| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA | NC_055268 | NC_055268.1 | Rotavirus J strain BO4351/Ms/2014 VP1 (VP1 Pol) gene; complete cds. | 1251 | 891 | 687 | 704 | 0 | 3533 | 0.35 | 0.25 | 0.19 | 0.2 | 0 | 0.39 | 0.905 | 0.1803 | 0.844 | 1.9547 | 1 | 0 | 1 | 1243 | 885 | 678 | 701 | 0 | 3507 | 0.35 | 0.25 | 0.19 | 0.2 | 0 | 0.39 | 0.905 | 0.1849 | 0.8396 | 1.9543 | 0 | 1 | 0 | 1 | 1243 | 885 | 678 | 701 | 0 | 3507 | 0.35 | 0.25 | 0.19 | 0.2 | 0 | 0.39 | 0.905 | 0.1849 | 0.8396 | 1.9543 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 32 | 33 | 18 | 15 | 38 | 27 | 16 | 26 | 12 | 8 | 41 | 48 | 46 | 19 | 5 | 22 | 17 | 7 | 19 | 23 | 23 | 8 | 15 | 41 | 19 | 4 | 16 | 19 | 34 | 15 | 28 | 15 | 15 | 35 | 32 | 22 | 12 | 5 | 20 | 6 | 5 | 3 | 60 | 13 | 4 | 33 | 4 | 35 | 1 | 14 | 17 | 21 | 23 | 3 | 10 | 23 | 0 | 2 | 8 | 2 | 26 | 1 | 0 | 5 |
| NA | NC_055265 | NC_055265.1 | Rotavirus J strain BO4351/Ms/2014 VP2 (VP2) gene; complete cds. | 1007 | 777 | 613 | 613 | 0 | 3010 | 0.33 | 0.26 | 0.2 | 0.2 | 0 | 0.41 | 0.9127 | 0.1289 | 0.8858 | 1.9679 | 1 | 0 | 1 | 990 | 769 | 599 | 603 | 0 | 2961 | 0.33 | 0.26 | 0.2 | 0.2 | 0 | 0.41 | 0.9127 | 0.129 | 0.8851 | 1.9675 | 0 | 1 | 0 | 1 | 990 | 769 | 599 | 603 | 0 | 2961 | 0.33 | 0.26 | 0.2 | 0.2 | 0 | 0.41 | 0.9127 | 0.129 | 0.8851 | 1.9675 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 26 | 13 | 9 | 14 | 30 | 21 | 20 | 35 | 9 | 7 | 42 | 31 | 32 | 10 | 1 | 31 | 7 | 10 | 23 | 17 | 15 | 4 | 17 | 44 | 17 | 10 | 14 | 16 | 18 | 10 | 10 | 13 | 20 | 22 | 19 | 32 | 3 | 0 | 11 | 8 | 0 | 4 | 31 | 8 | 0 | 36 | 3 | 42 | 5 | 7 | 11 | 19 | 27 | 8 | 13 | 31 | 0 | 4 | 6 | 4 | 34 | 1 | 0 | 2 |
| NA | NC_055264 | NC_055264.1 | Rotavirus J strain BO4351/Ms/2014 VP4 (VP4) gene; complete cds. | 948 | 629 | 443 | 492 | 0 | 2512 | 0.38 | 0.25 | 0.18 | 0.2 | 0 | 0.37 | 0.9077 | 0.2547 | 0.782 | 1.933 | 1 | 0 | 1 | 936 | 621 | 435 | 489 | 0 | 2481 | 0.38 | 0.25 | 0.18 | 0.2 | 0 | 0.37 | 0.9074 | 0.2608 | 0.7765 | 1.9329 | 0 | 1 | 0 | 1 | 936 | 621 | 435 | 489 | 0 | 2481 | 0.38 | 0.25 | 0.18 | 0.2 | 0 | 0.37 | 0.9074 | 0.2608 | 0.7765 | 1.9329 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 15 | 17 | 18 | 21 | 21 | 17 | 9 | 22 | 5 | 15 | 42 | 34 | 24 | 17 | 8 | 17 | 9 | 7 | 11 | 26 | 8 | 14 | 9 | 27 | 10 | 9 | 8 | 15 | 21 | 22 | 10 | 4 | 10 | 37 | 28 | 21 | 2 | 2 | 10 | 2 | 4 | 4 | 50 | 9 | 0 | 10 | 3 | 21 | 2 | 7 | 6 | 8 | 17 | 7 | 2 | 25 | 0 | 1 | 4 | 3 | 16 | 0 | 1 | 3 |
