GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	n_ncRNA_pos Number of ncRNA in the positive strand	n_ncRNA_neg Number of ncRNA in the negative strand	n_ncRNA_tot Total number of ncRNA in the chromosome	bp_ncRNA_A Number of 'A' bases in total ncRNA	bp_ncRNA_T bp_ncRNA_T	bp_ncRNA_C Number of 'C' bases in total ncRNA	bp_ncRNA_G Number of 'G' bases in total ncRNA	bp_ncRNA_tot Total bases in total ncRNA	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_N Number of 'N' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
NA	NC_006980	NC_006980.1	Cryptosporidium parvum Iowa II chromosome 1; whole genome shotgun sequence.	309197	301678	130736	134047	1	875659	0.35	0.34	0.15	0.15	0	0.3	0.9238	0.0248	0.9755	1.8841	207	184	391	244442	207702	95544	115138	0	662826	0.36	0.31	0.15	0.18	0.33	0.8898	0.2116	0.8172	1.8939	1	176	149	325	218286	185223	84630	101577	0	589716	0.37	0.31	0.15	0.18	0.32	0.8887	0.2195	0.8117	1.891	1	474	627	135	150	1386	0.34	0.45	0.09	0.11	0.2	0.7829	0.4522	0.6648	1.6812	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	1	4	5	70	96	91	115	372	0.19	0.26	0.24	0.31	0.55	0.8952	0.27	0.7648	1.9757	0	1	1	228	217	111	142	0	698	0.33	0.31	0.16	0.2	0	0.36	0.8975	0.1472	0.8667	1.9405	3748	4883	2956	3851	2921	3661	2539	10197	1496	1818	12699	10271	6058	551	3879	3432	5442	917	2376	7403	798	2460	989	8117	1613	842	2130	3529	5483	4264	1944	4199	846	5326	3829	2078	828	544	1736	601	1866	233	10504	922	1159	4273	1029	4893	2224	2741	907	371	7560	2238	1431	3357	101	106	375	639	5534	266	88	491
NA	NC_006981	NC_006981.1	Cryptosporidium parvum Iowa II chromosome 2; whole genome shotgun sequence.	342271	344056	149250	150143	104	985824	0.35	0.35	0.15	0.15	0	0.3	0.6034	0.0056	0.9944	1.8858	223	221	444	273318	233220	107911	129338	0	743787	0.36	0.31	0.15	0.18	0.33	0.888	0.218	0.8116	1.8937	1532	181	192	373	244405	208392	96135	114684	0	663616	0.37	0.31	0.15	0.18	0.33	0.8875	0.2233	0.8085	1.8914	0	651	738	193	233	1815	0.36	0.42	0.1	0.12	0.22	0.8055	0.3527	0.7312	1.7236	2	1	3	92	88	49	60	289	0.32	0.3	0.17	0.21	0	0.38	0.8648	0.1711	0.8493	1.9471	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	49	53	57	71	230	0.21	0.23	0.25	0.31	0.56	0.8967	0.1752	0.8436	1.9814	3	0	3	1745	1889	867	742	0	5243	0.38	0.32	0.15	0.15	0	0.3	0.7844	0.2621	0.7782	1.8638	4204	5339	3380	4373	3461	3991	2826	11395	1680	1991	14167	11019	7047	612	4375	3779	6282	1083	2589	8500	925	2956	1053	8899	1984	1036	2563	3935	6045	4911	2260	4534	841	6320	4447	2252	978	578	1978	683	2070	230	11480	1172	1297	4661	1297	5715	2463	3110	1016	456	8439	2549	1631	3836	117	111	468	772	6113	279	128	500
