| Assembly Assembly | Locus_ID Locus_ID | Version Version | Definition Sequence description | bp_chromo_A Total number of 'A' nucleotides in the whole sequence | bp_chromo_T Total number of 'T' nucleotides in the whole sequence | bp_chromo_C Total number of 'C' nucleotides in the whole sequence | bp_chromo_G Total number of 'G' nucleotides in the whole sequence | bp_chromo_N Total number of 'N' nucleotides in the whole sequence | bp_chromo_tot Total number of nucleotides in the whole sequence | fr_chromo_A Frequency of 'A' nucleotides in the whole sequence | fr_chromo_T Frequency of 'T' nucleotides in the whole sequence | fr_chromo_C Frequency of 'C' nucleotides in the whole sequence | fr_chromo_G Frequency of 'G' nucleotides in the whole sequence | fr_chromo_N Frequency of 'N' nucleotides in the whole sequence | GC_chromo Percentage of ‘G’ + ‘C’ nucleotides in the whole sequence | topo_entropy_chromo Topological entropy of the whole sequence | chargaff_pf_chromo Chargaff's second parity rule score (method1) of the whole sequence | chargaff_ct_chromo Chargaff's second parity rule score (method2) of the whole sequencee | shannon_chromo Shannon entropy of the whole sequence | n_gene_pos Number of genes in the positive strand | n_gene_neg Number of genes in the negative strand | n_gene_tot Total number of genes in the chromosome | bp_gene_A Number of 'A' bases in total genes | bp_gene_T Number of 'T' bases in total genes | bp_gene_C Number of 'C' bases in total genes | bp_gene_G Number of 'G' bases in total genes | bp_gene_N Number of 'N' bases in total genes | bp_gene_tot Total number of bases in total genes | fr_gene_A Frequency of 'A' bases among total gene bases | fr_gene_T Frequency of 'T' bases among total gene bases | fr_gene_C Frequency of 'C' bases among total gene bases | fr_gene_G Frequency of 'G' bases among total gene bases | fr_gene_N Frequency of 'N' bases among total gene bases | GC_gene Percentage of 'G' and 'C' bases in total genes | topo_entropy_gene Topological entropy calculated from total gene sequences | chargaff_pf_gene Chargaff's second parity rule score (method1) for total genes | chargaff_ct_gene Chargaff's second parity rule score (method2)for total genes | shannon_gene Shannon entropy score for total genes | bp_gene_overlap_tot Number of bases overlapping between genes on two strands | n_cds_pos Number of CDS in the positive strand | n_cds_neg Number of CDS in the negative strand | n_cds_tot Total number of CDS in the chromosome | bp_cds_A Number of 'A' bases in total CDS (coding sequences) | bp_cds_T Number of 'T' bases in total CDS | bp_cds_C Number of 'C' bases in total CDS | bp_cds_G Number of 'G' bases in total CDS | bp_cds_N Number of 'N' bases in total CDS | bp_cds_tot Total bases in total CDS | fr_cds_A Frequency of 'A' bases among total CDS bases | fr_cds_T Frequency of 'T' bases among total CDS bases | fr_cds_C Frequency of 'C' bases among total CDS bases | fr_cds_G Frequency of 'G' bases among total CDS bases | fr_cds_N Frequency of 'N' bases among total CDS bases | GC_cds Percentage of 'G' and 'C' bases in total CDS | topo_entropy_cds Topological entropy calculated from total CDS sequences | chargaff_pf_cds Chargaff's second parity rule score (method1) for total CDS | chargaff_ct_cds Chargaff's second parity rule score (method2) for total CDS | shannon_cds Shannon entropy score for total CDS | bp_cds_overlap_tot Number of bases overlapping between CDS on two strands | bp_cds_intron_A Number of 'A' bases in total introns between CDS | bp_cds_intron_T Number of 'T' bases in total introns between CDS | bp_cds_intron_C Number of 'C' bases in total introns between CDS | bp_cds_intron_G Number of 'G' bases in total introns between CDS | bp_cds_intron_N Number of 'N' bases in total introns between CDS | bp_cds_intron_tot Total bases in total introns between CDS | fr_cds_intron_A Frequency of 'A' bases in total introns between CDS | fr_cds_intron_T Frequency of 'T' bases in total introns between CDS | fr_cds_intron_C Frequency of 'C' bases in total introns between CDS | fr_cds_intron_G Frequency of 'G' bases in total introns between CDS | fr_cds_intron_N Frequency of 'N' bases in total introns between CDS | GC_cds_intron Percentage of 'G' and 'C' bases in total introns between CDS | topo_entropy_cds_intron Topological entropy calculated from total intron sequences between CDS | chargaff_pf_cds_intron Chargaff's second parity rule score (method1) for total introns between CDS | chargaff_ct_cds_intron Chargaff's second parity rule score (method2) for total introns between CDS | shannon_cds_intron Shannon entropy score for total introns between CDS | bp_cds_intron_overlap_tot Number of bases overlapping between introns between CDS on two strands | n_ncRNA_pos Number of ncRNA in the positive strand | n_ncRNA_neg Number of ncRNA in the negative strand | n_ncRNA_tot Total number of ncRNA in the chromosome | bp_ncRNA_A Number of 'A' bases in total ncRNA | bp_ncRNA_T bp_ncRNA_T | bp_ncRNA_C Number of 'C' bases in total ncRNA | bp_ncRNA_G Number of 'G' bases in total ncRNA | bp_ncRNA_N Number of 'N' bases in total ncRNA | bp_ncRNA_tot Total bases in total ncRNA | fr_ncRNA_A Frequency of 'A' bases among total ncRNA bases | fr_ncRNA_T Frequency of 'T' bases among total ncRNA bases | fr_ncRNA_C Frequency of 'C' bases among total ncRNA bases | fr_ncRNA_G Frequency of 'G' bases among total ncRNA bases | fr_ncRNA_N Frequency of 'N' bases among total ncRNA bases | GC_ncRNA Percentage of 'G' and 'C' bases in total ncRNA | topo_entropy_ncRNA Topological entropy calculated from total ncRNA sequences | chargaff_pf_ncRNA Chargaff's second parity rule score (method1) for total ncRNA | chargaff_ct_ncRNA Chargaff's second parity rule score (method2) for total ncRNA | shannon_ncRNA Shannon entropy score for total ncRNA | bp_ncRNA_overlap_tot Number of bases overlapping between ncRNA on two strands | bp_nc_intron_A Number of 'A' bases in total introns between ncRNA | bp_nc_intron_T Number of 'T' bases in total introns between ncRNA | bp_nc_intron_C Number of 'C' bases in total introns between ncRNA | bp_nc_intron_G Number of 'G' bases in total introns between ncRNA | bp_nc_intron_N Number of 'N' bases in total introns between ncRNA | bp_nc_intron_tot Total bases in total introns between ncRNA | fr_nc_intron_A Frequency of 'A' bases in total introns between ncRNA | fr_nc_intron_T Frequency of 'T' bases in total introns between ncRNA | fr_nc_intron_C Frequency of 'C' bases in total introns between ncRNA | fr_nc_intron_G Frequency of 'G' bases in total introns between ncRNA | fr_nc_intron_N Frequency of 'N' bases in total introns between ncRNA | GC_nc_intron Percentage of 'G' and 'C' bases in total introns between ncRNA | topo_entropy_nc_intron Topological entropy calculated from total intron sequences between ncRNA | chargaff_pf_nc_intron Chargaff's second parity rule score (method1) for total introns between ncRNA | chargaff_ct_nc_intron Chargaff's second parity rule score (method2) for total introns between ncRNA | shannon_nc_intron Shannon entropy score for total introns between ncRNA | bp_nc_intron_overlap_tot Number of bases overlapping between introns between ncRNA on two strands | n_tRNA_pos Number of tRNA in the positive strand | n_tRNA_neg Number of tRNA in the negative strand | n_tRNA_tot Total number of tRNA in the chromosome | bp_tRNA_A Number of 'A' bases in total tRNA | bp_tRNA_T Number of 'T' bases in total tRNA | bp_tRNA_C Number of 'C' bases in total tRNA | bp_tRNA_G Number of 'G' bases in total tRNA | bp_tRNA_N Number of 'N' bases in total tRNA | bp_tRNA_tot Total bases in total tRNA | fr_tRNA_A Frequency of 'A' bases among total tRNA bases | fr_tRNA_T Frequency of 'T' bases among total tRNA bases | fr_tRNA_C Frequency of 'C' bases among total tRNA bases | fr_tRNA_G Frequency of 'G' bases among total tRNA bases | fr_tRNA_N Frequency of 'N' bases among total tRNA bases | GC_tRNA Percentage of 'G' and 'C' bases in total tRNA | topo_entropy_tRNA Topological entropy calculated from total tRNA sequences | chargaff_pf_tRNA Chargaff's second parity rule score (method1) for total tRNA | chargaff_ct_tRNA Chargaff's second parity rule score (method2) for total tRNA | shannon_tRNA Shannon entropy score for total tRNA | bp_tRNA_overlap_tot Number of bases overlapping between tRNA on two strands | n_rRNA_pos Number of rRNA in the positive strand | n_rRNA_neg Number of rRNA in the negative strand | n_rRNA_tot Total number of rRNA in the chromosome | bp_rRNA_A Number of 'A' bases in total rRNA | bp_rRNA_T Number of 'T' bases in total rRNA | bp_rRNA_C Number of 'C' bases in total rRNA | bp_rRNA_G Number of 'G' bases in total rRNA | bp_rRNA_N Number of 'N' bases in total rRNA | bp_rRNA_tot Total bases in total rRNA | fr_rRNA_A Frequency of 'A' bases among total rRNA bases | fr_rRNA_T Frequency of 'T' bases among total rRNA bases | fr_rRNA_C Frequency of 'C' bases among total rRNA bases | fr_rRNA_G Frequency of 'G' bases among total rRNA bases | fr_rRNA_N Frequency of 'N' bases among total rRNA bases | GC_rRNA Percentage of 'G' and 'C' bases in total rRNA | topo_entropy_rRNA Topological entropy