Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of āGā + āCā nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NA | NC_009977 | NC_009977.1 | Hemiselmis andersenii chromosome 1; complete sequence; nucleomorph. | 76762 | 76950 | 26823 | 26989 | 0 | 207524 | 0.37 | 0.37 | 0.13 | 0.13 | 0 | 0.26 | 0.9109 | 0.0043 | 0.9957 | 1.8257 | 95 | 87 | 182 | 69928 | 62589 | 23005 | 26193 | 0 | 181715 | 0.38 | 0.33 | 0.13 | 0.15 | 0 | 0.29 | 0.8628 | 0.1887 | 0.8358 | 1.8313 | 21 | 84 | 78 | 162 | 66234 | 59149 | 20651 | 23004 | 0 | 169038 | 0.39 | 0.34 | 0.12 | 0.14 | 0 | 0.27 | 0.8593 | 0.1902 | 0.8347 | 1.8132 | 20 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 7 | 5 | 12 | 260 | 282 | 225 | 262 | 0 | 1029 | 0.24 | 0.26 | 0.23 | 0.27 | 0 | 0.49 | 0.8517 | 0.3103 | 0.7529 | 1.9543 | 0 | 4 | 4 | 8 | 3404 | 3142 | 2126 | 2918 | 0 | 11590 | 0.27 | 0.26 | 0.22 | 0.25 | 0 | 0.47 | 0.9095 | 0.145 | 0.8701 | 1.9854 | 0 | 782 | 655 | 500 | 855 | 496 | 312 | 606 | 3405 | 525 | 498 | 3291 | 2904 | 1055 | 160 | 591 | 840 | 1343 | 151 | 830 | 5204 | 140 | 561 | 163 | 1507 | 245 | 435 | 441 | 1023 | 1264 | 1389 | 627 | 1151 | 199 | 1592 | 709 | 341 | 171 | 240 | 307 | 249 | 229 | 68 | 7083 | 170 | 181 | 1124 | 353 | 1033 | 610 | 563 | 377 | 118 | 2772 | 624 | 264 | 512 | 12 | 117 | 108 | 195 | 1493 | 133 | 17 | 433 |
NA | NC_009978 | NC_009978.1 | Hemiselmis andersenii chromosome 2; complete sequence; nucleomorph. | 69654 | 69199 | 22992 | 22910 | 0 | 184755 | 0.38 | 0.37 | 0.12 | 0.12 | 0 | 0.25 | 0.904 | 0.0051 | 0.995 | 1.8088 | 94 | 88 | 182 | 63685 | 56153 | 19924 | 22095 | 0 | 161857 | 0.38 | 0.34 | 0.13 | 0.15 | 0 | 0.28 | 0.8582 | 0.2117 | 0.8189 | 1.8157 | 2 | 82 | 82 | 164 | 62391 | 54755 | 19333 | 21471 | 0 | 157950 | 0.4 | 0.34 | 0.12 | 0.14 | 0 | 0.26 | 0.8549 | 0.2056 | 0.8241 | 1.801 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10 | 4 | 14 | 233 | 292 | 230 | 304 | 0 | 1059 | 0.22 | 0.28 | 0.22 | 0.29 | 0 | 0.51 | 0.8918 | 0.3048 | 0.7423 | 1.9727 | 0 | 1 | 1 | 2 | 52 | 61 | 72 | 68 | 0 | 253 | 0.21 | 0.24 | 0.28 | 0.27 | 0 | 0.55 | 0.9044 | 0.1081 | 0.8986 | 1.9894 | 0 | 805 | 545 | 507 | 817 | 500 | 281 | 576 | 3272 | 497 | 482 | 3189 | 2852 | 1013 | 119 | 591 | 716 | 1307 | 146 | 744 | 4489 | 125 | 499 | 157 | 1464 | 201 | 378 | 428 | 936 | 1197 | 1214 | 637 | 1064 | 203 | 1384 | 646 | 272 | 146 | 227 | 265 | 221 | 243 | 55 | 6611 | 153 | 177 | 981 | 355 | 1007 | 567 | 531 | 327 | 97 | 2685 | 603 | 206 | 481 | 15 | 106 | 120 | 195 | 1464 | 125 | 24 | 410 |
