GBRAP|Results

Assembly Assembly	Locus_ID Locus_ID	Version Version	Definition Sequence description	bp_chromo_A Total number of 'A' nucleotides in the whole sequence	bp_chromo_T Total number of 'T' nucleotides in the whole sequence	bp_chromo_C Total number of 'C' nucleotides in the whole sequence	bp_chromo_G Total number of 'G' nucleotides in the whole sequence	bp_chromo_N Total number of 'N' nucleotides in the whole sequence	bp_chromo_tot Total number of nucleotides in the whole sequence	fr_chromo_A Frequency of 'A' nucleotides in the whole sequence	fr_chromo_T Frequency of 'T' nucleotides in the whole sequence	fr_chromo_C Frequency of 'C' nucleotides in the whole sequence	fr_chromo_G Frequency of 'G' nucleotides in the whole sequence	GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence	topo_entropy_chromo Topological entropy of the whole sequence	chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence	chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee	shannon_chromo Shannon entropy of the whole sequence	n_gene_pos Number of genes in the positive strand	n_gene_neg Number of genes in the negative strand	n_gene_tot Total number of genes in the chromosome	bp_gene_A Number of 'A' bases in total genes	bp_gene_T Number of 'T' bases in total genes	bp_gene_C Number of 'C' bases in total genes	bp_gene_G Number of 'G' bases in total genes	bp_gene_N Number of 'N' bases in total genes	bp_gene_tot Total number of bases in total genes	fr_gene_A Frequency of 'A' bases among total gene bases	fr_gene_T Frequency of 'T' bases among total gene bases	fr_gene_C Frequency of 'C' bases among total gene bases	fr_gene_G Frequency of 'G' bases among total gene bases	GC_gene Percentage of 'G' and 'C' bases in total genes	topo_entropy_gene Topological entropy calculated from total gene sequences	chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes	chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes	shannon_gene Shannon entropy score for total genes	bp_gene_overlap_tot Number of bases overlapping between genes on two strands	n_cds_pos Number of CDS in the positive strand	n_cds_neg Number of CDS in the negative strand	n_cds_tot Total number of CDS in the chromosome	bp_cds_A Number of 'A' bases in total CDS (coding sequences)	bp_cds_T Number of 'T' bases in total CDS	bp_cds_C Number of 'C' bases in total CDS	bp_cds_G Number of 'G' bases in total CDS	bp_cds_N Number of 'N' bases in total CDS	bp_cds_tot Total bases in total CDS	fr_cds_A Frequency of 'A' bases among total CDS bases	fr_cds_T Frequency of 'T' bases among total CDS bases	fr_cds_C Frequency of 'C' bases among total CDS bases	fr_cds_G Frequency of 'G' bases among total CDS bases	GC_cds Percentage of 'G' and 'C' bases in total CDS	topo_entropy_cds Topological entropy calculated from total CDS sequences	chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS	chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS	shannon_cds Shannon entropy score for total CDS	bp_cds_overlap_tot Number of bases overlapping between CDS on two strands	bp_cds_intron_A Number of 'A' bases in total introns between CDS	bp_cds_intron_T Number of 'T' bases in total introns between CDS	bp_cds_intron_C Number of 'C' bases in total introns between CDS	bp_cds_intron_G Number of 'G' bases in total introns between CDS	bp_cds_intron_tot Total bases in total introns between CDS	fr_cds_intron_A Frequency of 'A' bases in total introns between CDS	fr_cds_intron_T Frequency of 'T' bases in total introns between CDS	fr_cds_intron_C Frequency of 