| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA | NC_077726 | NC_077726.1 | Maize rough dwarf virus putative RNA dependent RNA polymerase (QK487_s1gp1) gene; complete cds. | 1490 | 1566 | 648 | 798 | 0 | 4502 | 0.33 | 0.35 | 0.14 | 0.18 | 0 | 0.32 | 0.9132 | 0.1286 | 0.8817 | 1.9029 | 1 | 0 | 1 | 1467 | 1533 | 625 | 770 | 0 | 4395 | 0.33 | 0.35 | 0.14 | 0.18 | 0 | 0.32 | 0.9124 | 0.1259 | 0.8843 | 1.8988 | 0 | 1 | 0 | 1 | 1467 | 1533 | 625 | 770 | 0 | 4395 | 0.33 | 0.35 | 0.14 | 0.18 | 0 | 0.32 | 0.9124 | 0.1259 | 0.8843 | 1.8988 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 43 | 16 | 22 | 29 | 6 | 15 | 36 | 61 | 10 | 12 | 76 | 62 | 31 | 5 | 33 | 22 | 37 | 18 | 13 | 79 | 4 | 28 | 2 | 72 | 8 | 13 | 10 | 44 | 42 | 25 | 17 | 33 | 7 | 22 | 17 | 17 | 9 | 5 | 11 | 10 | 11 | 4 | 92 | 7 | 4 | 45 | 2 | 29 | 18 | 36 | 4 | 5 | 70 | 28 | 7 | 6 | 0 | 2 | 2 | 14 | 47 | 0 | 1 | 9 |
| NA | NC_077729 | NC_077729.1 | Maize rough dwarf virus structural protein P2 (QK487_s2gp1) gene; complete cds. | 1284 | 1251 | 618 | 660 | 0 | 3813 | 0.34 | 0.33 | 0.16 | 0.17 | 0 | 0.34 | 0.9061 | 0.0459 | 0.9553 | 1.9198 | 1 | 0 | 1 | 1250 | 1210 | 587 | 634 | 0 | 3681 | 0.34 | 0.33 | 0.16 | 0.17 | 0 | 0.33 | 0.9066 | 0.0548 | 0.9469 | 1.9162 | 0 | 1 | 0 | 1 | 1250 | 1210 | 587 | 634 | 0 | 3681 | 0.34 | 0.33 | 0.16 | 0.17 | 0 | 0.33 | 0.9066 | 0.0548 | 0.9469 | 1.9162 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 34 | 18 | 19 | 61 | 10 | 14 | 27 | 48 | 5 | 10 | 75 | 47 | 22 | 5 | 26 | 32 | 17 | 7 | 23 | 54 | 8 | 20 | 5 | 57 | 4 | 13 | 8 | 28 | 48 | 22 | 17 | 12 | 8 | 17 | 18 | 28 | 10 | 5 | 16 | 7 | 4 | 4 | 60 | 12 | 2 | 45 | 0 | 26 | 15 | 15 | 6 | 4 | 37 | 24 | 2 | 11 | 0 | 2 | 1 | 12 | 32 | 1 | 0 | 7 |
| NA | NC_077727 | NC_077727.1 | Maize rough dwarf virus structural protein P3 (QK487_s3gp1) gene; complete cds. | 1106 | 1224 | 611 | 632 | 0 | 3573 | 0.31 | 0.34 | 0.17 | 0.18 | 0 | 0.35 | 0.9134 | 0.0675 | 0.9352 | 1.9309 | 1 | 0 | 1 | 1079 | 1179 | 585 | 598 | 0 | 3441 | 0.31 | 0.34 | 0.17 | 0.17 | 0 | 0.34 | 0.9134 | 0.0553 | 0.9467 | 1.9274 | 0 | 1 | 0 | 1 | 1079 | 1179 | 585 | 598 | 0 | 3441 | 0.31 | 0.34 | 0.17 | 0.17 | 0 | 0.34 | 0.9134 | 0.0553 | 0.9467 | 1.9274 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 26 | 18 | 17 | 31 | 12 | 11 | 34 | 34 | 12 | 12 | 63 | 45 | 19 | 7 | 28 | 15 | 20 | 13 | 23 | 57 | 6 | 24 | 6 | 39 | 8 | 9 | 11 | 25 | 45 | 20 | 19 | 23 | 10 | 15 | 11 | 22 | 10 | 12 | 19 | 4 | 6 | 3 | 52 | 6 | 2 | 35 | 1 | 15 | 11 | 18 | 2 | 6 | 58 | 21 | 4 | 17 | 0 | 3 | 1 | 12 | 30 | 0 | 1 | 8 |
| NA | NC_077728 | NC_077728.1 | Maize rough dwarf virus structural protein P4 (QK487_s4gp1) gene; complete cds. | 1200 | 1300 | 530 | 587 | 0 | 3617 | 0.33 | 0.36 | 0.15 | 0.16 | 0 | 0.31 | 0.8858 | 0.091 | 0.913 | 1.8904 | 1 | 0 | 1 | 1171 | 1265 | 512 | 562 | 0 | 3510 | 0.33 | 0.36 | 0.15 | 0.16 | 0 | 0.31 | 0.8861 | 0.0851 | 0.9184 | 1.8873 | 0 | 1 | 0 | 1 | 1171 | 1265 | 512 | 562 | 0 | 3510 | 0.33 | 0.36 | 0.15 | 0.16 | 0 | 0.31 | 0.8861 | 0.0851 | 0.9184 | 1.8873 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 22 | 19 | 13 | 24 | 6 | 10 | 16 | 48 | 12 | 7 | 68 | 54 | 29 | 8 | 37 | 22 | 43 | 12 | 17 | 69 | 4 | 19 | 9 | 57 | 8 | 8 | 2 | 32 | 40 | 11 | 23 | 22 | 6 | 21 | 8 | 17 | 6 | 7 | 20 | 3 | 12 | 1 | 65 | 6 | 4 | 32 | 3 | 25 | 21 | 23 | 4 | 3 | 47 | 14 | 2 | 9 | 0 | 0 | 1 | 7 | 27 | 1 | 0 | 4 |
| NA | NC_077725 | NC_077725.1 | Maize rough dwarf virus minor structural protein P5-1 (QK487_s5gp1) and minor structural protein P5-2 (QK487_s5gp2) genes; complete cds. | 1021 | 967 | 620 | 556 | 0 | 3164 | 0.32 | 0.31 | 0.2 | 0.18 | 0 | 0.37 | 0.9077 | 0.0816 | 0.9219 | 1.9508 | 2 | 0 | 2 | 1120 | 1034 | 680 | 592 | 0 | 3426 | 0.33 | 0.3 | 0.2 | 0.17 | 0 | 0.37 | 0.9044 | 0.1199 | 0.8876 | 1.9491 | 368 | 2 | 0 | 2 | 1120 | 1034 | 680 | 592 | 0 | 3426 | 0.33 | 0.3 | 0.2 | 0.17 | 0 | 0.37 | 0.9044 | 0.1199 | 0.8876 | 1.9491 | 368 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 27 | 19 | 18 | 26 | 16 | 11 | 16 | 43 | 13 | 6 | 36 | 56 | 28 | 13 | 16 | 30 | 33 | 9 | 26 | 40 | 12 | 17 | 17 | 39 | 9 | 13 | 12 | 29 | 21 | 21 | 26 | 23 | 16 | 10 | 22 | 31 | 9 | 7 | 23 | 7 | 14 | 5 | 66 | 4 | 4 | 17 | 1 | 16 | 22 | 28 | 7 | 4 | 25 | 17 | 3 | 11 | 0 | 2 | 2 | 11 | 24 | 0 | 2 | 11 |
