GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000002435.2	NC_051856	NC_051856.1	Giardia intestinalis strain WB C6 chromosome 1; whole genome shotgun sequence.	374335	376758	367177	367168	0	1485438	0.25	0.25	0.25	0.25	0	0.49	0.9602	0.0032	0.9968	1.9999	336	373	709	336638	304823	311812	301780	1255053	0.26	0.24	0.25	0.25	0.5	0.9175	0.1499	0.8664	1.9873	122	330	368	698	333938	302484	307893	297901	1242216	0.27	0.24	0.25	0.25	0.5	0.9181	0.148	0.8679	1.9887	122	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	4	7	97	121	141	188	547	0.18	0.22	0.26	0.34	0.6	0.8887	0.3031	0.7439	1.948	3	0	3	646	398	1577	1627	4248	0.15	0.08	0.4	0.38	0.78	0.8395	0.3997	0.7053	1.7324	9070	14863	4224	6456	10562	15050	8383	8349	6280	2584	8072	9725	5746	4799	4901	8815	9767	6394	6448	7686	8288	4213	8540	11446	10098	6435	5856	5954	6922	6249	7889	10523	6631	7248	8431	11342	5432	4430	6866	8552	7270	4443	6804	6137	6180	6849	5112	4424	4176	4500	4131	5344	4130	5256	4008	5543	238	3055	3631	3338	6748	257	203	2776
GCF_000002435.2	NC_051857	NC_051857.1	Giardia intestinalis strain WB C6 chromosome 2; whole genome shotgun sequence.	387614	387466	380782	383673	0	1539535	0.25	0.25	0.25	0.25	0	0.5	0.9604	0.004	0.996	2	343	329	672	341579	315282	325415	311646	1293922	0.26	0.24	0.25	0.25	0.5	0.9172	0.143	0.8726	1.9858	99	334	321	655	339978	314191	321703	307831	1283703	0.26	0.24	0.25	0.25	0.5	0.9185	0.1387	0.8756	1.9891	99	73	65	70	47	255	0.35	0.21	0.29	0.15	0	0.45	0.8874	0.5702	0.5981	1.8976	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	3	9	114	154	174	213	655	0.17	0.24	0.27	0.33	0.59	0.8826	0.2542	0.7813	1.9559	3	5	8	1414	872	3468	3555	9309	0.15	0.07	0.4	0.38	0.78	0.8364	0.4144	0.6974	1.7248	9599	15212	4289	6738	10934	15125	8721	8589	6324	2659	8245	9381	5852	5440	4958	9148	9806	6744	7129	8080	8797	4470	9366	11450	10404	6663	5870	5941	7309	6556	8651	11145	7225	7484	8598	11920	5713	4811	7305	8707	7822	4632	6469	6598	6400	7213	5339	4185	4230	4447	4323	5572	3944	5391	4029	5758	215	3136	3785	3373	6575	227	216	2663
GCF_000002435.2	NC_051858	NC_051858.1	Giardia intestinalis strain WB C6 chromosome 3; whole genome shotgun sequence.	494881	497148	486263	486208	9347	1973847	0.25	0.25	0.25	0.25	0	0.49	0.9595	0.0023	0.9977	1.9973	408	409	817	438998	405042	415451	397096	1656587	0.26	0.24	0.25	0.25	0.5	0.919	0.1391	0.8752	1.9887	74	401	404	805	437714	403824	414152	395762	1651452	0.26	0.24	0.25	0.25	0.5	0.9192	0.1383	0.8758	1.989	74	29	35	39	39	142	0.25	0.23	0.26	0.25	0	0.52	0.8854	0.2611	0.7807	1.9704	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	4	8	101	139	162	201	603	0.17	0.23	0.27	0.33	0.6	0.8905	0.2734	0.7688	1.9499	2	1	3	84	65	106	105	360	0.23	0.18	0.29	0.29	0.59	0.8809	0.1323	0.8823	1.9735	12179	19376	5643	8897	14141	20072	11674	11047	8350	3355	10486	12375	7588	6865	6517	11655	12793	8683	8821	10175	11291	5483	11863	14607	13571	8475	7647	7981	9280	8272	10847	14473	9144	9314	11199	14880	7218	6326	9421	11272	9937	5947	8483	8315	8193	9251	6819	5410	5410	5845	5539	7143	5264	7124	5172	7442	296	4032	4790	4158	8559	295	220	3583
GCF_000002435.2	NC_051859	NC_051859.1	Giardia intestinalis strain WB C6 chromosome 4; whole genome shotgun sequence.	704186	697032	680752	679031	0	2761001	0.26	0.25	0.25	0.25	0	0.49	0.9604	0.0064	0.9937	1.9998	599	648	1247	610412	563860	572614	548886	2295772	0.26	0.24	0.25	0.25	0.5	0.9164	0.1473	0.8687	1.9843	283	588	637	1225	609816	563352	571486	547652	2292306	0.26	0.24	0.25	0.25	0.5	0.9171	0.1463	0.8697	1.985	283	27	30	29	11	97	0.27	0.31	0.3	0.11	0	0.42	0.7864	0.5854	0.5769	1.8984	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	9	17	223	279	332	433	1267	0.18	0.22	0.26	0.34	0.6	0.8831	0.2453	0.7865	1.9527	3	1	4	346	199	767	790	2102	0.18	0.1	0.37	0.36	0.72	0.8314	0.3749	0.7225	1.7963	16657	26519	7839	12569	19596	27356	15610	15924	11338	4986	15065	17548	10809	9424	9017	16150	17595	11561	12503	14548	15031	7518	16284	20717	18161	11608	10942	10884	12845	11197	14912	19658	12885	13165	15468	20750	10155	8468	12475	15619	13436	8206	12104	11700	11751	13073	9627	7692	7785	8127	7606	9977	7592	9852	6947	10005	446	5885	6801	6020	12248	422	385	5058
GCF_000002435.2	NC_051860	NC_051860.1	Giardia intestinalis strain WB C6 chromosome 5; whole genome shotgun sequence.	911373	913494	899050	899373	395364	4018654	0.23	0.23	0.22	0.22	0.1	0.45	0.9571	0.0013	0.9987	1.9379	802	800	1602	793637	719168	746170	720072	2979047	0.26	0.23	0.25	0.25	0.5	0.9162	0.145	0.8706	1.9852	115	787	785	1572	792935	718529	744970	718741	2975175	0.26	0.24	0.25	0.25	0.5	0.9169	0.1431	0.872	1.986	115	8	12	13	8	41	0.2	0.29	0.32	0.2	0	0.51	0.8305	0.219	0.3205	1.9643	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	12	8	20	268	341	373	492	1474	0.18	0.23	0.25	0.34	0.59	0.8587	0.3056	0.7503	1.9417	3	6	9	414	274	804	821	2313	0.2	0.15	0.33	0.32	0.65	0.8622	0.2121	0.8299	1.8988	21694	34765	10105	16026	25841	35783	20363	19800	14367	6355	19432	22761	13500	12569	11650	21254	22359	15089	15914	17999	19317	9816	21272	26607	24159	15208	13401	13677	16657	15081	19425	25047	16583	16960	19762	27899	13180	11227	16335	20798	17833	11188	15621	15641	15356	16297	12736	10381	10041	10355	9928	13067	9398	12823	9851	13256	554	7503	8844	7804	15543	521	513	6632