GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_N Number of 'N' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands	bp_nc_intron_A Number of 'A' bases in total introns between ncRNA	bp_nc_intron_T Number of 'T' bases in total introns between ncRNA	bp_nc_intron_C Number of 'C' bases in total introns between ncRNA	bp_nc_intron_G Number of 'G' bases in total introns between ncRNA	bp_nc_intron_tot Total bases in total introns between ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_029867415.1	NC_081180	NC_081180.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG1; Vvil1.0; whole genome shotgun sequence.	81420938	81428005	44757124	44656673	62500	252325240	0.32	0.32	0.18	0.18	0.35	0.9355	0.0012	0.9988	1.9379	4281	4376	8657	8319425	9271402	4700186	5240572	2300	27533885	0.3	0.33	0.17	0.2	0.37	0.9031	0.1904	0.8349	1.9352	17406	3617	3664	7281	2744704	2602515	1723731	2095135	9166085	0.3	0.28	0.19	0.23	0.42	0.872	0.3117	0.7505	1.9415	18	3437115	4161973	1794796	1913250	1900	11309034	0.29	0.41	0.14	0.16	0.3	0.8473	0.3582	0.7171	1.8354	549	609	1158	378210	430339	217908	249563	1276020	0.3	0.32	0.17	0.21	0.38	0.8639	0.3506	0.726	1.9128	0	297401	391594	143065	176514	1008574	0.27	0.43	0.13	0.16	0.3	0.8411	0.4336	0.6664	1.8161	82	74	156	2232	2846	2786	3646	11510	0.19	0.25	0.24	0.32	0.56	0.8906	0.2718	0.771	1.968	0	1	1	32	29	28	30	119	0.27	0.24	0.24	0.25	0	0.49	0.8929	0.0837	0.9198	1.9982	79486	92171	30700	52403	51344	71240	64484	80266	35416	51990	85770	102080	60423	16308	48158	54643	65237	49545	56559	79840	35225	55331	38575	96830	41484	31499	32563	80349	55293	61636	46460	66981	28381	47979	52651	39493	28544	18244	32140	25893	31050	11987	104464	25650	31246	78662	29140	63452	44116	51802	22251	17835	47477	46879	40662	44740	14886	13499	19075	19739	73943	19563	32372	18897
GCF_029867415.1	NC_081181	NC_081181.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG2; Vvil1.0; whole genome shotgun sequence.	74510278	74422985	40843282	40773318	54000	230603863	0.32	0.32	0.18	0.18	0.35	0.9274	0.0014	0.9986	1.9375	3881	3915	7796	7452681	8308849	4136056	4645423	1100	24544109	0.3	0.33	0.17	0.2	0.37	0.9019	0.1904	0.8349	1.9321	20582	3201	3253	6454	2432681	2310527	1499028	1818941	8061177	0.3	0.29	0.18	0.23	0.41	0.8716	0.3087	0.7524	1.9408	452	3141195	3781128	1619124	1734268	1000	10276715	0.29	0.41	0.14	0.16	0.3	0.8472	0.3523	0.7211	1.833	575	564	1139	362775	413471	205701	238158	1220105	0.3	0.32	0.17	0.21	0.38	0.8654	0.3505	0.7258	1.9138	1	295341	387593	149928	181550	1014412	0.27	0.43	0.13	0.16	0.3	0.8405	0.4371	0.6647	1.8133	83	89	172	2604	3054	3139	3983	12780	0.2	0.24	0.25	0.31	0.56	0.8889	0.2402	0.7922	1.9728	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	70953	81611	27261	46130	43731	61792	55513	72540	30754	45753	77089	89006	54716	13612	42171	47651	57888	42683	50402	73666	29424	47252	33054	84586	35047	26923	28865	70335	49676	54745	39568	58528	23992	42989	47416	33859	25450	15690	28015	21652	26499	10231	93647	21431	27631	69433	24775	56169	40138	46224	18848	14486	43438	41296	35386	39688	13342	11271	16132	16722	66780	18248	29488	16462