NA	NC_006982	NC_006982.1	Cryptosporidium parvum Iowa II chromosome 3; whole genome shotgun sequence.	383228	378101	167673	169272	500	1098774	0.35	0.34	0.15	0.15	0	0.31	0.5959	0.0115	0.9886	1.8892	221	222	443	308974	269070	125583	146025	0	849652	0.36	0.31	0.15	0.18	0.33	0.8894	0.2198	0.8117	1.8923	15	177	175	352	269564	234761	108888	126387	0	739600	0.37	0.31	0.15	0.18	0.32	0.8895	0.2154	0.815	1.8893	1	258	240	79	105	682	0.36	0.35	0.13	0.16	0.28	0.8058	0.2913	0.7795	1.817	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	3	6	75	104	121	137	437	0.17	0.24	0.28	0.31	0.59	0.8855	0.2335	0.8005	1.9591	1	2	3	99	69	90	102	0	360	0.28	0.19	0.25	0.28	0	0.53	0.8809	0.2411	0.7897	1.9845	4602	6013	3696	5199	3683	4513	3079	12981	1984	2205	15592	12212	7722	756	4748	4623	7183	1133	3256	9532	1016	3183	1259	9864	2268	1302	2920	4444	7258	5395	2652	5087	1022	6538	4985	2506	1006	660	2441	810	2418	214	12410	1204	1483	5391	1381	5960	2897	3328	1140	471	9100	2964	1788	4345	102	126	448	703	6346	213	92	561
NA	NC_006983	NC_006983.1	Cryptosporidium parvum Iowa II chromosome 4; whole genome shotgun sequence.	393584	388848	158700	163017	214	1104363	0.36	0.35	0.14	0.15	0	0.29	0.578	0.0195	0.9807	1.8703	244	218	462	312407	259293	113461	141326	3	826490	0.37	0.31	0.14	0.17	0.31	0.8813	0.2354	0.7993	1.8732	170	195	176	371	271496	223495	97485	122144	3	714623	0.38	0.31	0.14	0.17	0.31	0.8793	0.2475	0.7908	1.8692	67	514	557	118	146	1335	0.38	0.42	0.09	0.11	0.2	0.7976	0.395	0.7032	1.6741	1	2	3	100	118	45	46	309	0.32	0.38	0.15	0.15	0	0.3	0.8402	0.1609	0.8561	1.8693	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	4	8	109	153	146	190	598	0.18	0.25	0.24	0.32	0.56	0.8651	0.3203	0.7326	1.9621	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4644	5756	3512	4666	3561	4458	3098	12654	1578	1968	17160	13125	7467	616	4889	3978	6482	1055	2604	8692	853	3181	997	10184	1925	990	2481	4204	6885	5291	2185	4585	848	6734	4645	2132	989	549	1922	699	2083	201	13403	1074	1188	5015	1222	6207	2522	3228	1036	430	9456	2552	1599	4078	104	104	399	691	6447	256	112	535
NA	NC_006984	NC_006984.1	Cryptosporidium parvum Iowa II chromosome 5; whole genome shotgun sequence.	382037	386184	153486	157082	1215	1080004	0.35	0.36	0.14	0.15	0	0.29	0.6264	0.017	0.9832	1.8655	245	224	469	300880	249199	108280	133561	12	791932	0.38	0.31	0.14	0.17	0.31	0.8784	0.2451	0.7916	1.8684	8	192	186	378	259248	215316	93265	114752	10	682591	0.38	0.31	0.14	0.17	0.31	0.8776	0.2491	0.7891	1.8673	0	268	277	85	82	712	0.37	0.39	0.12	0.12	0.23	0.7657	0.4695	0.6406	1.7316	4	0	4	138	144	35	50	367	0.37	0.39	0.1	0.14	0	0.23	0.8366	0.2429	0.7986	1.7671	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	0	5	68	100	87	114	369	0.18	0.27	0.24	0.31	0.54	0.8839	0.3226	0.7253	1.9714	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4271	5679	3280	4460	3264	3941	2998	11957	1530	2036	16579	12100	7128	532	4643	3752	6078	970	2383	8576	735	3041	869	9940	1754	976	2413	3960	6585	4929	2080	4263	785	6615	4521	2041	891	535	1762	624	1943	162	12780	986	1178	4689	1128	5811	2705	3344	850	339	9464	2766	1477	4065	92	110	400	665	6197	257	85	509