calculated from total rRNA sequences | chargaff_pf_rRNA Chargaff's second parity rule score (method1) for total rRNA | chargaff_ct_rRNA Chargaff's second parity rule score (method2) total rRNA | shannon_rRNA Shannon entropy score for total rRNA | bp_rRNA_overlap_tot Number of bases overlapping between rRNA on two strands | ATG ATG | AAG AAG | GTA GTA | ACT ACT | GCA GCA | GAG GAG | GCT GCT | ATT ATT | TCC TCC | TGG TGG | AAT AAT | GAA GAA | TCA TCA | ACG ACG | AGT AGT | AAC AAC | TCT TCT | GTG GTG | TTC TTC | TTT TTT | CTG CTG | GGT GGT | CTC CTC | GAT GAT | CAG CAG | ACC ACC | CTA CTA | TTG TTG | TAT TAT | GGA GGA | ATC ATC | CTT CTT | GTC GTC | ATA ATA | ACA ACA | GAC GAC | CAC CAC | CCC CCC | TAC TAC | GCC GCC | AGC AGC | CGC CGC | AAA AAA | GGC GGC | TGC TGC | GTT GTT | GGG GGG | AGA AGA | TGT TGT | CAT CAT | TCG TCG | GCG GCG | TTA TTA | CCT CCT | AGG AGG | CCA CCA | TAG TAG | CGG CGG | CCG CCG | CGT CGT | CAA CAA | TAA TAA | TGA TGA | CGA CGA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NA | NC_014714 | NC_014714.1 | Southern rice black-streaked dwarf virus segment 1; complete genome. | 1471 | 1578 | 666 | 785 | 0 | 4500 | 0.33 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.9124 | 0.1171 | 0.8903 | 1.9049 | 1 | 0 | 1 | 1444 | 1547 | 644 | 760 | 0 | 4395 | 0.33 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.9117 | 0.1171 | 0.8904 | 1.9016 | 0 | 1 | 0 | 1 | 1444 | 1547 | 644 | 760 | 0 | 4395 | 0.33 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.9117 | 0.1171 | 0.8904 | 1.9016 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 38 | 25 | 15 | 35 | 10 | 15 | 32 | 78 | 9 | 12 | 65 | 59 | 26 | 1 | 36 | 27 | 49 | 19 | 20 | 72 | 6 | 25 | 9 | 68 | 9 | 11 | 10 | 42 | 41 | 23 | 15 | 21 | 9 | 16 | 18 | 22 | 7 | 5 | 13 | 6 | 5 | 1 | 89 | 12 | 5 | 44 | 3 | 31 | 16 | 41 | 7 | 5 | 75 | 28 | 5 | 9 | 0 | 1 | 2 | 19 | 39 | 0 | 1 | 8 |
| NA | NC_014715 | NC_014715.1 | Southern rice black-streaked dwarf virus segment 2; complete genome. | 1259 | 1258 | 648 | 650 | 0 | 3815 | 0.33 | 0.33 | 0.17 | 0.17 | 0 | 0.34 | 0.905 | 0.0019 | 0.9981 | 1.925 | 1 | 0 | 1 | 1227 | 1212 | 617 | 625 | 0 | 3681 | 0.33 | 0.33 | 0.17 | 0.17 | 0 | 0.34 | 0.9022 | 0.0126 | 0.9875 | 1.9223 | 0 | 1 | 0 | 1 | 1227 | 1212 | 617 | 625 | 0 | 3681 | 0.33 | 0.33 | 0.17 | 0.17 | 0 | 0.34 | 0.9022 | 0.0126 | 0.9875 | 1.9223 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 29 | 15 | 20 | 55 | 11 | 10 | 40 | 56 | 3 | 10 | 63 | 50 | 15 | 4 | 24 | 35 | 21 | 9 | 22 | 57 | 4 | 21 | 4 | 54 | 6 | 15 | 12 | 32 | 46 | 23 | 18 | 21 | 10 | 12 | 23 | 29 | 9 | 10 | 18 | 4 | 7 | 3 | 64 | 11 | 4 | 38 | 0 | 21 | 11 | 17 | 4 | 2 | 30 | 20 | 3 | 10 | 0 | 1 | 1 | 20 | 35 | 1 | 0 | 4 |