GCF_029867415.1	NC_081182	NC_081182.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG3; Vvil1.0; whole genome shotgun sequence.	70731399	70705374	38885235	38934014	56900	219312922	0.32	0.32	0.18	0.18	0.35	0.9374	0.0008	0.9992	1.9383	3811	3918	7729	7609075	8416330	4235054	4740104	1800	25002363	0.3	0.33	0.17	0.2	0.37	0.9025	0.1871	0.8375	1.9331	26354	3126	3145	6271	2479391	2356658	1535048	1855474	8226571	0.3	0.28	0.19	0.23	0.41	0.8723	0.3083	0.7529	1.9418	27	3118238	3713784	1611682	1733264	1700	10178668	0.29	0.41	0.14	0.16	0.3	0.8478	0.3538	0.7201	1.8355	569	607	1176	405216	456064	227886	262651	1351817	0.3	0.33	0.17	0.2	0.37	0.8654	0.3379	0.7337	1.9096	24	261642	351811	128894	152856	895203	0.27	0.43	0.13	0.16	0.29	0.8377	0.4323	0.6674	1.8095	87	111	198	2921	3540	3725	4607	14793	0.2	0.24	0.25	0.31	0.57	0.8846	0.261	0.7794	1.9648	16	31	47	1282	1321	1439	1550	5592	0.23	0.24	0.26	0.28	0	0.53	0.903	0.0644	0.9388	1.9947	70914	81815	28260	46514	44672	64174	55875	73516	32205	47115	79236	93602	54547	14484	42818	49023	59402	43899	50523	75111	30220	47832	34454	89118	35115	28026	30511	73648	50419	55107	40850	62017	25044	44160	47299	35755	24623	16432	28973	22373	26721	10624	97697	22222	27119	69648	25642	55753	40184	45820	19421	14982	45017	42767	35588	40587	12307	11596	16340	17053	67863	16586	26898	17185
GCF_029867415.1	NC_081183	NC_081183.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG4; Vvil1.0; whole genome shotgun sequence.	63422993	63486873	35198119	35274565	55600	197438150	0.32	0.32	0.18	0.18	0.36	0.9274	0.0016	0.9984	1.9401	3049	2987	6036	6155477	6762011	3384975	3800339	1900	20104702	0.3	0.33	0.17	0.2	0.37	0.9022	0.188	0.8371	1.9313	17350	2395	2418	4813	1857838	1753232	1138103	1385718	6134891	0.3	0.29	0.18	0.23	0.41	0.8713	0.3109	0.7512	1.9402	21	2646163	3101299	1361303	1461787	1600	8572152	0.29	0.41	0.14	0.16	0.3	0.8477	0.3459	0.7252	1.8343	479	443	922	321613	356338	175252	207417	1060620	0.3	0.33	0.17	0.21	0.37	0.8627	0.3599	0.721	1.905	1	289172	363592	138224	170944	961932	0.27	0.43	0.13	0.16	0.29	0.8398	0.4376	0.6644	1.8107	36	38	74	1038	1314	1379	1734	5465	0.19	0.24	0.25	0.32	0.57	0.8891	0.2667	0.7741	1.964	113	71	184	4967	5002	5679	6245	21893	0.23	0.23	0.26	0.29	0	0.54	0.9039	0.0542	0.9485	1.993	54887	62203	21234	34639	32991	46235	41180	55676	23153	35384	58910	68522	41029	10821	32183	36420	42455	32692	38043	54678	23254	35860	25092	63515	26565	20447	22928	54542	37739	41197	30999	44430	18564	33804	36436	26096	18611	11679	21926	16588	20062	7788	71517	16370	20894	52155	18862	42755	30274	34238	14588	11007	32891	31394	27267	30443	10297	8714	12528	12310	51004	13981	22161	12319
GCF_029867415.1	NC_081184	NC_081184.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG5; Vvil1.0; whole genome shotgun sequence.	56179031	56188465	30882356	30951254	43201	174244307	0.32	0.32	0.18	0.18	0.35	0.9289	0.0012	0.9988	1.9383	3230	3195	6425	6302666	7008239	3513821	3930807	1200	20756733	0.3	0.33	0.17	0.2	0.37	0.9024	0.1909	0.8342	1.9333	10239	2654	2687	5341	2051219	1954559	1287803	1537642	6831223	0.3	0.29	0.19	0.23	0.41	0.8715	0.3106	0.7513	1.9412	5	2693094	3231078	1386479	1491306	1100	8803057	0.29	0.41	0.14	0.16	0.3	0.8485	0.3494	0.7228	1.8367	462	431	893	291420	328318	162143	192247	974128	0.3	0.32	0.17	0.21	0.38	0.8668	