| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA | NC_027534 | NC_027534.1 | Chenuda virus isolate EGY1954/01 segment 1 RNA-dependent RNA polymerase (VP1) gene; complete cds. | 874 | 933 | 1014 | 1074 | 0 | 3895 | 0.22 | 0.24 | 0.26 | 0.28 | 0 | 0.54 | 0.9278 | 0.0614 | 0.9404 | 1.9956 | 1 | 0 | 1 | 863 | 927 | 1001 | 1067 | 0 | 3858 | 0.22 | 0.24 | 0.26 | 0.28 | 0 | 0.54 | 0.9276 | 0.0677 | 0.9346 | 1.9954 | 0 | 1 | 0 | 1 | 863 | 927 | 1001 | 1067 | 0 | 3858 | 0.22 | 0.24 | 0.26 | 0.28 | 0 | 0.54 | 0.9276 | 0.0677 | 0.9346 | 1.9954 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 36 | 29 | 10 | 18 | 19 | 58 | 29 | 22 | 14 | 14 | 13 | 24 | 19 | 39 | 4 | 19 | 19 | 30 | 21 | 27 | 27 | 8 | 29 | 40 | 29 | 20 | 12 | 21 | 29 | 18 | 28 | 31 | 23 | 17 | 13 | 29 | 13 | 16 | 16 | 23 | 15 | 28 | 12 | 24 | 10 | 20 | 17 | 12 | 8 | 25 | 20 | 42 | 12 | 13 | 13 | 16 | 1 | 22 | 22 | 24 | 8 | 0 | 0 | 16 |
| NA | NC_027535 | NC_027535.1 | Chenuda virus isolate EGY1954/01 segment 2 inner core protein (VP2) gene; complete cds. | 587 | 674 | 750 | 776 | 0 | 2787 | 0.21 | 0.24 | 0.27 | 0.28 | 0 | 0.55 | 0.9264 | 0.086 | 0.9187 | 1.9918 | 1 | 0 | 1 | 571 | 662 | 734 | 760 | 0 | 2727 | 0.21 | 0.24 | 0.27 | 0.28 | 0 | 0.55 | 0.9246 | 0.0912 | 0.9142 | 1.9915 | 0 | 1 | 0 | 1 | 571 | 662 | 734 | 760 | 0 | 2727 | 0.21 | 0.24 | 0.27 | 0.28 | 0 | 0.55 | 0.9246 | 0.0912 | 0.9142 | 1.9915 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 13 | 4 | 8 | 8 | 16 | 33 | 9 | 17 | 4 | 6 | 13 | 19 | 7 | 14 | 2 | 18 | 11 | 28 | 17 | 25 | 22 | 3 | 17 | 32 | 30 | 9 | 11 | 19 | 18 | 10 | 27 | 19 | 19 | 10 | 9 | 24 | 11 | 22 | 14 | 14 | 9 | 13 | 1 | 15 | 3 | 23 | 16 | 5 | 3 | 13 | 16 | 44 | 9 | 13 | 10 | 17 | 1 | 26 | 11 | 16 | 16 | 0 | 0 | 17 |
| NA | NC_027536 | NC_027536.1 | Chenuda virus isolate EGY1954/01 segment 3 capping enzyme (VP3) gene; complete cds. | 417 | 454 | 487 | 573 | 0 | 1931 | 0.22 | 0.24 | 0.25 | 0.3 | 0 | 0.55 | 0.9262 | 0.1236 | 0.8842 | 1.9899 | 1 | 0 | 1 | 409 | 448 | 480 | 562 | 0 | 1899 | 0.22 | 0.24 | 0.25 | 0.3 | 0 | 0.55 | 0.926 | 0.1242 | 0.8835 | 1.99 | 0 | 1 | 0 | 1 | 409 | 448 | 480 | 562 | 0 | 1899 | 0.22 | 0.24 | 0.25 | 0.3 | 0 | 0.55 | 0.926 | 0.1242 | 0.8835 | 1.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 9 | 10 | 10 | 7 | 11 | 24 | 5 | 11 | 6 | 16 | 4 | 8 | 12 | 10 | 1 | 5 | 7 | 20 | 11 | 13 | 14 | 5 | 10 | 26 | 12 | 9 | 8 | 14 | 9 | 4 | 17 | 10 | 12 | 12 | 8 | 24 | 7 | 9 | 4 | 12 | 10 | 17 | 3 | 13 | 6 | 12 | 12 | 11 | 5 | 10 | 3 | 22 | 8 | 7 | 8 | 8 | 0 | 13 | 9 | 10 | 4 | 1 | 0 | 15 |