| NA | NC_055269 | NC_055269.1 | Rotavirus J strain BO4351/Ms/2014 VP3 (VP3) gene; complete cds. | 809 | 595 | 379 | 417 | 0 | 2200 | 0.37 | 0.27 | 0.17 | 0.19 | 0 | 0.36 | 0.9098 | 0.2002 | 0.8222 | 1.9329 | 1 | 0 | 1 | 795 | 584 | 364 | 405 | 0 | 2148 | 0.37 | 0.27 | 0.17 | 0.19 | 0 | 0.36 | 0.9098 | 0.2063 | 0.8167 | 1.9294 | 0 | 1 | 0 | 1 | 795 | 584 | 364 | 405 | 0 | 2148 | 0.37 | 0.27 | 0.17 | 0.19 | 0 | 0.36 | 0.9098 | 0.2063 | 0.8167 | 1.9294 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 13 | 16 | 11 | 12 | 18 | 9 | 5 | 27 | 2 | 7 | 32 | 36 | 11 | 5 | 7 | 22 | 14 | 6 | 15 | 20 | 9 | 8 | 6 | 32 | 16 | 4 | 5 | 6 | 23 | 12 | 11 | 11 | 6 | 30 | 12 | 17 | 12 | 0 | 18 | 3 | 2 | 3 | 41 | 5 | 5 | 18 | 3 | 28 | 4 | 8 | 8 | 6 | 12 | 7 | 2 | 12 | 0 | 3 | 3 | 4 | 8 | 0 | 1 | 4 |
| NA | NC_055270 | NC_055270.1 | Rotavirus J strain BO4351/Ms/2014 NSP1 (NSP1) gene; complete cds. | 480 | 313 | 238 | 291 | 0 | 1322 | 0.36 | 0.24 | 0.18 | 0.22 | 0 | 0.4 | 0.9077 | 0.3108 | 0.735 | 1.9488 | 1 | 0 | 1 | 445 | 281 | 218 | 262 | 0 | 1206 | 0.37 | 0.23 | 0.18 | 0.22 | 0 | 0.4 | 0.9085 | 0.3176 | 0.7318 | 1.945 | 0 | 1 | 0 | 1 | 445 | 281 | 218 | 262 | 0 | 1206 | 0.37 | 0.23 | 0.18 | 0.22 | 0 | 0.4 | 0.9085 | 0.3176 | 0.7318 | 1.945 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 12 | 4 | 6 | 11 | 6 | 7 | 9 | 2 | 7 | 12 | 21 | 7 | 7 | 1 | 11 | 3 | 4 | 8 | 7 | 3 | 4 | 1 | 12 | 2 | 4 | 6 | 8 | 9 | 11 | 8 | 5 | 3 | 10 | 9 | 8 | 4 | 0 | 7 | 1 | 2 | 0 | 24 | 5 | 4 | 6 | 2 | 17 | 7 | 8 | 4 | 8 | 6 | 3 | 1 | 13 | 0 | 3 | 3 | 0 | 11 | 0 | 1 | 0 |