'C' bases in total introns between CDS	fr_cds_intron_G Frequency of 'G' bases in total introns between CDS	GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS	topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS	chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS	chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS	shannon_cds_intron Shannon entropy score for total introns between CDS	fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases	fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases	fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases	fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases	fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases	GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA	topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences	chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA	chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA	shannon_ncRNA Shannon entropy score for total ncRNA	fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA	fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA	fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA	fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA	fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA	GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA	topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA	chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA	chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA	shannon_nc_intron Shannon entropy score for total introns between ncRNA	n_tRNA_pos Number of tRNA in the positive strand	n_tRNA_neg Number of tRNA in the negative strand	n_tRNA_tot Total number of tRNA in the chromosome	bp_tRNA_A Number of 'A' bases in total tRNA	bp_tRNA_T Number of 'T' bases in total tRNA	bp_tRNA_C Number of 'C' bases in total tRNA	bp_tRNA_G Number of 'G' bases in total tRNA	bp_tRNA_tot Total bases in total tRNA	fr_tRNA_A Frequency of 'A' bases among total tRNA bases	fr_tRNA_T Frequency of 'T' bases among total tRNA bases	fr_tRNA_C Frequency of 'C' bases among total tRNA bases	fr_tRNA_G Frequency of 'G' bases among total tRNA bases	GC_tRNA Percentage of 'G' and 'C' bases in total tRNA	topo_entropy_tRNA Topological entropy calculated from total tRNA sequences	chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA	chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA	shannon_tRNA Shannon entropy score for total tRNA	n_rRNA_pos Number of rRNA in the positive strand	n_rRNA_neg Number of rRNA in the negative strand	n_rRNA_tot Total number of rRNA in the chromosome	bp_rRNA_A Number of 'A' bases in total rRNA	bp_rRNA_T Number of 'T' bases in total rRNA	bp_rRNA_C Number of 'C' bases in total rRNA	bp_rRNA_G Number of 'G' bases in total rRNA	bp_rRNA_N Number of 'N' bases in total rRNA	bp_rRNA_tot Total bases in total rRNA	fr_rRNA_A Frequency of 'A' bases among total rRNA bases	fr_rRNA_T Frequency of 'T' bases among total rRNA bases	fr_rRNA_C Frequency of 'C' bases among total rRNA bases	fr_rRNA_G Frequency of 'G' bases among total rRNA bases	fr_rRNA_N Frequency of 'N' bases among total rRNA bases	GC_rRNA Percentage of 'G' and 'C' bases in total rRNA	topo_entropy_rRNA Topological entropy calculated from total rRNA sequences	chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA	chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA	shannon_rRNA Shannon entropy score for total rRNA	ATG ATG	AAG AAG	GTA GTA	ACT ACT	GCA GCA	GAG GAG	GCT GCT	ATT ATT	TCC TCC	TGG TGG	AAT AAT	GAA GAA	TCA TCA	ACG ACG	AGT AGT	AAC AAC	TCT TCT	GTG GTG	TTC TTC	TTT TTT	CTG CTG	GGT GGT	CTC CTC	GAT GAT	CAG CAG	ACC ACC	CTA CTA	TTG TTG	TAT TAT	GGA GGA	ATC ATC	CTT CTT	GTC GTC	ATA ATA	ACA ACA	GAC GAC	CAC CAC	CCC CCC	TAC TAC	GCC GCC	AGC AGC	CGC CGC	AAA AAA	GGC GGC	TGC TGC	GTT GTT	GGG GGG	AGA AGA	TGT TGT	CAT CAT	TCG TCG	GCG GCG	TTA TTA	CCT CCT	AGG AGG	CCA CCA	TAG TAG	CGG CGG	CCG CCG	CGT CGT	CAA CAA	TAA TAA	TGA TGA	CGA CGA