| NA | NC_027537 | NC_027537.1 | Chenuda virus isolate EGY1954/01 segment 4 outer capsid protein (VP4) gene; complete cds. | 420 | 388 | 437 | 522 | 0 | 1767 | 0.24 | 0.22 | 0.25 | 0.3 | 0 | 0.54 | 0.9243 | 0.1282 | 0.8805 | 1.9911 | 1 | 0 | 1 | 406 | 376 | 418 | 507 | 0 | 1707 | 0.24 | 0.22 | 0.24 | 0.3 | 0 | 0.54 | 0.9234 | 0.1346 | 0.8753 | 1.9908 | 0 | 1 | 0 | 1 | 406 | 376 | 418 | 507 | 0 | 1707 | 0.24 | 0.22 | 0.24 | 0.3 | 0 | 0.54 | 0.9234 | 0.1346 | 0.8753 | 1.9908 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 13 | 17 | 10 | 3 | 11 | 22 | 10 | 8 | 4 | 7 | 6 | 7 | 3 | 26 | 1 | 11 | 7 | 14 | 6 | 12 | 13 | 3 | 6 | 18 | 9 | 10 | 9 | 8 | 13 | 8 | 11 | 6 | 9 | 3 | 5 | 18 | 3 | 11 | 11 | 12 | 3 | 8 | 12 | 8 | 16 | 16 | 16 | 6 | 5 | 5 | 3 | 22 | 5 | 5 | 9 | 14 | 0 | 6 | 5 | 8 | 4 | 0 | 1 | 8 |
| NA | NC_027538 | NC_027538.1 | Chenuda virus isolate EGY1954/01 segment 5 tubule protein (NS1) gene; complete cds. | 335 | 408 | 471 | 486 | 0 | 1700 | 0.2 | 0.24 | 0.28 | 0.29 | 0 | 0.56 | 0.9274 | 0.1139 | 0.8951 | 1.9854 | 1 | 0 | 1 | 316 | 386 | 446 | 463 | 0 | 1611 | 0.2 | 0.24 | 0.28 | 0.29 | 0 | 0.56 | 0.9267 | 0.1184 | 0.891 | 1.9848 | 0 | 1 | 0 | 1 | 316 | 386 | 446 | 463 | 0 | 1611 | 0.2 | 0.24 | 0.28 | 0.29 | 0 | 0.56 | 0.9267 | 0.1184 | 0.891 | 1.9848 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10 | 1 | 8 | 6 | 13 | 17 | 11 | 9 | 12 | 9 | 7 | 12 | 2 | 6 | 0 | 5 | 3 | 13 | 19 | 14 | 15 | 4 | 12 | 12 | 15 | 10 | 8 | 7 | 4 | 6 | 7 | 8 | 9 | 4 | 8 | 19 | 6 | 7 | 6 | 10 | 2 | 15 | 2 | 11 | 9 | 12 | 8 | 9 | 2 | 12 | 5 | 26 | 10 | 6 | 7 | 3 | 0 | 12 | 9 | 8 | 4 | 1 | 0 | 10 |
| NA | NC_027548 | NC_027548.1 | Chenuda virus isolate EGY1954/01 segment 6 outer capsid protein 2 (VP5) gene; complete cds. | 396 | 331 | 438 | 507 | 0 | 1672 | 0.24 | 0.2 | 0.26 | 0.3 | 0 | 0.57 | 0.9192 | 0.1624 | 0.8499 | 1.983 | 1 | 0 | 1 | 382 | 316 | 423 | 487 | 0 | 1608 | 0.24 | 0.2 | 0.26 | 0.3 | 0 | 0.57 | 0.9172 | 0.1649 | 0.8479 | 1.9826 | 0 | 1 | 0 | 1 | 382 | 316 | 423 | 487 | 0 | 1608 | 0.24 | 0.2 | 0.26 | 0.3 | 0 | 0.57 | 0.9172 | 0.1649 | 0.8479 | 1.9826 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 15 | 14 | 2 | 3 | 11 | 26 | 12 | 11 | 6 | 3 | 6 | 15 | 5 | 19 | 5 | 4 | 3 | 15 | 8 | 6 | 17 | 11 | 1 | 10 | 25 | 8 | 5 | 4 | 3 | 8 | 10 | 9 | 14 | 12 | 5 | 7 | 7 | 7 | 5 | 19 | 4 | 13 | 5 | 6 | 2 | 6 | 5 | 4 | 0 | 16 | 8 | 31 | 8 | 6 | 3 | 5 | 1 | 9 | 6 | 4 | 7 | 0 | 0 | 11 |
| NA | NC_027549 | NC_027549.1 | Chenuda virus isolate EGY1954/01 segment 7 viral inclusion body protein (NS2) gene; complete cds. | 273 | 255 | 344 | 358 | 0 | 1230 | 0.22 | 0.21 | 0.28 | 0.29 | 0 | 0.57 | 0.9229 | 0.054 | 0.9475 | 1.985 | 1 | 0 | 1 | 255 | 239 | 327 | 334 | 0 | 1155 | 0.22 | 0.21 | 0.28 | 0.29 | 0 | 0.57 | 0.9236 | 0.043 | 0.9581 | 1.9845 | 0 | 1 | 0 | 1 | 255 | 239 | 327 | 334 | 0 | 1155 | 0.22 | 0.21 | 0.28 | 0.29 | 0 | 0.57 | 0.9236 | 0.043 | 0.9581 | 1.9845 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 13 | 6 | 1 | 4 | 3 | 18 | 8 | 6 | 5 | 1 | 2 | 11 | 4 | 11 | 1 | 2 | 2 | 10 | 8 | 5 | 7 | 3 | 7 | 12 | 6 | 5 | 2 | 6 | 7 | 4 | 8 | 6 | 11 | 2 | 5 | 8 | 3 | 9 | 2 | 8 | 7 | 11 | 8 | 6 | 3 | 7 | 8 | 3 | 1 | 3 | 5 | 17 | 5 | 6 | 4 | 9 | 1 | 2 | 15 | 7 | 7 | 0 | 0 | 8 |