| NA | NC_055271 | NC_055271.1 | Rotavirus J strain BO4351/Ms/2014 VP6 (VP6) and ORF-X (ORF-X) genes; complete cds. | 367 | 339 | 292 | 279 | 0 | 1277 | 0.29 | 0.27 | 0.23 | 0.22 | 0 | 0.45 | 0.9207 | 0.0624 | 0.9396 | 1.9911 | 2 | 0 | 2 | 345 | 314 | 271 | 258 | 0 | 1188 | 0.29 | 0.26 | 0.23 | 0.22 | 0 | 0.45 | 0.9185 | 0.0716 | 0.9311 | 1.9903 | 0 | 2 | 0 | 2 | 345 | 314 | 271 | 258 | 0 | 1188 | 0.29 | 0.26 | 0.23 | 0.22 | 0 | 0.45 | 0.9185 | 0.0716 | 0.9311 | 1.9903 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 9 | 2 | 2 | 10 | 7 | 3 | 17 | 16 | 3 | 4 | 15 | 10 | 16 | 4 | 2 | 14 | 7 | 7 | 4 | 10 | 3 | 7 | 6 | 17 | 11 | 2 | 2 | 2 | 7 | 8 | 9 | 11 | 13 | 2 | 19 | 5 | 2 | 1 | 2 | 4 | 1 | 2 | 4 | 7 | 2 | 7 | 2 | 12 | 2 | 1 | 3 | 9 | 7 | 3 | 6 | 10 | 0 | 1 | 5 | 2 | 11 | 0 | 1 | 3 |
| NA | NC_055272 | NC_055272.1 | Rotavirus J strain BO4351/Ms/2014 NSP3 (NSP3) gene; complete cds. | 396 | 299 | 197 | 216 | 0 | 1108 | 0.36 | 0.27 | 0.18 | 0.19 | 0 | 0.37 | 0.9116 | 0.1856 | 0.8335 | 1.9433 | 1 | 0 | 1 | 360 | 268 | 172 | 196 | 0 | 996 | 0.36 | 0.27 | 0.17 | 0.2 | 0 | 0.37 | 0.9012 | 0.2117 | 0.811 | 1.9393 | 0 | 1 | 0 | 1 | 360 | 268 | 172 | 196 | 0 | 996 | 0.36 | 0.27 | 0.17 | 0.2 | 0 | 0.37 | 0.9012 | 0.2117 | 0.811 | 1.9393 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 7 | 9 | 1 | 7 | 4 | 8 | 8 | 20 | 2 | 2 | 13 | 21 | 10 | 3 | 1 | 6 | 3 | 3 | 10 | 9 | 3 | 4 | 2 | 11 | 6 | 4 | 5 | 7 | 5 | 9 | 6 | 7 | 2 | 9 | 5 | 7 | 3 | 1 | 4 | 2 | 3 | 2 | 14 | 1 | 1 | 5 | 0 | 15 | 5 | 0 | 1 | 3 | 6 | 0 | 3 | 9 | 0 | 1 | 2 | 2 | 9 | 1 | 0 | 0 |
| NA | NC_055266 | NC_055266.1 | Rotavirus J strain BO4351/Ms/2014 NSP2 (NSP2) gene; complete cds. | 347 | 248 | 188 | 234 | 0 | 1017 | 0.34 | 0.24 | 0.18 | 0.23 | 0 | 0.41 | 0.9024 | 0.2754 | 0.7591 | 1.9637 | 1 | 0 | 1 | 308 | 226 | 161 | 205 | 0 | 900 | 0.34 | 0.25 | 0.18 | 0.23 | 0 | 0.41 | 0.9024 | 0.2738 | 0.7596 | 1.9603 | 0 | 1 | 0 | 1 | 308 | 226 | 161 | 205 | 0 | 900 | 0.34 | 0.25 | 0.18 | 0.23 | 0 | 0.41 | 0.9024 | 0.2738 | 0.7596 | 1.9603 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 11 | 10 | 1 | 5 | 7 | 6 | 10 | 11 | 1 | 1 | 5 | 15 | 7 | 2 | 3 | 6 | 6 | 5 | 6 | 7 | 6 | 3 | 2 | 19 | 4 | 3 | 6 | 2 | 3 | 8 | 5 | 3 | 1 | 6 | 6 | 3 | 1 | 0 | 3 | 1 | 1 | 1 | 17 | 1 | 3 | 7 | 2 | 9 | 2 | 6 | 1 | 10 | 4 | 5 | 4 | 8 | 0 | 0 | 1 | 1 | 4 | 1 | 0 | 2 |