NA	NC_006985	NC_006985.1	Cryptosporidium parvum Iowa II chromosome 6; whole genome shotgun sequence.	463957	462987	200328	200998	2610	1330880	0.35	0.35	0.15	0.15	0	0.3	0.5959	0.0027	0.9973	1.883	291	266	557	365161	312674	145107	172168	2	995112	0.36	0.31	0.15	0.18	0.33	0.8853	0.2215	0.8102	1.8879	0	239	225	464	316118	270847	125012	147633	2	859612	0.37	0.31	0.15	0.18	0.32	0.884	0.2244	0.8083	1.8858	0	1608	1859	517	646	4630	0.36	0.42	0.1	0.12	0.22	0.7968	0.3382	0.7349	1.7145	1	2	3	89	94	40	53	276	0.31	0.35	0.15	0.19	0	0.34	0.8648	0.3686	0.7005	1.8887	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	3	8	108	153	149	192	602	0.18	0.25	0.25	0.32	0.57	0.8874	0.2991	0.7479	1.9639	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5363	7086	4222	5831	4197	5330	3901	14776	2219	2621	18683	14341	9267	699	5582	4831	8172	1342	3457	10643	1086	3951	1419	11829	2558	1418	3161	5000	8023	6591	2916	6095	1219	7768	5654	2789	1238	760	2560	909	2449	247	14582	1334	1551	6340	1479	7344	3357	4315	1188	445	10671	3435	1993	5245	171	137	526	920	8047	403	176	628
NA	NC_006986	NC_006986.1	Cryptosporidium parvum Iowa II chromosome 7; whole genome shotgun sequence.	431157	440635	208616	198038	3	1278449	0.34	0.34	0.16	0.15	0	0.32	0.6315	0.0369	0.9639	1.9021	264	306	570	359894	310619	152528	179631	3	1002675	0.36	0.31	0.15	0.19	0.34	0.8928	0.2148	0.8146	1.9056	0	205	250	455	316695	273735	133897	155944	0	880271	0.36	0.31	0.15	0.18	0.33	0.8927	0.2121	0.8165	1.9037	0	758	886	257	290	2191	0.36	0.44	0.1	0.11	0.21	0.7597	0.4084	0.6915	1.6883	0	6	6	197	203	96	102	598	0.33	0.34	0.16	0.17	0	0.33	0.857	0.1918	0.8392	1.9021	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	2	1	3	44	54	58	71	227	0.19	0.24	0.26	0.31	0.57	0.8807	0.2828	0.7573	1.9694	7	0	7	835	862	610	497	3	2807	0.29	0.28	0.22	0.21	0	0.43	0.883	0.1925	0.8321	1.9505	5466	7756	4350	6131	4578	5931	4012	14727	2605	2845	16431	14630	8911	787	5598	5404	8586	1484	3940	10755	1319	3747	1732	11674	2753	1501	3366	5367	7679	6919	3428	6639	1368	7511	5672	3170	1405	922	2781	996	2802	312	14629	1417	1771	6653	1695	7559	3552	3917	1388	597	10071	3761	2195	5478	136	160	547	962	7925	257	85	670
NA	NC_006987	NC_006987.1	Cryptosporidium parvum Iowa II chromosome 8; whole genome shotgun sequence.	471913	458443	197294	206810	10022	1344482	0.35	0.34	0.15	0.15	0.01	0.3	0.5803	0.038	0.9627	1.8812	289	262	551	366034	308466	141341	175663	6	991510	0.37	0.31	0.15	0.18	0.33	0.8851	0.2386	0.7972	1.8882	10	231	214	445	317447	267105	121699	150724	1	856976	0.37	0.31	0.14	0.18	0.32	0.8843	0.2419	0.7948	1.8853	0	379	516	117	120	1132	0.33	0.46	0.09	0.11	0.21	0.7974	0.447	0.6617	1.688	1	0	1	52	39	8	10	109	0.48	0.36	0.07	0.09	0	0.17	0.7642	0.254	0.775	1.6327	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	2	7	98	131	129	162	520	0.19	0.25	0.25	0.31	0.56	0.882	0.2664	0.7753	1.966	1	0	1	375	343	185	248	5	1156	0.32	0.3	0.16	0.21	0	0.37	0.9187	0.1901	0.8303	1.9464	5656	7243	4499	5924	4323	5598	3967	14191	2024	2375	18319	15049	8870	686	5903	4471	8379	1395	3133	10353	990	4054	1239	12258	2490	1267	2895	5177	7929	7123	2643	5906	1072	7576	5683	2526	1136	719	2372	853	2372	230	14742	1293	1441	6175	1560	7533	3081	4106	1155	480	11199	3510	2083	5411	114	126	512	950	8286	287	92	633