| NA | NC_014716 | NC_014716.1 | Southern rice black-streaked dwarf virus segment 3; complete genome. | 1185 | 1276 | 555 | 602 | 0 | 3618 | 0.33 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.8966 | 0.0776 | 0.9253 | 1.9031 | 1 | 0 | 1 | 1160 | 1242 | 533 | 575 | 0 | 3510 | 0.33 | 0.35 | 0.15 | 0.16 | 0 | 0.32 | 0.8951 | 0.072 | 0.9305 | 1.8987 | 0 | 1 | 0 | 1 | 1160 | 1242 | 533 | 575 | 0 | 3510 | 0.33 | 0.35 | 0.15 | 0.16 | 0 | 0.32 | 0.8951 | 0.072 | 0.9305 | 1.8987 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 21 | 16 | 15 | 21 | 9 | 7 | 14 | 52 | 7 | 8 | 58 | 59 | 26 | 8 | 30 | 25 | 44 | 8 | 26 | 59 | 6 | 20 | 10 | 57 | 6 | 11 | 9 | 20 | 48 | 13 | 12 | 21 | 8 | 21 | 14 | 19 | 7 | 1 | 13 | 3 | 12 | 3 | 61 | 6 | 8 | 36 | 6 | 18 | 19 | 22 | 9 | 4 | 51 | 18 | 7 | 13 | 0 | 0 | 0 | 9 | 29 | 1 | 0 | 6 |
| NA | NC_014717 | NC_014717.1 | Southern rice black-streaked dwarf virus segment 4; complete genome. | 1112 | 1235 | 583 | 641 | 0 | 3571 | 0.31 | 0.35 | 0.16 | 0.18 | 0 | 0.34 | 0.9071 | 0.0998 | 0.905 | 1.9256 | 1 | 0 | 1 | 1077 | 1193 | 557 | 614 | 0 | 3441 | 0.31 | 0.35 | 0.16 | 0.18 | 0 | 0.34 | 0.9085 | 0.0998 | 0.905 | 1.9233 | 0 | 1 | 0 | 1 | 1077 | 1193 | 557 | 614 | 0 | 3441 | 0.31 | 0.35 | 0.16 | 0.18 | 0 | 0.34 | 0.9085 | 0.0998 | 0.905 | 1.9233 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 23 | 14 | 12 | 32 | 12 | 16 | 33 | 50 | 6 | 12 | 53 | 40 | 20 | 3 | 27 | 17 | 23 | 11 | 30 | 52 | 6 | 26 | 7 | 39 | 8 | 7 | 9 | 36 | 45 | 23 | 7 | 14 | 11 | 17 | 19 | 23 | 7 | 8 | 17 | 6 | 9 | 2 | 60 | 4 | 3 | 40 | 3 | 15 | 9 | 21 | 3 | 6 | 56 | 24 | 3 | 14 | 0 | 1 | 4 | 11 | 26 | 0 | 1 | 11 |
| NA | NC_014708 | NC_014708.1 | Southern rice black-streaked dwarf virus segment 5; complete genome. | 1000 | 979 | 620 | 568 | 0 | 3167 | 0.32 | 0.31 | 0.2 | 0.18 | 0 | 0.38 | 0.9063 | 0.0544 | 0.9476 | 1.954 | 2 | 0 | 2 | 1105 | 1052 | 674 | 607 | 0 | 3438 | 0.32 | 0.31 | 0.19 | 0.18 | 0 | 0.37 | 0.9056 | 0.0683 | 0.9345 | 1.9487 | 377 | 2 | 0 | 2 | 1105 | 1052 | 674 | 607 | 0 | 3438 | 0.32 | 0.31 | 0.19 | 0.18 | 0 | 0.37 | 0.9056 | 0.0683 | 0.9345 | 1.9487 | 377 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 28 | 24 | 8 | 28 | 14 | 12 | 18 | 49 | 14 | 6 | 32 | 60 | 21 | 14 | 12 | 47 | 27 | 10 | 30 | 41 | 8 | 11 | 13 | 40 | 9 | 11 | 12 | 39 | 23 | 20 | 23 | 28 | 13 | 10 | 18 | 28 | 14 | 6 | 19 | 5 | 14 | 7 | 61 | 7 | 8 | 32 | 1 | 15 | 22 | 24 | 6 | 6 | 19 | 12 | 1 | 14 | 0 | 2 | 4 | 13 | 20 | 0 | 2 | 11 |
| NA | NC_014709 | NC_014709.1 | Southern rice black-streaked dwarf virus segment 6; complete genome. | 857 | 778 | 551 | 465 | 0 | 2651 | 0.32 | 0.29 | 0.21 | 0.18 | 0 | 0.38 | 0.896 | 0.133 | 0.8759 | 1.9573 | 1 | 0 | 1 | 775 | 700 | 492 | 415 | 0 | 2382 | 0.33 | 0.29 | 0.21 | 0.17 | 0 | 0.38 | 0.8954 | 0.1357 | 0.8734 | 1.9554 | 0 | 1 | 0 | 1 | 775 | 700 | 492 | 415 | 0 | 2382 | 0.33 | 0.29 | 0.21 | 0.17 | 0 | 0.38 | 0.8954 | 0.1357 | 0.8734 | 1.9554 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 20 | 12 | 12 | 26 | 6 | 9 | 14 | 22 | 9 | 5 | 30 | 50 | 21 | 6 | 9 | 41 | 35 | 9 | 16 | 26 | 15 | 7 | 9 | 33 | 2 | 10 | 2 | 29 | 6 | 5 | 23 | 20 | 17 | 1 | 12 | 20 | 6 | 3 | 8 | 7 | 4 | 1 | 45 | 4 | 6 | 20 | 0 | 7 | 4 | 9 | 3 | 11 | 6 | 7 | 0 | 8 | 0 | 1 | 3 | 10 | 28 | 1 | 0 | 3 |