| NA | NC_055267 | NC_055267.1 | Rotavirus J strain BO4351/Ms/2014 VP7 (VP7) gene; complete cds. | 266 | 225 | 143 | 159 | 0 | 793 | 0.34 | 0.28 | 0.18 | 0.2 | 0 | 0.38 | 0.8975 | 0.1365 | 0.8726 | 1.9547 | 1 | 0 | 1 | 248 | 214 | 128 | 148 | 0 | 738 | 0.34 | 0.29 | 0.17 | 0.2 | 0 | 0.37 | 0.9012 | 0.1461 | 0.8639 | 1.9498 | 0 | 1 | 0 | 1 | 248 | 214 | 128 | 148 | 0 | 738 | 0.34 | 0.29 | 0.17 | 0.2 | 0 | 0.37 | 0.9012 | 0.1461 | 0.8639 | 1.9498 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 4 | 3 | 4 | 4 | 6 | 1 | 3 | 5 | 0 | 5 | 9 | 9 | 7 | 5 | 1 | 4 | 1 | 1 | 5 | 9 | 2 | 2 | 4 | 16 | 3 | 1 | 1 | 4 | 10 | 6 | 5 | 8 | 3 | 9 | 9 | 4 | 1 | 0 | 3 | 4 | 2 | 0 | 11 | 1 | 0 | 4 | 0 | 6 | 8 | 0 | 5 | 5 | 4 | 0 | 3 | 7 | 1 | 1 | 0 | 0 | 6 | 0 | 0 | 1 |
| NA | NC_055263 | NC_055263.1 | Rotavirus J strain BO4351/Ms/2014 NSP4 (NSP4) gene; complete cds. | 279 | 175 | 128 | 161 | 0 | 743 | 0.38 | 0.24 | 0.17 | 0.22 | 0 | 0.39 | 0.8924 | 0.3433 | 0.7111 | 1.9371 | 1 | 0 | 1 | 255 | 147 | 101 | 130 | 0 | 633 | 0.4 | 0.23 | 0.16 | 0.21 | 0 | 0.36 | 0.895 | 0.3942 | 0.6767 | 1.9091 | 0 | 1 | 0 | 1 | 255 | 147 | 101 | 130 | 0 | 633 | 0.4 | 0.23 | 0.16 | 0.21 | 0 | 0.36 | 0.895 | 0.3942 | 0.6767 | 1.9091 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 5 | 2 | 6 | 5 | 6 | 0 | 3 | 0 | 2 | 9 | 17 | 7 | 1 | 3 | 7 | 2 | 3 | 0 | 4 | 4 | 0 | 1 | 9 | 5 | 2 | 6 | 4 | 4 | 4 | 6 | 4 | 2 | 7 | 3 | 1 | 2 | 0 | 4 | 1 | 0 | 0 | 10 | 1 | 0 | 3 | 2 | 3 | 0 | 1 | 0 | 1 | 4 | 0 | 2 | 3 | 0 | 1 | 2 | 0 | 9 | 1 | 0 | 3 |
| NA | NC_055273 | NC_055273.1 | Rotavirus J strain BO4351/Ms/2014 NSP5 (NSP5) and ORF-Y (ORF-Y) genes; complete cds. | 219 | 140 | 125 | 136 | 0 | 620 | 0.35 | 0.23 | 0.2 | 0.22 | 0 | 0.42 | 0.8937 | 0.2622 | 0.7792 | 1.961 | 2 | 0 | 2 | 187 | 113 | 94 | 104 | 0 | 498 | 0.38 | 0.23 | 0.19 | 0.21 | 0 | 0.4 | 0.8899 | 0.2972 | 0.7541 | 1.9421 | 0 | 2 | 0 | 2 | 187 | 113 | 94 | 104 | 0 | 498 | 0.38 | 0.23 | 0.19 | 0.21 | 0 | 0.4 | 0.8899 | 0.2972 | 0.7541 | 1.9421 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 4 | 8 | 5 | 3 | 9 | 9 | 2 | 4 | 0 | 0 | 2 | 12 | 11 | 2 | 3 | 4 | 4 | 0 | 2 | 3 | 2 | 0 | 7 | 6 | 2 | 1 | 0 | 2 | 3 | 1 | 1 | 2 | 2 | 1 | 2 | 3 | 0 | 0 | 1 | 2 | 1 | 1 | 13 | 0 | 0 | 5 | 1 | 2 | 0 | 2 | 1 | 2 | 3 | 0 | 0 | 4 | 0 | 0 | 1 | 0 | 3 | 0 | 1 | 1 |