340	491	498	349	350	586	1062	329	444	955	984	408	137	393	284	563	196	506	934	176	543	174	855	212	241	357	557	746	667	437	543	159	661	386	203	158	183	183	222	128	118	988	169	76	476	319	461	222	445	174	151	795	396	169	293	19	115	142	318	707	52	24	341