GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
NA	NC_010004	NC_010004.1	Bigelowiella natans nucleomorph chromosome 1; complete sequence.	50561	50856	19710	19460	2	140589	0.36	0.36	0.14	0.14	0.28	0.8415	0.0093	0.9908	1.8535	58	62	120	47772	42100	16456	17997	2	124327	0.39	0.34	0.13	0.14	0.27	0.8654	0.1859	0.8378	1.81	101	51	54	105	42391	37104	13272	13515	2	106284	0.41	0.35	0.12	0.13	0.25	0.8388	0.2872	0.7702	1.77	101	2260	2311	308	815	5694	0.4	0.41	0.05	0.14	0	0.2	0.6983	0.7575	0.5246	1.5893	0	1	1	41	48	16	15	120	0.34	0.4	0.13	0.12	0	0.26	0.8257	0.1109	0.8958	1.8207	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	4	8	144	154	138	148	584	0.25	0.26	0.24	0.25	0.49	0.8823	0.1185	0.8902	1.9916	3	3	6	2892	2431	2712	3485	11520	0.26	0.21	0.23	0.3	0.53	0.9012	0.2263	0.7983	1.986	668	713	486	677	266	270	322	1833	199	261	2322	1018	805	145	542	666	855	145	577	2046	165	347	165	891	214	189	576	557	1373	398	580	679	150	1594	604	198	142	68	465	79	235	39	3302	116	164	566	104	788	414	492	193	51	1793	276	164	265	213	33	59	123	721	610	212	159
NA	NC_010005	NC_010005.1	Bigelowiella natans nucleomorph chromosome 2; complete sequence.	48969	47269	18807	19097	0	134142	0.37	0.35	0.14	0.14	0.28	0.8425	0.0253	0.975	1.8588	67	52	119	45972	38543	15897	17220	0	117632	0.39	0.33	0.13	0.15	0.28	0.8676	0.2303	0.8021	1.8169	0	59	44	103	40295	33417	12682	12590	0	98984	0.42	0.33	0.12	0.13	0.25	0.8301	0.3233	0.7458	1.7703	0	2550	2398	334	940	6222	0.41	0.39	0.05	0.15	0	0.2	0.7135	0.7942	0.503	1.5916	0	2	2	81	109	58	46	294	0.28	0.37	0.2	0.16	0	0.35	0.8747	0.2627	0.7682	1.9237	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	3	8	153	185	109	156	603	0.25	0.31	0.18	0.26	0.44	0.8824	0.2762	0.7653	1.9668	3	3	6	2893	2434	2714	3488	11529	0.26	0.21	0.23	0.3	0.53	0.9013	0.226	0.7985	1.986	623	709	455	607	266	231	313	1670	200	202	2068	978	749	127	540	697	752	116	549	1771	156	294	186	834	200	191	594	465	1285	377	532	542	147	1484	575	196	150	57	445	90	254	31	3124	107	164	464	91	744	311	434	190	67	1593	259	181	235	230	48	48	96	733	685	207	175
NA	NC_010006	NC_010006.1	Bigelowiella natans nucleomorph chromosome 3; complete sequence.	34837	34584	14372	14343	0	98136	0.35	0.35	0.15	0.15	0.29	0.9196	0.0047	0.9954	1.8721	44	41	85	32548	28034	11776	12869	0	85227	0.39	0.33	0.13	0.14	0.28	0.8655	0.19	0.8332	1.8127	0	37	38	75	27704	23749	8755	8663	0	68871	0.41	0.34	0.12	0.13	0.25	0.8371	0.2861	0.7694	1.7745	0	1860	1779	223	667	4529	0.41	0.39	0.05	0.15	0	0.2	0.7059	0.8131	0.4911	1.5796	1	0	1	30	27	21	22	100	0.3	0.27	0.21	0.22	0	0.43	0.9206	0.0759	0.9273	1.9845	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	0	3	60	51	55	45	211	0.28	0.24	0.26	0.21	0.47	0.8929	0.1985	0.8244	1.9866	3	3	6	2894	2428	2722	3472	11516	0.26	0.21	0.23	0.3	0.53	0.9147	0.2248	0.7994	1.9862	449	459	303	436	189	171	194	1202	151	148	1395	666	531	93	385	445	535	85	376	1297	121	199	146	540	132	115	421	334	875	247	372	406	90	995	362	132	100	46	273	60	156	20	2195	56	117	365	58	528	249	356	103	47	1176	160	116	155	131	30	37	87	518	454	167	137
NA	NC_008408	NC_008408.1	Bigelowiella natans plastid; complete genome.	23475	24727	10122	10742	100	69166	0.34	0.36	0.15	0.16	0.3	0.9244	0.0557	0.9458	1.8827	53	45	98	20233	20552	8460	10955	0	60200	0.31	0.33	0.16	0.2	0.36	0.8776	0.2349	0.7977	1.8989	17	33	28	61	16894	17670	6369	8057	0	48990	0.34	0.36	0.13	0.17	0.3	0.8675	0.2477	0.7885	1.8529	17	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	17	14	31	551	644	509	636	2340	0.23	0.28	0.22	0.27	0.49	0.891	0.215	0.8118	1.9806	3	3	6	2788	2238	1582	2262	8870	0.33	0.28	0.17	0.23	0.4	0.9119	0.2068	0.8181	1.9447	332	153	325	394	325	115	465	964	22	244	881	593	405	48	277	144	447	24	211	806	11	594	10	560	68	17	89	74	554	423	128	251	28	335	432	69	74	10	88	20	22	10	989	31	10	623	52	300	140	246	60	41	1277	331	17	221	5	5	27	250	489	56	0	118