| NA | NC_014710 | NC_014710.1 | Southern rice black-streaked dwarf virus segment 7; complete genome. | 697 | 772 | 330 | 377 | 0 | 2176 | 0.32 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.9101 | 0.1175 | 0.8891 | 1.9073 | 2 | 0 | 2 | 649 | 709 | 304 | 342 | 0 | 2004 | 0.32 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.8905 | 0.1312 | 0.8816 | 1.9004 | 0 | 2 | 0 | 2 | 649 | 709 | 304 | 342 | 0 | 2004 | 0.32 | 0.35 | 0.15 | 0.17 | 0 | 0.32 | 0.8905 | 0.1312 | 0.8816 | 1.9004 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 19 | 5 | 9 | 21 | 7 | 4 | 13 | 31 | 5 | 9 | 32 | 29 | 9 | 5 | 22 | 13 | 21 | 4 | 6 | 33 | 3 | 9 | 2 | 38 | 3 | 4 | 8 | 15 | 20 | 7 | 3 | 8 | 7 | 9 | 3 | 15 | 4 | 3 | 9 | 1 | 7 | 0 | 28 | 4 | 3 | 18 | 1 | 14 | 8 | 13 | 4 | 2 | 41 | 13 | 1 | 9 | 0 | 1 | 0 | 8 | 19 | 2 | 0 | 4 |
| NA | NC_014711 | NC_014711.1 | Southern rice black-streaked dwarf virus segment 8; complete genome. | 595 | 649 | 345 | 339 | 0 | 1928 | 0.31 | 0.34 | 0.18 | 0.18 | 0 | 0.35 | 0.9077 | 0.0522 | 0.9497 | 1.9374 | 1 | 0 | 1 | 556 | 597 | 318 | 305 | 0 | 1776 | 0.31 | 0.34 | 0.18 | 0.17 | 0 | 0.35 | 0.9074 | 0.0564 | 0.9452 | 1.9341 | 0 | 1 | 0 | 1 | 556 | 597 | 318 | 305 | 0 | 1776 | 0.31 | 0.34 | 0.18 | 0.17 | 0 | 0.35 | 0.9074 | 0.0564 | 0.9452 | 1.9341 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 14 | 4 | 11 | 22 | 9 | 8 | 12 | 25 | 9 | 3 | 27 | 23 | 3 | 7 | 10 | 16 | 15 | 5 | 13 | 30 | 1 | 7 | 2 | 20 | 5 | 6 | 6 | 23 | 19 | 13 | 13 | 10 | 2 | 6 | 6 | 11 | 3 | 5 | 7 | 2 | 5 | 3 | 28 | 4 | 1 | 14 | 1 | 10 | 5 | 13 | 1 | 6 | 21 | 14 | 1 | 5 | 0 | 1 | 1 | 7 | 12 | 1 | 0 | 5 |
| NA | NC_014712 | NC_014712.1 | Southern rice black-streaked dwarf virus segment 9; complete genome. | 589 | 655 | 332 | 324 | 0 | 1900 | 0.31 | 0.34 | 0.17 | 0.17 | 0 | 0.35 | 0.9095 | 0.0652 | 0.9376 | 1.9284 | 2 | 0 | 2 | 530 | 572 | 287 | 285 | 0 | 1674 | 0.31 | 0.35 | 0.17 | 0.17 | 0 | 0.34 | 0.8968 | 0.1436 | 0.8688 | 1.9158 | 0 | 2 | 0 | 2 | 530 | 572 | 287 | 285 | 0 | 1674 | 0.31 | 0.35 | 0.17 | 0.17 | 0 | 0.34 | 0.8968 | 0.1436 | 0.8688 | 1.9158 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 9 | 7 | 8 | 14 | 5 | 6 | 4 | 29 | 7 | 0 | 18 | 37 | 11 | 5 | 3 | 15 | 16 | 3 | 12 | 29 | 1 | 15 | 2 | 21 | 2 | 9 | 7 | 22 | 17 | 6 | 10 | 15 | 5 | 5 | 8 | 10 | 3 | 3 | 6 | 2 | 6 | 1 | 25 | 4 | 1 | 22 | 1 | 11 | 8 | 6 | 2 | 1 | 13 | 7 | 1 | 9 | 0 | 1 | 1 | 10 | 15 | 1 | 1 | 4 |
| NA | NC_014713 | NC_014713.1 | Southern rice black-streaked dwarf virus segment 10; complete genome. | 614 | 544 | 323 | 317 | 0 | 1798 | 0.34 | 0.3 | 0.18 | 0.18 | 0 | 0.36 | 0.9129 | 0.0698 | 0.9337 | 1.9375 | 1 | 0 | 1 | 586 | 501 | 299 | 288 | 0 | 1674 | 0.35 | 0.3 | 0.18 | 0.17 | 0 | 0.35 | 0.9137 | 0.0969 | 0.9091 | 1.9317 | 0 | 1 | 0 | 1 | 586 | 501 | 299 | 288 | 0 | 1674 | 0.35 | 0.3 | 0.18 | 0.17 | 0 | 0.35 | 0.9137 | 0.0969 | 0.9091 | 1.9317 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | 0 | 6 | 12 | 9 | 18 | 7 | 4 | 14 | 30 | 5 | 5 | 21 | 29 | 12 | 2 | 10 | 11 | 12 | 4 | 8 | 11 | 4 | 15 | 1 | 25 | 1 | 10 | 6 | 11 | 8 | 9 | 11 | 14 | 6 | 12 | 11 | 9 | 5 | 4 | 9 | 0 | 7 | 1 | 35 | 3 | 1 | 13 | 0 | 8 | 3 | 11 | 4 | 6 | 22 | 9 | 0 | 4 | 0 | 0 | 1 | 7 | 16 | 0 | 1 | 5 |