GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	fr_chromo_N Frequency of 'N' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	fr_cds_N Frequency of 'N' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	fr_cds_intron_N Frequency of 'N' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	fr_tRNA_N Frequency of 'N' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_000740895.1	NC_025260	NC_025260.1	Theileria orientalis strain Shintoku DNA; chromosome 1; complete genome.	803206	792795	573326	576986	0	2746313	0.29	0.29	0.21	0.21	0	0.42	0.9538	0.0097	0.9903	1.9809	618	596	1214	721939	532270	454260	547353	2255822	0.32	0.25	0.2	0.23	0.44	0.9073	0.2606	0.7808	1.9553	1	598	571	1169	576875	404138	387704	461409	1830126	0.32	0.24	0.2	0.24	0	0.44	0.8775	0.3426	0.7263	1.9387	1	125541	112991	54323	70677	363532	0.34	0.32	0.14	0.2	0	0.34	0.8204	0.5008	0.6375	1.8318	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	6	9	15	189	262	290	373	1114	0.17	0.24	0.26	0.33	0	0.6	0.8783	0.2933	0.7522	1.9499	0	3	3	1361	1504	1024	1352	5241	0.26	0.29	0.21	0.25	0	0.45	0.9182	0.1481	0.8663	1.9877	11814	22047	7658	8547	10757	18367	6770	9175	5823	8555	12461	18656	11411	12031	10237	17555	6105	12476	11559	10028	16653	5503	7730	11472	12365	7286	5777	8815	7860	13655	7818	5860	6406	13258	12969	15318	9171	4117	12803	6499	10570	5065	19215	7551	7250	8096	5365	13310	6265	5574	9858	6887	7413	5641	12323	7520	3268	4204	5678	3985	10796	5700	6928	6783
GCF_000740895.1	NC_025261	NC_025261.1	Theileria orientalis strain Shintoku DNA; chromosome 2; complete genome.	640777	648071	464326	463805	0	2216979	0.29	0.29	0.21	0.21	0	0.42	0.953	0.0062	0.9938	1.9808	514	509	1023	573832	436153	371887	436623	1818495	0.32	0.25	0.2	0.23	0.43	0.9054	0.2623	0.7801	1.9509	26	498	494	992	468998	341517	323058	374806	1508379	0.32	0.24	0.2	0.24	0	0.44	0.8778	0.3389	0.7292	1.938	26	96701	88369	43630	55309	284009	0.33	0.32	0.15	0.2	0	0.35	0.8191	0.4877	0.644	1.8336	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	5	4	9	128	159	158	209	654	0.2	0.24	0.24	0.32	0	0.56	0.8887	0.2954	0.7484	1.9625	0	3	3	72	63	111	120	366	0.2	0.17	0.3	0.33	0	0.63	0.8929	0.1056	0.9	1.9479	9517	18069	6285	7528	8680	14100	6130	7812	4886	6979	10228	15316	9220	9387	7996	14562	5535	9841	10094	9111	12791	5218	6493	10139	9583	6478	4730	7329	6597	11343	6743	5277	5607	10650	10180	12713	7580	3629	10678	5516	8036	4143	15709	6548	5704	7548	4550	10265	5068	4801	7874	5392	6164	5299	9560	6332	2339	3358	4593	3558	8848	4386	5392	5705
GCF_000740895.1	NC_025262	NC_025262.1	Theileria orientalis strain Shintoku DNA; chromosome 3; complete genome.	587271	581725	412534	419263	0	2000793	0.29	0.29	0.21	0.21	0	0.42	0.9541	0.0128	0.9873	1.9794	414	480	894	528319	393896	332366	393144	1647725	0.32	0.25	0.2	0.23	0.43	0.906	0.2532	0.7869	1.9525	0	403	465	868	424482	300310	285102	333206	1343100	0.33	0.24	0.2	0.24	0	0.43	0.8765	0.3457	0.7257	1.9351	0	94983	85393	40786	52499	273661	0.34	0.32	0.14	0.2	0	0.34	0.8209	0.4746	0.6507	1.8333	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	4	6	10	147	175	200	236	758	0.19	0.23	0.26	0.31	0	0.57	0.8943	0.1727	0.846	1.9732	3	0	3	1361	1504	1024	1352	5241	0.26	0.29	0.21	0.25	0	0.45	0.9182	0.1481	0.8663	1.9877	8321	15860	5595	6738	7525	12847	5319	6987	4415	6169	9366	13815	8256	8484	7376	13164	4940	8490	8338	7743	11134	4518	5408	8867	8637	6001	4109	6544	6004	9875	5947	4511	4741	9493	9664	10910	6559	2999	9499	4694	7588	3803	14201	5705	5025	6385	4053	9679	4457	4387	6848	4617	5584	4593	8974	5618	2143	3086	3990	2934	8247	4266	5323	5312
GCF_000740895.1	NC_025263	NC_025263.1	Theileria orientalis strain Shintoku DNA; chromosome 4; complete genome.	594390	598089	410800	416232	0	2019511	0.29	0.3	0.2	0.21	0	0.41	0.9518	0.0097	0.9904	1.9762	475	445	920	533280	402226	331367	389254	1656127	0.32	0.25	0.2	0.23	0.43	0.906	0.2553	0.7846	1.9536	119	458	432	890	433497	312942	288848	335389	1370676	0.32	0.24	0.2	0.23	0	0.43	0.8773	0.34	0.7292	1.9364	1	91278	83074	37701	47759	259812	0.34	0.33	0.14	0.19	0	0.32	0.812	0.5027	0.6364	1.8127	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	7	6	13	175	218	260	326	979	0.18	0.22	0.27	0.33	0	0.6	0.8951	0.2391	0.7903	1.9568	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8860	16038	5704	6755	7400	12986	5277	7423	4473	6271	9844	14149	8785	8406	7437	13542	5289	8540	8512	8386	11404	4281	5747	9409	8965	5696	4333	6935	6311	9845	5869	4909	4959	10070	9647	11098	6832	2955	9713	4775	7303	3486	14571	5453	5192	6699	3901	9744	4643	4722	7182	4713	5814	4780	8888	5685	2326	2939	3862	3070	8546	4222	5142	5061
GCF_000740895.1	NW_009646192	NW_009646192.1	Theileria orientalis strain Shintoku mitochondrial DNA; partial genome.	844	940	360	451	0	2595	0.33	0.36	0.14	0.17	0	0.31	0.8811	0.166	0.848	1.8918	1	0	1	326	510	155	217	1208	0.27	0.42	0.13	0.18	0.31	0.8811	0.3868	0.6768	1.8602	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCF_000740895.1	NW_009646193	NW_009646193.1	Theileria orientalis strain Shintoku apicoplast DNA; partial genome.	7720	8846	2179	1828	3600	24173	0.32	0.37	0.09	0.08	0.15	0.17	0.8846	0.1556	0.8558	1.6513	0	6	6	2928	2609	649	857	7043	0.44	0.34	0.09	0.12	0.21	0.8519	0.3053	0.7563	1.7182	0	0	6	6	2027	1731	509	656	4923	0.44	0.33	0.1	0.13	0	0.23	0.8296	0.3647	0.7048	1.741	0	901	878	140	201	2120	0.44	0.4	0.05	0.1	0	0.16	0.8009	0.4075	0.7155	1.5854	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	34	16	29	26	10	15	13	68	3	9	108	47	16	4	28	33	52	10	10	79	9	36	3	43	7	7	24	20	79	27	5	22	2	121	30	20	7	6	25	2	7	1	163	1	7	34	8	35	22	22	5	3	119	21	6	11	14	1	1	2	23	24	2	0