| NA | NC_077730 | NC_077730.1 | Maize rough dwarf virus nonstructural protein P6 (QK487_s6gp1) gene; complete cds. | 830 | 818 | 525 | 472 | 0 | 2645 | 0.31 | 0.31 | 0.2 | 0.18 | 0 | 0.38 | 0.905 | 0.0604 | 0.9423 | 1.9551 | 1 | 0 | 1 | 751 | 738 | 466 | 424 | 0 | 2379 | 0.32 | 0.31 | 0.2 | 0.18 | 0 | 0.37 | 0.9055 | 0.0559 | 0.9463 | 1.9531 | 0 | 1 | 0 | 1 | 751 | 738 | 466 | 424 | 0 | 2379 | 0.32 | 0.31 | 0.2 | 0.18 | 0 | 0.37 | 0.9055 | 0.0559 | 0.9463 | 1.9531 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 25 | 21 | 10 | 26 | 9 | 12 | 23 | 27 | 13 | 5 | 33 | 49 | 16 | 2 | 9 | 34 | 35 | 13 | 20 | 24 | 8 | 6 | 5 | 41 | 3 | 9 | 12 | 21 | 9 | 5 | 16 | 19 | 7 | 3 | 5 | 14 | 5 | 6 | 7 | 5 | 8 | 3 | 32 | 4 | 5 | 26 | 0 | 8 | 5 | 10 | 5 | 6 | 12 | 12 | 1 | 6 | 0 | 0 | 1 | 7 | 25 | 0 | 1 | 4 |
| NA | NC_077721 | NC_077721.1 | Maize rough dwarf virus nonstructural protein P7-1 (QK487_s7gp1) and nonstructural protein P7-2 (QK487_s7gp2) genes; complete cds. | 656 | 764 | 369 | 404 | 0 | 2193 | 0.3 | 0.35 | 0.17 | 0.18 | 0 | 0.35 | 0.9106 | 0.1213 | 0.886 | 1.933 | 2 | 0 | 2 | 615 | 701 | 336 | 367 | 0 | 2019 | 0.3 | 0.35 | 0.16 | 0.18 | 0 | 0.35 | 0.8996 | 0.1526 | 0.8614 | 1.9246 | 0 | 2 | 0 | 2 | 615 | 701 | 336 | 367 | 0 | 2019 | 0.3 | 0.35 | 0.16 | 0.18 | 0 | 0.35 | 0.8996 | 0.1526 | 0.8614 | 1.9246 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 20 | 10 | 5 | 21 | 8 | 3 | 16 | 25 | 6 | 9 | 28 | 30 | 9 | 2 | 17 | 15 | 17 | 11 | 6 | 34 | 2 | 8 | 5 | 38 | 3 | 6 | 7 | 16 | 23 | 8 | 8 | 14 | 4 | 10 | 3 | 15 | 5 | 7 | 7 | 4 | 10 | 1 | 23 | 4 | 4 | 26 | 1 | 14 | 8 | 11 | 3 | 1 | 28 | 16 | 3 | 4 | 1 | 0 | 2 | 6 | 16 | 1 | 0 | 5 |
| NA | NC_077723 | NC_077723.1 | Maize rough dwarf virus minor core structural protein P8 (QK487_s8gp1) gene; complete cds. | 596 | 660 | 348 | 332 | 0 | 1936 | 0.31 | 0.34 | 0.18 | 0.17 | 0 | 0.35 | 0.9025 | 0.0745 | 0.9285 | 1.9338 | 1 | 0 | 1 | 559 | 597 | 325 | 295 | 0 | 1776 | 0.31 | 0.34 | 0.18 | 0.17 | 0 | 0.35 | 0.9025 | 0.0813 | 0.922 | 1.9322 | 0 | 1 | 0 | 1 | 559 | 597 | 325 | 295 | 0 | 1776 | 0.31 | 0.34 | 0.18 | 0.17 | 0 | 0.35 | 0.9025 | 0.0813 | 0.922 | 1.9322 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 15 | 11 | 9 | 15 | 4 | 6 | 12 | 25 | 6 | 3 | 28 | 29 | 13 | 2 | 11 | 12 | 15 | 4 | 17 | 26 | 0 | 8 | 3 | 15 | 1 | 12 | 9 | 20 | 15 | 8 | 6 | 9 | 0 | 7 | 12 | 16 | 3 | 4 | 9 | 4 | 2 | 3 | 23 | 6 | 3 | 24 | 0 | 10 | 3 | 12 | 4 | 2 | 24 | 15 | 4 | 7 | 0 | 1 | 1 | 7 | 11 | 1 | 0 | 5 |
| NA | NC_077722 | NC_077722.1 | Maize rough dwarf virus nonstructural protein P9-1 (QK487_s9gp1) and nonstructural protein P9-2 (QK487_s9gp2) genes; complete cds. | 598 | 651 | 333 | 318 | 0 | 1900 | 0.31 | 0.34 | 0.18 | 0.17 | 0 | 0.34 | 0.9055 | 0.0655 | 0.9368 | 1.9263 | 2 | 0 | 2 | 538 | 566 | 290 | 280 | 0 | 1674 | 0.32 | 0.35 | 0.17 | 0.17 | 0 | 0.33 | 0.8995 | 0.1669 | 0.8475 | 1.9125 | 0 | 2 | 0 | 2 | 538 | 566 | 290 | 280 | 0 | 1674 | 0.32 | 0.35 | 0.17 | 0.17 | 0 | 0.33 | 0.8995 | 0.1669 | 0.8475 | 1.9125 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 10 | 9 | 5 | 12 | 4 | 5 | 8 | 35 | 5 | 0 | 22 | 33 | 11 | 3 | 3 | 17 | 15 | 6 | 13 | 27 | 3 | 12 | 5 | 23 | 6 | 8 | 5 | 12 | 17 | 9 | 8 | 13 | 5 | 9 | 9 | 12 | 0 | 4 | 7 | 2 | 2 | 2 | 24 | 3 | 2 | 17 | 1 | 10 | 8 | 6 | 4 | 2 | 15 | 11 | 1 | 5 | 0 | 1 | 1 | 11 | 15 | 1 | 1 | 3 |
| NA | NC_077724 | NC_077724.1 | Maize rough dwarf virus major outer structural protein P10 (QK487_s10gp1) gene; complete cds. | 586 | 563 | 328 | 325 | 0 | 1802 | 0.33 | 0.31 | 0.18 | 0.18 | 0 | 0.36 | 0.9182 | 0.0246 | 0.9758 | 1.9444 | 1 | 0 | 1 | 559 | 524 | 302 | 292 | 0 | 1677 | 0.33 | 0.31 | 0.18 | 0.17 | 0 | 0.35 | 0.9177 | 0.0492 | 0.9521 | 1.9372 | 0 | 1 | 0 | 1 | 559 | 524 | 302 | 292 | 0 | 1677 | 0.33 | 0.31 | 0.18 | 0.17 | 0 | 0.35 | 0.9177 | 0.0492 | 0.9521 | 1.9372 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 7 | 9 | 11 | 24 | 7 | 4 | 12 | 29 | 8 | 5 | 16 | 26 | 8 | 2 | 12 | 14 | 11 | 3 | 7 | 15 | 5 | 15 | 5 | 27 | 4 | 8 | 9 | 16 | 12 | 7 | 6 | 10 | 6 | 9 | 10 | 11 | 3 | 9 | 4 | 1 | 8 | 2 | 35 | 0 | 0 | 21 | 0 | 7 | 5 | 13 | 1 | 4 | 18 | 6 | 1 | 3 | 0 | 0 | 0 | 8 | 14 | 0 | 1 | 5 |