GCF_026262505.1	NC_067203	NC_067203.1	Trichomonas vaginalis G3 chromosome I; whole genome shotgun sequence.	9343913	9350400	4519295	4508974	3705	27726287	0.34	0.34	0.16	0.16	0.33	0.9189	0.0015	0.9985	1.9104	5669	5626	11295	4213463	3389571	2044933	2019317	25	11667309	0.37	0.28	0.17	0.18	0.36	0.8847	0.2449	0.7948	1.9113	8	5039	4980	10019	3582600	2827495	1782823	1752976	0	9945894	0.36	0.28	0.18	0.18	0.36	0.8845	0.249	0.7914	1.9153	7	209	248	85	64	606	0.34	0.4	0.15	0.11	0.25	0.8221	0.25	0.7865	1.7891	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	51	49	100	1492	1971	1708	2243	7414	0.2	0.27	0.23	0.3	0.53	0.8825	0.2951	0.7535	1.965	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	77522	93962	36386	51944	78402	50936	61747	132837	24145	26678	134563	191567	86534	14558	36853	80006	60199	12625	82017	87616	11028	46292	36098	130730	39212	14737	20154	53115	86503	61090	61890	77959	32732	68036	100167	59832	18447	6233	48797	21557	18604	11487	176790	24026	24949	91181	5085	67200	26727	44951	16024	11500	88957	45015	13226	77588	959	1814	12101	20327	101408	7086	1591	10993
GCF_026262505.1	NC_067204	NC_067204.1	Trichomonas vaginalis G3 chromosome II; whole genome shotgun sequence.	8814430	8754951	4239438	4266327	6475	26081621	0.34	0.34	0.16	0.16	0.33	0.9117	0.0065	0.9935	1.9109	5305	5262	10567	3569133	2820126	1740957	1736013	50	9866279	0.37	0.27	0.18	0.18	0.36	0.8846	0.2534	0.788	1.9137	7	4554	4564	9118	2980945	2315634	1488304	1478735	50	8263668	0.37	0.27	0.18	0.18	0.36	0.8845	0.2574	0.7845	1.9174	6	1724	413	881	719	3737	0.4	0.24	0.16	0.2	0.36	0.6779	0.8274	0.4485	1.7166	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	21	20	41	586	781	666	872	2905	0.2	0.27	0.23	0.3	0.53	0.8742	0.2877	0.7573	1.9668	63	0	63	5128	6199	4874	4679	0	20880	0.25	0.3	0.23	0.22	0	0.46	0.8992	0.1155	0.8933	1.991	66015	80023	30723	42140	67419	43766	52420	105686	19444	23288	107231	160741	68795	11850	30421	68253	48170	10070	66570	71615	9092	40848	29316	105424	33408	12738	16551	42610	72365	50720	49061	64405	28439	56796	82566	53802	15189	5460	41970	18750	15183	9845	146437	20516	20243	75348	4061	57459	21554	37622	12915	9456	72727	36737	11389	66764	931	1605	10090	17645	84626	6348	1429	9456
GCF_026262505.1	NC_067205	NC_067205.1	Trichomonas vaginalis G3 chromosome III; whole genome shotgun sequence.	9364414	9360381	4503696	4505197	4277	27737965	0.34	0.34	0.16	0.16	0.32	0.9108	0.0004	0.9996	1.9095	5629	5396	11025	3573905	2814506	1694624	1710366	0	9793401	0.37	0.27	0.17	0.18	0.36	0.8835	0.2687	0.7766	1.9109	3	4793	4538	9331	2895013	2240571	1403448	1408823	0	7947855	0.37	0.27	0.18	0.18	0.36	0.8834	0.2716	0.7741	1.9138	3	171	199	51	53	474	0.35	0.42	0.12	0.11	0.23	0.7856	0.3016	0.7548	1.7503	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	35	43	78	1167	1502	1357	1797	5823	0.2	0.26	0.23	0.31	0.54	0.8802	0.2916	0.7573	1.9632	28	0	28	2302	2695	2136	2075	0	9208	0.25	0.29	0.23	0.23	0	0.46	0.8936	0.0948	0.9116	1.9911	62927	77579	31034	42865	60071	41522	45742	101087	17761	22265	105872	150993	69426	12021	32107	68603	47424	11005	63786	72439	9419	40188	25664	96524	29461	11592	16100	40555	74927	49664	43761	55647	26218	58867	81173	55194	13851	5327	39725	14983	14782	7835	145126	18537	18561	73031	4406	54488	22093	35533	12529	8569	70020	37381	11331	63506	959	1641	9864	15762	80178	6353	1563	9865