NA | NC_009979 | NC_009979.1 | Hemiselmis andersenii chromosome 3; complete sequence; nucleomorph. | 67594 | 67480 | 22535 | 21984 | 0 | 179593 | 0.38 | 0.38 | 0.13 | 0.12 | 0 | 0.25 | 0.9103 | 0.0132 | 0.9869 | 1.8079 | 80 | 80 | 160 | 61215 | 55147 | 19502 | 21046 | 0 | 156910 | 0.38 | 0.34 | 0.13 | 0.15 | 0 | 0.28 | 0.8618 | 0.187 | 0.8374 | 1.8211 | 0 | 73 | 70 | 143 | 59259 | 53289 | 18176 | 19291 | 0 | 150015 | 0.4 | 0.35 | 0.12 | 0.13 | 0 | 0.26 | 0.8581 | 0.1869 | 0.8377 | 1.8021 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 6 | 6 | 12 | 228 | 256 | 227 | 262 | 0 | 973 | 0.23 | 0.26 | 0.24 | 0.27 | 0 | 0.51 | 0.8863 | 0.2083 | 0.8182 | 1.9789 | 0 | 1 | 4 | 5 | 1728 | 1602 | 1099 | 1493 | 0 | 5922 | 0.25 | 0.26 | 0.23 | 0.26 | 0 | 0.49 | 0.9085 | 0.1393 | 0.8744 | 1.9863 | 0 | 708 | 600 | 417 | 753 | 404 | 242 | 507 | 2996 | 457 | 455 | 3085 | 2472 | 978 | 100 | 524 | 731 | 1230 | 157 | 738 | 4927 | 136 | 432 | 171 | 1261 | 180 | 359 | 396 | 906 | 1153 | 1100 | 529 | 1023 | 157 | 1321 | 629 | 279 | 156 | 184 | 278 | 211 | 210 | 57 | 6586 | 163 | 174 | 891 | 259 | 898 | 522 | 518 | 319 | 77 | 2484 | 579 | 228 | 479 | 16 | 100 | 101 | 167 | 1333 | 113 | 14 | 375 |
NA | NC_010637 | NC_010637.1 | Hemiselmis andersenii mitochondrion; complete genome. | 20131 | 23029 | 7758 | 9635 | 0 | 60553 | 0.33 | 0.38 | 0.13 | 0.16 | 0 | 0.29 | 0.9192 | 0.1751 | 0.8397 | 1.8604 | 73 | 0 | 73 | 12035 | 13467 | 4977 | 6435 | 0 | 36914 | 0.33 | 0.36 | 0.14 | 0.18 | 0 | 0.32 | 0.8711 | 0.2344 | 0.7989 | 1.8798 | 41 | 44 | 0 | 44 | 9794 | 11365 | 4117 | 5270 | 0 | 30546 | 0.34 | 0.37 | 0.13 | 0.17 | 0 | 0.3 | 0.8722 | 0.2495 | 0.7877 | 1.8535 | 41 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 27 | 0 | 27 | 616 | 689 | 318 | 406 | 0 | 2029 | 0.3 | 0.34 | 0.16 | 0.2 | 0 | 0.36 | 0.8671 | 0.2099 | 0.8174 | 1.923 | 0 | 2 | 0 | 2 | 1625 | 1413 | 542 | 759 | 0 | 4339 | 0.37 | 0.33 | 0.13 | 0.18 | 0 | 0.3 | 0.9006 | 0.2328 | 0.7956 | 1.874 | 0 | 254 | 91 | 222 | 182 | 238 | 85 | 201 | 635 | 22 | 135 | 350 | 319 | 226 | 59 | 195 | 109 | 143 | 70 | 139 | 682 | 29 | 318 | 41 | 246 | 46 | 29 | 101 | 183 | 347 | 141 | 104 | 204 | 41 | 238 | 262 | 40 | 32 | 19 | 73 | 37 | 33 | 21 | 599 | 42 | 22 | 337 | 92 | 120 | 133 | 159 | 66 | 66 | 745 | 156 | 23 | 132 | 4 | 36 | 31 | 92 | 246 | 37 | 3 | 99 |