0.3414	0.7314	1.9134	64	226736	294441	110778	137343	769298	0.27	0.43	0.14	0.17	0.3	0.8437	0.4316	0.6683	1.8237	90	60	150	2257	2628	2822	3597	11304	0.2	0.23	0.25	0.32	0.57	0.8788	0.2568	0.7803	1.9666	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	59977	68473	23097	39063	37671	51322	47677	61112	26566	37839	64809	75774	45659	11713	35688	40857	48987	35706	42458	61464	25599	40101	29743	71031	29872	23586	25518	60098	41883	45990	34481	50873	21159	36281	39829	29060	20740	13597	23609	18986	22972	9053	78543	18546	23409	58851	21281	47544	33562	38281	15533	12531	36093	36431	29570	35210	10749	9527	13376	14232	56034	14451	23673	13707
GCF_029867415.1	NC_081185	NC_081185.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG6; Vvil1.0; whole genome shotgun sequence.	53757899	53785711	29442892	29482562	42200	166511264	0.32	0.32	0.18	0.18	0.35	0.9276	0.0009	0.9991	1.9374	2935	2884	5819	5502476	6136865	3068416	3419838	1100	18128695	0.3	0.33	0.17	0.2	0.37	0.9016	0.1933	0.8327	1.9316	5184	2393	2398	4791	1787209	1728347	1112817	1341542	5969915	0.3	0.29	0.19	0.23	0.41	0.872	0.3077	0.7535	1.9409	4	2330892	2779008	1199266	1279234	1100	7589500	0.29	0.41	0.14	0.16	0.3	0.8474	0.3492	0.7228	1.8326	447	413	860	271101	306721	153274	176823	907919	0.3	0.33	0.17	0.21	0.38	0.8655	0.3406	0.732	1.9108	6	219591	285956	111710	131554	748811	0.27	0.43	0.14	0.16	0.3	0.8402	0.4341	0.6663	1.8119	78	64	142	2148	2594	2589	3328	10659	0.2	0.24	0.24	0.31	0.56	0.8826	0.2505	0.7853	1.9702	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	51835	59302	20621	34029	31876	44899	41113	54655	22971	33781	57006	64982	39847	10319	31588	35763	43385	32006	37714	55715	22366	35229	25204	62983	24941	19975	22079	53343	37563	39692	29792	44972	18190	31992	35022	25390	18402	11372	20634	16255	19666	7441	68170	15836	19953	52406	18462	41140	29327	34577	14139	10485	32851	30595	25971	29588	9383	8526	11925	12442	48384	12187	20610	11936
GCF_029867415.1	NC_081186	NC_081186.1	Vicia villosa cultivar HV-30 ecotype Madison; WI linkage group LG7; Vvil1.0; whole genome shotgun sequence.	44467984	44449070	24596633	24589512	32100	138135299	0.32	0.32	0.18	0.18	0.36	0.9261	0.0004	0.9996	1.9393	2357	2433	4790	4655738	5172556	2562668	2889949	500	15281411	0.3	0.33	0.17	0.2	0.37	0.9022	0.1859	0.8383	1.9308	10776	2031	2081	4112	1617174	1539962	985033	1192819	5334988	0.3	0.29	0.18	0.23	0.41	0.8713	0.3045	0.7556	1.9394	8	1930848	2320560	983879	1057211	500	6292998	0.29	0.41	0.14	0.16	0.3	0.8466	0.3443	0.7262	1.8302	274	306	580	204055	228814	117360	137797	688026	0.3	0.32	0.17	0.21	0.38	0.8653	0.3618	0.7185	1.9111	0	157351	210673	74499	96744	539267	0.27	0.43	0.13	0.17	0.3	0.843	0.4346	0.6665	1.8179	40	37	77	1134	1361	1430	1756	5681	0.2	0.24	0.25	0.31	0.56	0.8842	0.23	0.8023	1.9703	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	47277	52230	18222	30947	28248	39906	35671	48893	20443	29272	52630	60165	36504	9133	28480	31949	38314	28772	33193	49267	18941	31036	21611	55628	22429	17473	19944	47517	33101	36176	26414	40403	16112	29330	31750	22521	16001	9904	18444	13869	17373	6551	62829	13912	17908	45890	16048	37073	26300	30670	12391	9458	29503	27040	22909	26092	8468	7404	10470	10793	44276	11963	19753	10609