GCF_026262505.1	NC_067206	NC_067206.1	Trichomonas vaginalis G3 chromosome IV; whole genome shotgun sequence.	13515519	13513377	6587535	6584350	11136	40211917	0.34	0.34	0.16	0.16	0.33	0.9076	0.0003	0.9997	1.9124	7899	7936	15835	5081924	3963309	2433713	2467757	150	13946853	0.37	0.27	0.17	0.18	0.36	0.8836	0.2682	0.7771	1.9122	4	6812	6894	13706	4200690	3225477	2058189	2074390	125	11558871	0.37	0.27	0.18	0.19	0.36	0.8831	0.2718	0.7742	1.9153	3	302	308	124	117	851	0.38	0.37	0.14	0.11	0.25	0.7951	0.2308	0.8039	1.8006	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	42	42	84	1238	1635	1453	1880	6206	0.2	0.26	0.23	0.3	0.54	0.8809	0.2828	0.7609	1.9667	18	15	33	13118	12401	9628	12491	25	47663	0.28	0.26	0.2	0.26	0	0.46	0.9159	0.1591	0.8562	1.9883	93297	114636	44161	61204	91543	63452	69997	144696	26206	33169	148002	225295	96228	17318	43832	97551	67774	15909	91715	101299	13912	56791	40020	143267	46792	17257	23627	60487	102280	70229	64205	84918	38733	83009	115751	79501	20966	7794	58292	23419	21238	12865	210169	27208	26846	106364	5944	81127	30230	51249	17822	13194	102078	52844	16543	91654	1393	2360	13917	24677	119072	9405	2395	13782
GCF_026262505.1	NC_067207	NC_067207.1	Trichomonas vaginalis G3 chromosome V; whole genome shotgun sequence.	11658843	11634749	5670829	5683731	9023	34657175	0.34	0.34	0.16	0.16	0.33	0.9175	0.0022	0.9978	1.9124	7137	6915	14052	4988518	3976465	2430107	2410395	225	13805710	0.37	0.28	0.18	0.18	0.36	0.8848	0.2523	0.7891	1.9132	1084	6198	5998	12196	4166077	3265459	2076136	2051974	125	11559771	0.36	0.27	0.18	0.18	0.36	0.8848	0.2551	0.7867	1.9168	7	169	176	126	96	567	0.29	0.33	0.23	0.15	0.38	0.8123	0.3396	0.7258	1.8488	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	58	57	115	1652	2283	2021	2691	8647	0.19	0.26	0.23	0.31	0.54	0.8882	0.3126	0.738	1.9658	14	0	14	340	282	546	484	0	1652	0.21	0.17	0.33	0.29	0	0.62	0.8763	0.1534	0.8596	1.9507	90822	110119	43046	59932	90640	59796	69200	149518	27612	32500	151875	222277	100632	17055	44276	96553	70991	14659	94267	102152	13312	55398	40450	147517	45545	17394	23484	60254	101972	72205	68809	88310	39292	79897	117009	73924	21208	7524	58271	25025	21468	12840	205683	28451	28315	107241	5688	78575	30854	51322	19194	13077	101993	52582	16091	92608	1287	2207	14207	24162	116489	8463	1893	13799
GCF_026262505.1	NC_067208	NC_067208.1	Trichomonas vaginalis G3 chromosome VI; whole genome shotgun sequence.	6847935	6821189	3329538	3327823	4958	20331443	0.34	0.34	0.16	0.16	0.33	0.9088	0.0022	0.9978	1.9123	4353	4250	8603	2769176	2173931	1316592	1323350	25	7583074	0.37	0.27	0.17	0.18	0.36	0.8828	0.2699	0.7759	1.9109	3	3664	3537	7201	2238560	1739092	1091515	1088975	0	6158142	0.37	0.27	0.18	0.18	0.36	0.8825	0.272	0.7741	1.9139	1	82	85	33	44	244	0.33	0.34	0.13	0.2	0.33	0.8402	0.3576	0.725	1.8434	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22	45	67	1234	1454	1164	1508	5360	0.22	0.27	0.22	0.29	0.51	0.8829	0.2673	0.7755	1.96	0	0	0	0	0	0	0	0	0	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	49773	58962	23821	33262	47004	32650	35224	78212	13599	17366	80508	117207	53392	9212	24782	53525	36294	8389	49585	55659	7270	30348	20181	75162	23554	9276	12514	32476	57420	37317	33962	44227	20759	45764	62619	43405	10821	3987	31413	11471	11373	6314	110587	13315	13778	56871	3137	42303	16878	27559	9612	6812	55436	29038	8612	48819	677	1294	7771	13019	63486	4971	1173	7504