| NA | NC_027550 | NC_027550.1 | Chenuda virus isolate EGY1954/01 segment 8 major core protein (VP7) gene; complete cds. | 256 | 246 | 351 | 324 | 0 | 1177 | 0.22 | 0.21 | 0.3 | 0.28 | 0 | 0.57 | 0.9255 | 0.0599 | 0.942 | 1.9836 | 1 | 0 | 1 | 233 | 233 | 330 | 302 | 0 | 1098 | 0.21 | 0.21 | 0.3 | 0.28 | 0 | 0.58 | 0.9243 | 0.0443 | 0.9576 | 1.9826 | 0 | 1 | 0 | 1 | 233 | 233 | 330 | 302 | 0 | 1098 | 0.21 | 0.21 | 0.3 | 0.28 | 0 | 0.58 | 0.9243 | 0.0443 | 0.9576 | 1.9826 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 8 | 0 | 4 | 2 | 7 | 11 | 10 | 5 | 5 | 4 | 4 | 7 | 3 | 13 | 0 | 11 | 2 | 10 | 7 | 4 | 6 | 8 | 5 | 7 | 12 | 6 | 3 | 7 | 9 | 5 | 9 | 7 | 4 | 4 | 6 | 12 | 2 | 13 | 12 | 7 | 1 | 8 | 0 | 3 | 4 | 7 | 3 | 3 | 2 | 4 | 2 | 20 | 1 | 6 | 3 | 10 | 0 | 10 | 6 | 2 | 3 | 1 | 0 | 6 |
| NA | NC_027551 | NC_027551.1 | Chenuda virus isolate EGY1954/01 segment 9 helicase (VP6) and NS4 protein (NS4) genes; complete cds. | 243 | 190 | 260 | 312 | 0 | 1005 | 0.24 | 0.19 | 0.26 | 0.31 | 0 | 0.57 | 0.9107 | 0.2133 | 0.8076 | 1.9781 | 2 | 0 | 2 | 227 | 180 | 247 | 294 | 0 | 948 | 0.24 | 0.19 | 0.26 | 0.31 | 0 | 0.57 | 0.9024 | 0.2024 | 0.8165 | 1.9783 | 0 | 2 | 0 | 2 | 227 | 180 | 247 | 294 | 0 | 948 | 0.24 | 0.19 | 0.26 | 0.31 | 0 | 0.57 | 0.9024 | 0.2024 | 0.8165 | 1.9783 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 2 | 6 | 2 | 5 | 9 | 10 | 12 | 3 | 6 | 2 | 5 | 10 | 3 | 9 | 1 | 7 | 4 | 6 | 2 | 2 | 7 | 8 | 1 | 11 | 6 | 2 | 2 | 4 | 2 | 12 | 6 | 6 | 3 | 5 | 2 | 9 | 4 | 5 | 3 | 4 | 3 | 7 | 8 | 13 | 0 | 8 | 5 | 3 | 0 | 5 | 4 | 13 | 1 | 6 | 3 | 1 | 1 | 0 | 10 | 8 | 3 | 0 | 0 | 6 |
| NA | NC_027552 | NC_027552.1 | Chenuda virus isolate EGY1954/01 segment 10 NS3 protein (NS3) and NS3a protein (NS3a) genes; complete cds. | 180 | 136 | 188 | 242 | 0 | 746 | 0.24 | 0.18 | 0.25 | 0.32 | 0 | 0.58 | 0.8962 | 0.2648 | 0.7662 | 1.9706 | 2 | 0 | 2 | 164 | 118 | 171 | 219 | 0 | 672 | 0.24 | 0.18 | 0.25 | 0.33 | 0 | 0.58 | 0.8886 | 0.2862 | 0.7502 | 1.9668 | 0 | 2 | 0 | 2 | 164 | 118 | 171 | 219 | 0 | 672 | 0.24 | 0.18 | 0.25 | 0.33 | 0 | 0.58 | 0.8886 | 0.2862 | 0.7502 | 1.9668 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 11 | 8 | 4 | 1 | 8 | 7 | 3 | 3 | 5 | 3 | 0 | 3 | 2 | 9 | 1 | 5 | 1 | 10 | 0 | 0 | 5 | 1 | 3 | 2 | 2 | 6 | 2 | 2 | 3 | 4 | 4 | 3 | 5 | 1 | 3 | 4 | 1 | 2 | 1 | 3 | 1 | 2 | 6 | 3 | 1 | 4 | 5 | 3 | 1 | 2 | 5 | 21 | 3 | 2 | 2 | 6 | 1 | 3 | 3 | 3 | 4 | 0 | 0 | 2 |